In the present study, we did not perform any experiments on humans and use of human samples. This study was conducted using veterinarian-observed dolphin health examination data and postmortem necropsy samples. Therefore, no painful medication, anesthesia, or sampling was performed on the live dolphin.
Experimental protocols (Protocol No. 21601) were approved by the Animal Experimentation Ethics Committee at Kagawa University. All procedures in this study were carried out in compliance with the Fundamental Guidelines for Proper Conduct of Animal Experiments and Related Activities in Academic Research Institutions under the jurisdiction of the Ministry of Education, Culture, Sports, Science, and Technology as well as WAZA (World Association of Zoos and Aquariums) and the guidelines of the care and use of animals established by Kagawa University.
All dolphins in Ocean Expo Park (OEP; Kunigami-gun, Japan) have been housed following category 1 animal handling business, which is standard for housing and exhibiting animals approved by Okinawa Prefecture (OEP; No. 643), as previously described in detail33. The health of the dolphins was monitored monthly by veterinarians on the basis of blood chemistry and behavior. Dolphins were maintained in outdoor pools with sea water sterilized by pressure filtration using polyester fiber and silica sand. The water temperature at the time of sampling was 27°C.
Sample Collection For Necropsy And Ct Scan
A male Indo-Pacific bottlenose dolphin, estimated to be approximately 50 years old, has been kept at OEP for 43 years since May 1, 1975. Renal function remained in the normal range until 2015 (Supplementary Table S1). Beginning in October 2017, this dolphin presented with symptoms, such as anorexia, and blood tests suspected infection. Therefore, antibiotics were administered. During the following 6 months, the dolphin alternated between anorexia and temporary recovery. However, the general condition worsened later, and despite treatment with antibiotics, corticosteroids and intravenous drip, the dolphin developed respiratory failure and died on March 22, 2018. A complete necropsy was immediately performed, and several tissues including the kidneys were dissected. Dissected tissues were fixed with paraformaldehyde and part of right kidney tissues were frozen for analyses.
Thereafter, CT (Asteion Super 4 Edition, Toshiba Medical Systems Co., Ohtawara, Japan and SOMATOM Scope, Siemens Healthineers Japan, Tokyo, Japan) and micro-CT scans (Latheta LCT-200, Hitachi Aloka Medical Ltd., Tokyo, Japan) were performed on the removed right kidney and reniculi, respectively, and some of the tissues were dried completely in a dryer for 3 days. Dried samples were used for analysis by microarea X-ray diffractometry and IR spectrometry.
Histological Analysis
Renal tissues were dissected and fixed with 10% buffered paraformaldehyde, embedded in paraffin, and sectioned into 3-µm-thick slices. The sections were then stained with hematoxyline and eosin (HE), or Von Kossa reagent34.
Micro Area X-ray Diffractometry
Dried medullary tissues were analyzed with a microbeam X-rays at several locations. In this study, a micro-area X-ray diffractometer (RINT-RAPID II Rigaku, Tokyo, Japan) with a microscope was used as previously described35. The analytical conditions were as follows: target, Cu; filter, Ni; voltage, 40 kV; current, 36 mA; and collimator diameter, 100 µm. The diffraction patterns obtained were compared with the data that were registered in the database of the Joint Committee on Powder Diffraction Standards (JCPDS).
Ir Spectroscopy
After X-ray analysis, tissues were ground to a powder and, then analyzed with IR spectroscopy36. IR spectra of the powders were recorded using a KBr tablet and IR spectrometer (FT/IR-4200 Jasco Tokyo, Japan).
Cell Line
DolKT-1 cells were obtained from the Department of Marine Science and Resources, College of Bioresource Science, Nihon University, Kanagawa, Japan. The establishment procedure of this cell line was described elsewhere37.
Cell Culture
DolKT1 cells were cultured in Dulbeccos modified eagle medium (DMEM) (Cat# 11885084; Gibco™, Grand Island, NY) supplemented with 10% FBS (Nichirei Biosciences, Tokyo, Japan), 1% insulin-transferrin-selenium (ITS-G 100X, # 41400045, Thermo Fisher, Waltham, MA), 50 U streptomycin/mL and 50 mg penicillin/mL (Life Technologies, Van Allen Way Carlsbad, CA). The cells were grown at 37°C in a humidified atmosphere with 5% CO2. We tested for mycoplasma on a regular basis. The cells were passaged at 90% confluency and exposed to different experimental conditions. The culture medium was changed with 1% FBS (if not mentioned separately) for 18 hours before the experiments. All experiments were performed between passages 24 and 30.
Treatment Protocol
DMEM (phosphate and magnesium concentrations in the medium were 0.9 and 0.8 mM, respectively) with 1% FBS was set as the control. In the treatment groups, the control medium was supplemented with NaH2PO4 and Na2HPO4 at a 1:2 proportion to reach the final phosphate concentration at 1.5 mM phosphate, and 2 mM phosphate respectively. MgCl2 was used to raise the magnesium concentration up to 2 mM. The pH of the medium was maintained at 7.4 in each case. The experiments conducted in this study were repeated at least three times.
Cell Morphological Analysis
Cell morphology was examined by using an inverted light-phase contrast microscope (Olympus FSX100; Olympus Corporation, Center Valley, PA).
