Cell culture
The Platinum-A (Plat-A) cell line (Cell Biolabs, Inc., USA), a packaging retroviral cell line, was cultured in Dulbecco’s Modified Eagle’s Medium (DMEM)-high glucose medium (Gibco, USA) with 10% FBS (Gibco), 2 mM L-glutamine (Gibco), 1% penicillin-streptomycin (ICN Biomedicals, OH), 1x non-essential amino acids (Gibco), and 1% blasticidin S (Life Technologies, NY). The cells were maintained in a CO2 incubator with 95% humidified air at 37 οC.
Subjects
In this research, according to previous studies and using StataCorp. 2003. Stata Statistical Software: Release 8. College Station, TX: StataCorp LP, the minimum sample size was determined to be 28 and 14 for patients and HCs groups, respectively. In total, 30 newly diagnosed patients with DLBCL were included in the study. Two third of the patients were male and 10 patients were female (mean age 63.7 ± 15.5). According to the immunohistochemistry (IHC) results and their medical records, 10 out of 30 patients (33.3%) had GCB-DLBCL and other patients (66.7%) showed non-GCB subtypes of DLBCL. The clinical characteristics of these patients are listed in Table 2. In DLBCL patients, the biopsy specimens were collected from different sources, including 24 lymph node cases, 2 soft tissue cases, 2 tonsil cases, 1 spleen case, and 1 gastrointestinal tract case. The specimens is placed into a sterile conical tube containing DMEM as the transport medium. In addition, 15 cases with reactive hyperplastic lymph nodes without any familial history of various malignancies were included in the study as HCs including 9 males and 6 females (mean age of 59.3 ± 16.8).
Table 1
Primers used in quantitative real-time reverse transcriptase-polymerase chain reaction.
Gene | Forward/ reverse | Sequence |
FCRL1 | Forward | 5'-CAGAGTTCAGATGCCCAGTT-3' |
| Revers | 5'-TCACATCAGCAGGGAC-3' |
BCL2 | Forward | 5'-GGGATGCGGGAGATGTGG-3' |
| Revers | 5'-GTAGCGGCGGGAGAAGTC-3' |
BID | Forward | 5'-CATCCGGAATATTGCCAGGC-3' |
| Revers | 5'-CCATGTCTCTAGGGTAGGCC-3' |
BAX | Forward | 5'-AACAAGCTGAGCGAGTGTCT-3' |
| Revers | 5'-GTTCTGATCAGTTCCGGCAC-3' |
PI3K | Forward | 5'-CTTCCTCCACCTCTTTGCCCTG-3' |
| Revers | 5'-AGCCACTACTGCCTGTTGTCTTG-3' |
β-actin | Forward | 5'-GGACTTCGAGCAAGAGATGG-3' |
| Revers | 5'-AGCACTGTGTTGGCGTACAG-3' |
Table 2: Association between different levels of FCRL1 protein expression with clinicopathological features of newly diagnosed of patients with DLBCL.
|
FCRL1 protein expression (MFI)
|
Variable n
|
P-value
|
χ2
|
High
(n=16; 53.3%)
|
Intermediate (n=7; 23.3%)
|
Low
(n=7; 23.3%)
|
|
|
|
|
|
|
|
0.004 0.81
|
|
|
|
|
Age (years)
|
|
0
|
1
|
2
|
3
|
< 40
|
|
6
|
2
|
3
|
11
|
40-60
|
|
10
|
4
|
2
|
16
|
> 60
|
2.2 0.53
|
|
|
|
|
Gender
|
|
11
|
5
|
4
|
20
|
Male
|
|
5
|
2
|
3
|
10
|
Female
|
5.98 0.02
|
|
|
|
|
Tumor Size (cm)
|
|
7
|
3
|
5
|
15
|
<4
|
|
9
|
4
|
2
|
15
|
≥4
|
6.31 0.015
|
|
|
|
|
Subtype
|
|
3
|
3
|
4
|
10
|
GCB
|
|
13
|
4
|
3
|
20
|
Non-GCB
|
7.81 0.007
|
|
|
|
|
Stage
|
|
7
|
3
|
5
|
15
|
Stage I-II
|
|
9
|
4
|
2
|
15
|
Stage III-IV
|
2.9 0.23
|
|
|
|
|
Extra-nodal status
|
|
10
|
4
|
5
|
19
|
0-1
|
|
6
|
3
|
2
|
11
|
>1
|
4.91 0.07
|
|
|
|
|
LDH (U/L)
|
|
7
|
4
|
6
|
17
|
Normal
|
|
9
|
3
|
1
|
13
|
High
|
8.52 0.003
|
|
|
|
|
IPI score
|
|
12
|
3
|
5
|
20
|
0-2
|
|
4
|
4
|
2
|
10
|
≥3
|
DLBCL diffuse large B-cell lymphoma, n number, MFI mean fluorescent intensity, GCB germinal center B, LDH lactate dehydrogenase, IPI international prognostic index.
