Reagents
Chloroquine (CQ) and rapamycin (Rapa) were purchased from ApexBio (Shanghai, China). 3-methyladenine (3-MA), SKL2001 and MG132 were purchased from MedChem Express (Monmouth Junction, NJ). Cycloheximide (CHX) was purchased from AZKKA (Beijing, China).
Cell culture
OCCM-30, an immortalized murine cementoblast cell line, was provided by Dr. Martha J. Somerman (National Institutes of Health, Bethesda, MD, USA). The cell proliferation medium (PM) was prepared with Dulbecco’s modified Eagle medium (DMEM; Gibco, Grand Island, NY, USA), 10% fetal bovine serum (FBS; Gibco) and 1% penicillin-streptomycin (Invitrogen, Carlsbad, CA, USA) in a humidified atmosphere at 37°C with 5% CO2 as described previously40. To induce cementoblast mineralization, we prepared mineralized medium (MM) with DMEM, 10% FBS, 1% penicillin-streptomycin, 10 mM sodium β-glycerophosphate (Sigma-Aldrich, St. Louis, MO, USA), and 50 µg/mL ascorbic acid (Sigma-Aldrich).
Application of compressive force
To apply compressive force in vitro, we used a mechanical force-loading device. Briefly, a cover glass was placed over a confluent cell layer in the well, and the compressive force was adjusted by changing the number of steel balls in the plastic bottle. Based on our previously established protocols, OCCM-30 cells were subjected to compressive force at a magnitude of 1.5 g/cm2 for 12 h to mimic in vivo conditions41. For experiments assessing the effects of compressive force on cementoblast mineralization, we removed the force-loading device after the application of compression and incubated cells in PM or MM for 4 or 7 days.
Quantitative real-time polymerase chain reaction (qRT-PCR)
Total RNA was isolated from primary cells with TRIzol reagent (Invitrogen) according to the manufacturer’s instructions. mRNA was reverse-transcribed to complementary DNA with a cDNA transcription kit (Takara, Tokyo, Japan). qRT-PCR was performed with gene-specific primers and SYBR Green (Roche) and an ABI Prism 7500 Real-Time PCR System (Applied Biosystems, Foster City, CA, USA). Primer sequences are listed in Appendix Table 1 in the Supplementary Information.
Western blotting analysis
Cells were lysed with radioimmunoprecipation buffer (Solarbio, Beijing, China) for 30 min on ice. Protein concentrations were determined with a bicinchoninic acid (BCA) protein assay kit (Solarbio). Equal amounts of protein were electrophoresed on 10% or 15% sodium dodecyl sulfate polyacrylamide gels, and separated proteins were transferred to a polyvinylidene difluoride membrane (Millipore, Billerica, MA, USA). The membrane was blocked with 5% bovine serum albumin (Sigma-Aldrich) and incubated overnight at 4°C with the indicated primary antibodies. After washing, the membrane was incubated with the appropriate secondary antibody at room temperature for 1 h. Protein bands were visualized with a chemiluminescence kit (Applygen, Beijing, China), and band intensities were quantified with ImageJ. Antibodies used for Western blotting are listed in Appendix Table 2.
Alkaline phosphatase (ALP) staining and activity
ALP staining was performed with a NBT/BCIP staining kit (Beyotime, Beijing, China) according to the manufacturer’s instructions. After the induction of mineralization for 7 days, cells were fixed in 4% paraformaldehyde and incubated in alkaline solution for 60 min. ALP activity was analyzed with a colorimetric assay kit (Beyotime). Briefly, cells were washed with phosphate-buffered saline (PBS), lysed with 1% Triton X-100 (Sigma-Aldrich), and scraped into distilled water. We detected ALP activity at 405 nm using p-nitro-phenyl phosphate as a substrate. ALP activity relative to the control group was calculated following normalization to protein content.
Immunofluorescence staining
Cell samples were rinsed, fixed in 4% paraformaldehyde, permeabilized with 0.1% Triton X-100, and blocked with 5% goat serum (Zhongshan Golden Bridge, Beijing, China). Proteins were visualized with the primary antibodies indicated in Appendix Table 2. Secondary antibodies conjugated with fluorescent dyes were used to visualize target proteins. Nuclei were stained with 4′,6-diamidino-2-phenylindole (DAPI; Zhongshan Golden Bridge). Images were captured with a confocal imaging system (Carl Zeiss, Jena, Germany).
Mouse root resorption model
Adult male C57BL/6 mice (22–25 g, 6–7 weeks old) were purchased from Vital River Laboratory Animal Technology for use in this study. The experimental protocols were approved by the Animal Use and Care Committee of Peking University (LA2021076).