Von Kossa Staining
Calcium deposition of the cultured cells was detected by Von Kossa staining. The cells were seeded in the 24-well plates at 1.5×105 cells/mL with a regular DMEM culture medium. After reaching 70% confluence, the cultured medium was switched to 5% FBS-containing medium for 18 hours. Subsequently, cells were cultured for 3, 5, or 7 days in accordance with our treatments containing 5% FBS. With regard to staining, we mostly followed a previously reported protocol38 with some modifications. Briefly, the cells were washed two times with phosphate-buffered saline (PBS) followed by fixation with 4% paraformaldehyde for 20 minutes. Then again cells were washed with PBS two times and once with water. After this washing, 2% silver nitrate solution was added and exposed to ultraviolet light for 30 minutes. After washing again with water, 5% sodium thiosulfate was added and kept for 3 minutes. After washing with water, hematoxylin was added for 10 minutes to counterstain the nuclei. Finally, after three times washing with water, calcification was observed by an Olympus FSX100 microscope (Olympus Corporation) at a magnification of × 42.
Cell Viability
Cells were seeded on 24-well tissue culture plates at 1.5×105 cells/mL and allowed to grow up to 70% confluence, and then switched to 1% FBS medium for 18 hours. The intervention was performed for 48 hours, and cell viability was then measured using a WST-1 assay kit in accordance with the manufacturer's protocol (Takara Bio, Otsu, Japan). Briefly, 50 µL of WST-1 reagents were added to each well of 500 µL of cell culture medium and incubated for 2 hours, and the absorbance was measured with a microplate reader (Corona Multi Grating Microplate Reader SH-9000Lab; Hitachi High-Tech Science Corporation, Tokyo, Japan) at a wavelength of 480 nm.
Ldh Assay
LDH concentrations in the medium were measured as an indicator of cell injury. An LDH cytotoxicity assay kit (Item no. 601170, Cayman Chemical, East Ellsworth Road Ann Arbor, MI) was used in accordance with the manufacturer's protocol. Briefly, the cell supernatant was removed after centrifugation, mixed with LDH reaction solution (reagents provided with the kit) and incubated at 37oC for 30 minutes. The absorbance was measured at 490 nm with a microplate reader (Corona Multi Grating Microplate Reader SH-9000Lab, Hitachi High-Tech Science Corporation).
Apoptosis Assay
To detect apoptosis, flow cytometry was performed by counting annexin V- and PI- positive cells in line with the manufacturer’s instructions (catalog no #ab14085; Abcam, Cambridge, UK). Briefly, cells were cultured for 48 hours in accordance with treatments and then trypsinized to obtain single cells. After washing with PBS twice, the cells were resuspended in a binding buffer with annexin V and PI for 5 minutes at room temperature. Apoptosis- positive cells were detected by using flow cytometry (BD FACS Canto II; BD Biosciences, San Jose, CA). Cells that were annexin V-positive and PI-negative were considered as apoptotic. At least 20,000 cells were analyzed in each sample.
Mitochondrial Oxygen Consumption
Mitochondrial oxygen consumption was measured by the Seahorse XFp Analyser (Agilent Technologies, Santa Clara, CA) with the Seahorse XFp Cell Mito Stress Test Kit (Agilent Technologies) in accordance with the manufacturer’s protocol. Briefly, cells were seeded into an Agilent Seahorse XFp well plate at a density of 1.5×105 cells/mL and kept in a culture medium in the incubator for 24 hours. While cells were near confluent, the culture medium was replaced with experimental medium for 36 hours. One hour before the measurement, the medium was washed again and replaced with Seahorse XF Assay Medium supplemented with 2 mM L-glutamine, 1 mM sodium pyruvate, and 10 mM glucose, and cells were placed in a non-CO2 incubator. The kit components that had to be calibrated for final concentrations in the wells were 2 µM oligomycin, 1 µM carbonyl cyanide- 4-phenylhydrazone (FCCP), 0.5 µM antimycin A, and 0.5 µM rotenone by using a loaded assay cartridge. After baseline measurement, preloaded inhibitors were released consecutively into each well in a calibration chamber. The machine recorded oxygen concentration in pmol/minute in every 4 minutes. The oxygen consumption rate (OCR) and extracellular acidification rate (ECAR) were normalized to total cellular protein content. The total protein concentration was determined by a standard colorimetric protein assay after each experiment.
Cpp Preparation
CPPs were prepared by mixing CaCl2 (final concentration was 5 mM), NaH2PO4 and Na2HPO4 in 1:2 proportion (final concentration was 6 mM) in 25 mL of regular DMEM supplemented with 5% fetal bovine serum and 1% streptomycin/penicillin. These concentrations were adopted from a previous study26. This medium was incubated at 37oC for 24 hours and centrifuged at 16,000 × g for 2 hours. Subsequently, supernatant was removed and precipitated CPPs were mixed with 5 mL of regular DMEM containing 10% FBS to make a CPP suspension that was later used as treatment.
Cpp-induced Cell Viability And Cytotoxicity
DolKT-1 cells were incubated with or without CPPs, and CPPs in combination with 2 mM magnesium for 24 hours. The WST-1 assay was performed to measure cell viability as stated above. To avoid background of CPP turbidity, we also measured absorbance at a wavelength of 630 nm and subtracted it from the absorbance at a wavelength of 480 nm. A cytotoxicity assay was performed for CPP-exposed cells for 24 hours by following the same protocols described above.
Statistical analysis
All statistical analyses were performed with GraphPad Prism software (GraphPad software, San Diego, CA). Data are presented as the mean ± standard error of the mean. One-way analysis of variance (ANOVA) followed by the Newman-Keuls multiple-comparison test was performed for all one-factor data to compare values in the control medium with those intervention groups. Comparison of two groups was performed using Students t-test (parametric).