Cd19 + b Cells Isolation
The tissue disaggregation method and magnetic-activated cell sorting (MACS) approach was performed to prepare human B-cells from tissue samples, as previously mentioned [27, 28]. Briefly, each tissue sample was transferred into a sterile petri dish (Nunc- Nalgene, USA), cut into 2–3 mm diameter pieces, and incubated for 60 minutes at 37 οC with a combination of serum-free DMEM-high glucose medium (Gibco), collagenase (Sigma-Aldrich, Germany), trypsin (Gibco), and DNAse (Sigma-Aldrich). Then, residual activity of trypsin was neutralized and single-cell suspensions prepared by injection of complete DMEM-high glucose medium (Gibco) into the solid tissues with a pushing and pulsing action, until cells are released. The cell suspensions were collected and centrifuged for 5 minutes at 1300 rpm. To remove the red blood cells (RBCs), the cell pellet is resuspended in 5 ml ammonium chloride solution and incubated for 5 minutes at room temperature. Human CD19 + B-cells were isolated from cell suspensions using CD19 positive selection kit and AutoMACS Pro Separator (Miltenyi Biotech, USA) according to the kit's instructions. The cell counts and percentage of cell viability were elucidate using a hemocytometer and trypan blue dye exclusion method. In addition, purity of isolated B-cells was determine using flowcytometry assay and fluorescein isothiocyanate (FITC)-labled anti-human CD19 antibody. In each sample, cell viability and purity ≥ 90% was acceptable for further investigation. Then, isolated B-cells were cultured in DMEM-high glucose medium supplemented with 1% penicillin- streptomycin, 2 mM L-glutamine, 1x non-essential amino acids, 15% FBS (all from Gibco), and 0.25 M B-class CpG oligodeoxyribonucleotide (CpG-ODN) (Miltenyi Biotech) for 5–7 days, until B-cell aggregation and increase in the number of cells were visible.
Evaluation Of Fcrl1 Protein Expression
The flowcytometry assay was used to evaluate the levels of FCRL1 protein expression in various cell lines and prepared CD19 + B-cells. To determine the expression levels of FCRL1 in malignant B-cells of diagnosed patients with DLBCL compared to HCs, cultured CD19 + B-cells were stained with a combination of Phycoerythrin (PE) anti-human FCRL1 (Miltenyi Biotech; clone: REA440), Pacific Blue anti-human CD19 (Biolegend, USA; clone: HIB19), PerCP-Cy5.5 anti-human CD20 (BD Biosciences, USA; clone: L27), Allophycocyanin (APC) anti-human/ mouse BCL6 (Miltenyi Biotech; clone: REA373), and Alex Flour® 647-labeled anti-BCL2 (Biolegend; clone: 100) antibodies or matched isotype control antibodies. In addition, the fluorescence minus one (FMO) controls were used to confirm the correct cell population gating and fluorescence spread. In patient’s samples, CD19 + CD20 + BCL2 + BCL6 + cells were selected as the malignant B-cells to analysis the expression levels of FCRL1. In addition, malignant cells were examined for dual kappa/lambda light-chain expression. Data were analyzed by a FACSCalibur flow cytometer (Becton Dickinson Biosciences, San Jose, CA, USA), and assessed using FlowJo software (v10.1, FlowJo, Ashland, OR, USA).
Preparation Of Retrovirus Packaging
To determine the potential roles of FCRL1 on DLBCL development, we selected retrovirus expression system for knockdown of this molecule in B-cells of patients with DLBCL. A high levels and more efficient of FCRL1- retrovirus is essential for efficient transduction of human B-cells in vitro. In order to, a potent packaging retroviral cell line Plat-A and retroviral GFP vectors (OriGene Technologies, USA, Locus ID 115350) were used in this experiment. This vector containing four unique 29-mer shRNA constructs against different splice variants of the FCRL1 genes. Also, non-targeting scrambled shRNA in pGFP-V-RS vector used as negative control to assess the efficiency of FCRL1 knockdown process. The shRNA constructs was transformed in Escherichia coli strain DH5α and selected on antibiotic plates to detect resistance plasmids [29]. The antibiotic-resistance bacteria were grown overnight in LB-agar media and then accuPrep Plasmid Maxi-Prep DNA Extraction Kit (Bioneer, Korea) was used to extract the E.coli DH5α plasmids, according to the kit instruction.