Mice were anesthetized by intraperitoneal injection of 10% chloral hydrate. The root resorption model was established in the right maxilla of each mouse, and the left side was designated the negative control site. Application of orthodontic mechanical force was performed as described previously27. A nickel–titanium coil spring (wire size, 0.2 mm; Smart Technology, Beijing, China) was used to connect the right maxillary first molar and maxillary incisors and provided a nearly constant force of approximately 20 g. Mice were randomly divided into different groups according to the duration of force applied (0, 1, 2, or 3 weeks), with five mice in each group.
Injection of the autophagy inhibitor CQ or activator Rapa
Mice were subjected to intraperitoneal injection of Rapa (3 mg/kg; ApexBio, Shanghai, China) to activate autophagy, CQ (25 mg/kg; ApexBio) to block autophagy, or PBS as a negative control. Mice were injected every other day for 3 weeks, with five mice in each group.
Hematoxylin and eosin (H&E) staining and immunohistochemistry (IHC)
Maxillae were collected, fixed in 4% paraformaldehyde for 24 h, decalcified in 10% ethylenediaminetetraacetic acid (EDTA) for 3 weeks, and embedded with paraffin. Consecutive sections (4 µm) were cut horizontally from the middle to apical third of the maxillary first molar. Sections from a similar position in the roots were used for histological study. Sections were stained with H&E for descriptive histology. After antigen repair, we stained sections for IHC by incubating them with the serial reagents of the UltraSensitive SP IHC Kit (Zhongshan Golden Bridge) according to the manufacturer’s instructions and with primary antibody (anti-LC3, OCN, Postn; 1:200) overnight at 4°C. Root sections were observed with a microscope.
Micro-computed tomography (micro-CT) scanning
Maxillae of mice were scanned with a micro-CT system (skyscan1272; Bruker, Belgium). The following parameters were used for micro-CT: voltage, 50 kV; current, 200 µA; pixel size, 3.5 µm. The average scan time per mouse was 90 min. Micro-CT scanning data were transferred to Mimics 21.0 (Materialise, Leuven, Belgium) for three-dimensional image processing and reconstruction.
Picrosirius red (PSR) staining
For PDL analyses, sections were deparaffinized and stained with PSR dye according to the manufacturer’s instructions. Collagen fibers were analyzed via polarizing microscopy. In this technique, Col-I fibers appear yellow.
High-throughput RNA sequencing (RNA-seq)
OCCM-30 cells were cultured and treated without or with CQ for 24 h and subjected to high-throughput RNA-seq. RNA was extracted from each sample, and ribosomal RNA was depleted with a TruSeq Stranded mRNA Library Prep Kit (Illumina, San Diego, CA, USA). An RNA library was prepared according to the manufacturer’s instructions, and paired-end sequencing was performed on a HiSeq X system (Illumina). After sequencing, transcriptome sequencing data were filtered by domestic Java code to remove adapter sequences and low-quality reads and mapped to the mouse genome with HISAT2. The raw RNA-seq data were deposited in the Gene Expression Omnibus database.
Small interfering RNA (siRNA) knockdown
All siRNA products were purchased from GenePharma (Shanghai, China). The following RNAi oligonucleotide sequences were used in this study: Postn-1: 5ʹ-GGAGAACAAUGUCAAUGUUTT-3ʹ (sense) and 5ʹ-AACAUUGACAUUGUUCUCCTT-3ʹ (antisense); Postn-2: 5ʹ-GCAGAAGACGACCUUUCAUTT-3ʹ (sense) and 5ʹ-AUGAAAGGUCGUCUUCUGCTT-3ʹ (antisense). When cells reached 60–70% confluence, transfection was performed using Lipofectamine 3000 (Invitrogen) according to the manufacturer’s instructions.
Immunoprecipitation (IP)
β-catenin was immunoprecipitated to detect ubiquitination using IP kits (Proteintech, Wuhan, Hubei, China) according to the manufacturer’s instructions. Briefly, we harvested cells by adding lysis buffer, collected the supernatant, and used it to determine the total protein concentration. Protein samples (1–2 mg) were incubated overnight with β-catenin antibody (Proteintech) or control rabbit IgG (Proteintech) at 4°C, followed by the addition of a protein A sepharose bead slurry and incubation for 4 h at 4°C. After bead binding, lysates bound to antibodies were centrifuged, and the pellets were resuspended and prepared for Western blotting. Horseradish peroxidase-conjugated anti-rabbit/mouse IgG secondary antibody was used to detect ubiquitination of β-catenin.
Statistical analysis
Statistical analyses were performed with SPSS 13.0 and GraphPad Prism 7 (GraphPad Software, San Diego, CA, USA). All data are presented as means ± standard deviations (SDs) and were evaluated by independent two-tailed Student’s t tests or one-way analysis of variance (ANOVA). Significance was defined as *P < 0.05, **P < 0.01, and ***P < 0.001. P > 0.05 was considered not significant (ns).
Data Availability
The data that supported the findings of this study are this study are available within the published article and its Supplementary Information files. Additional data are available from the corresponding author on reasonable request.