The calcium phosphate (CaPO4) precipitation method was performed to transient transfection of Plat-A cells and production of retroviral particles, due to easy and safety of this method [30]. The transfection efficiency was determined based on the GFP signals under the fluorescence microscopy. The supernatant of Plat-A cells containing retroviral particles were collected at 48h and 72h post-transfection, filtered with 0.45µm syringe filters (Millipore, USA) to remove the cell debris, and stored at -80°C until used for viral transduction in human B-cells.
Retroviral Transduction
Spin infection is the most efficient method for viral transduction of suspended human blood cells such as B-cells. Transduction duration, use of 8 µg/ml polybrene, and suitable density of the target cells are crucial factors to increase the efficiency of this protocol. The wells of 24 well cell culture plates seed with a combination of 1 ml retrovirus solution, 10 µg/ml goat F(ab')2 anti-human IgG/IgM (Jackson ImmunoResearch Laboratories, Inc., West Grove, PA), 8 µg/ml polybrene (Santa Cruz Biotechnology, Dallas, Tx), 0.25 µM B-class CpG-ODN (Miltenyi Biotech), and 3 × 106 prepared B-cells of DLBCL patients. The plates were centrifuged at 2500 rpm for 90 minutes, and maintained in a CO2 incubator with 95% humidity and 37 οC temperature. The efficiency of transduction and knockdown of FCRL1 expression were determined using quantitative real-time reverse transcriptase-polymerase chain reaction (qRT-PCR) and western blotting after 48 and 72h of incubation.
In continue, we indicated the treated cells and control cells phrases to describe the isolated B-cells that transduced with retroviral particles harboring FCRL1-targeting DNA or control vector DNA, respectively.
Quantitative Real- Time Pcr
To evaluate the genes expression levels, total RNAs were extracted from 1 to 1.5 × 106 target cells by RNAx plus solution (Cinagen Company, Iran) according to the manufacturer’s protocols. The quality and concentration of extracted RNAs were determined using the NanoDrop 1000 spectrophotometer (Thermo Scientific, USA). The same concentrations of extracted RNAs reverse transcribed to first-strand complementary deoxyribonucleic acid (cDNA) using random hexamer and one-step SYBR PrimeScript RT Reagent Kit (Takara, Japan) according to the manufacturer's guidelines. The qRT-PCR was performed on a rotor-gene 6000 instrument (Qiagen, Germany) in a 20µl reaction mixture for each sample containing 2µl of template cDNA, 10µl of SYBR Green PCR Master Mix (Takara), and appropriate amounts of each primer and DNase-RNase free water. Each reaction was incubated at 95°C for 30 sec, followed by 45 cycles (FCRL1), 30 cycles (BCL2, BID), and 35 cycles (BAX, PI3K) of 95 οC for 5 sec and 60 οC (FCRL1, BCL2 and BID) or 61οC (PI3K and BAX) for 30 sec. The Primers were designed using AlleleID 7.0 software (Premier Biosoft, USA). Sequences of primers are shown in Table 1. Human β-actin was used as an endogenous control to normalize the expression level of each gene. Relative expression levels of the target genes were calculated using the Relative Expression Software Tool 2009 (REST 2009) and reported as 2−ΔΔCt [31, 32].
Western Blotting
Western blotting was performed to detect the expression levels of FCRL1 and phosphorylated Akt (p-Akt) proteins in prepared B-cells of DLBCL patients. The cells were collected and washed three times with phosphate-buffered saline (PBS, pH 7.2), 72 h post retrovirus transduction. Target cells were lysed in RIPA buffer with protease and phosphatase inhibitors and protein concentration was determined using the bicinchoninic acid (BCA) kit (Sigma-Aldrich, Germany). The protein samples (40µg per sample) were separated by 12–15% SDS-PAGE gel, transferred onto polyvinylidene fluoride (PVDF) membrane (Millipore), and blocked with 5% skimmed milk in Tris Buffered Saline with Tween (TBST) at room temperature for 2 h. The membranes were incubated with primary antibodies against FCRL1 (0.5µg per ml, catalog number MAB20491, R&D Systems, USA), p-Akt (S473) (0.2µg per ml, catalog number MAB887, R&D Systems), and β-actin (1:4000, catalog number 66009-1-LG, Proteintech) at 4°C overnight with gentle shaking. They were washed three times with TBST and incubated with a horseradish-peroxidase (HRP)-conjugated secondary antibody for 1 h at room temperature. Finally, the expression levels of target proteins were assessed using enhanced chemiluminescence (ECL) assay.
Detection Of Intracellular Proteins By Flowcytometry
The expression levels of intracellular proteins p-Akt (S473), BCL2, and BCL6 were determined by flowcytometry analysis, according to the established protocols. Briefly, target cells were fixed with 0.01% formaldehyde for 20 minutes at room temperature and permeabilized with Tween 20 (0.1% v/v in PBS, pH 7.2) for 15 minutes in the dark at room temperature. Then, intracellular staining of cells was performed with a combination of Alex Flour® 647-labeled anti-BCL2 (Biolegend; clone: 100), APC anti-human/ mouse BCL6 (Miltenyi Biotech; clone: REA373), and fluorescein isothiocyanate (FITC)-labeled anti-human p-Akt (S473) (eBioscience; clone: CA) antibodies or matched isotype control antibodies for 30–45 minutes at 4 ºC. The expression of these proteins were also determined by FACSCalibur flow cytometry (BD Biosciences) and then analyzed using FlowJo software.
Cell Proliferation
The effects of FCRL1 knockdown on the rate of B-cell division was evaluated using cell division tracking dye carboxyfluorescein diacetate succinimidyl ester (CFSE) (Biolegend) according to the manufacturer’s instructions. In brief, cultured B-cells of DLBCL patients (1 × 106) were re-suspended in PBS and incubated with 0.5µM CFSE (Biolegend) for 8 minutes in the dark at room temperature, followed by the extensive washing of cells with complete DMEM high-glucose medium. The CFSE-labeled B-cells were transduced with FCRL1-retroviral particles based on the protocol, which has previously described in the “transduction of B-cells” section, and incubated in a CO2 incubator with 37 οC temperature. The cells were harvested at days 3 and 5 post-transduction and washed three times in PBS. The percentage of B-cells proliferation were determined using FACSCalibur flow cytometry (BD Biosciences) and assessed by FlowJo software based on the fluorescent intensity of CFSE dye. The non-labeled B-cells were used to exclude cell auto-fluorescent.
Apoptotic Cell Death And Cell Cycle Analysis
The potential roles of FCRL1 on B-cells apoptosis and cell cycle distribution were examined using flowcytometry analysis. The percentage of apoptotic cell death were evaluated using the FITC Annexin V apoptosis detection kit (BD bioscience). The cultured B-cells were collected, and washed twice in PBS, 48 and 72 h after retroviral transduction. The cells re-suspended with a solution for FITC Annexin V binding and stained with 5µl Annexin V FITC and 5µl propidium iodide (PI). Samples were incubated in the dark for 15 minutes at 4ºC, analyzed using a BD FACSCalibur flow cytometry, and assessed using FlowJo software.
To determine cells cycle phases, B-cells were collected 72 h post-transduction, fixed in ice-cold 70% ethanol overnight, and incubated with 50 µg/ml PI (Sigma-Aldrich), 0.1% Triton X-100, and 10 µg/ml DNAse-free RNaseA (Sigma Aldrich) in the dark for 15 minutes at 37 ºC. Cell cycle progression were assessed by FlowJo software.
P65 Nf-κb Detection By Enzyme-linked Immunoabsorbent Assay
The expression levels of p65 NF-κB was measured by NF-kB p65 (Total) Multispecies InstantOne Enzyme-linked immunoabsorbent assay (ELISA) Kit, (eBioscience) according to its protocol. Briefly, the B-cells were collected 72 h after transduction procedure, washed twice in PBS, resuspended in 1 ml DMEM-high glucose medium containing 0.5% FBS, and incubated at 37 οC for 30 minutes with or without 20 ng/ml of tumor necrosis factor-α (TNF-α) (Miltenyi Biotech). Absorbance was detected at 450 nm with ELISA reader and concentration of this nuclear transcription factor measured based on standard curve and adjusted by dilution factor. Each assay was performed in the duplicate wells and repeated three times independently.
Statistical analysis
Data analysis was performed using IBM SPSS 20 and Microsoft Excel 2016. Bonferroni adjustment and Dunn’s post hoc tests were carried out on each pair of groups. The unpaired t-test and Mann-Whitney U test were used to determine the source of significant variations between two groups with normal and non-normal distribution, respectively. The Fisher’s exact test was also used to identify the correlation between FCRL1 expression and clinical features of patients. Data are presented as mean ± standard deviation (SD), and a p value ≤ 0.05 is statistically significant.