Reagents
Williams E medium (Gibco or Sigma), Fetal bovine serum (Sigma or Nichirei Bioscienses), Penicillin-Streptomycin Mixed Solution (nacalai tesque), GlutaMAX I (Gibco), L-glutamine (nacalai tesque), Insulin-Transferrin-Selenium (Gibco), Holo-transferrin (FUJIFILM Wako), Insulin (Sigma), Hydrocortisone (Sigma or nacalai tesque), Dexamethasone (Sigma), Epidermal growth factor (Thermo Fisher or PeproTech), G418 (FUJIFILM Wako), EGF-TAMRA (Thermo Fisher), Hoechst33342 (nacalai tesque), Dimethyl sulfoxide (FUJIFILM Wako), Polyethylene Glycol - MW 8000 (MP Biomedicals), HBeAg ELISA Kit (Bioneovan or rsbio)
Antibodies and lectins
Anti EGFR mAb (#ab52894, Abcam), Anti Phospho-EGFR (Tyr1068) mAb (#2234, Cell Signaling Technology), Anti β-actin mAb-HRP (#5125, Cell Signaling Technology), PhoSL, PhoSL-FITC and PhoSL-biotin were provided by Dr. Kobayashi of J-Chemical, streptavidin-FITC (#SA-5001, Vector Laboratories)
Cells
HepG2-hNTCP-C4 WT was obtained from the National Institute of Infectious Diseases (Tokyo, Japan)21 and maintained in the primary hepatocyte maintenance medium (PMM), which consisted of Williams E medium supplemented with 10% heat-inactivated fetal bovine serum (FBS), 1% Penicillin-Streptomycin Mixed Solution(Stabilized) or (100 units/mL penicillin, 100 µg/mL streptomycin, 0.025 µg/ml amphotericin B), 2 mM GlutaMAX I or 2 mM L-glutamine, 1 x Insulin-Transferrin-Selenium or (5 µg/mL transferrin, 3 µg/mL human insulin, 5 ng/mL sodium selenite), 0.25 µg/mL amphotericin, 50 µM hydrocortisone, 5 µM dexamethasone, 10 ng/mL epidermal growth factor (EGF), and 0.5 mg/mL G418. In PhoSL inhibition assay to EGFR activation, HepG2-hNTCP-C4 WT was maintained in DMEM/F-12 supplemented with 10% heat-inactivated FBS, 1% Penicillin-Streptomycin Mixed Solution (Stabilized), 2 mM GlutaMAX I and 10 mM HEPES.
HepG2-hNTCP-C4 Fut8KO was established by Crispr-Cas9 system. HepG2-hNTCP-C4 WT was transfected with PX462 (Addgne) containing hFut8 sgRNAs using Lipofectamine 2000 (Invitrogen) and selected by puromycin at 2 µg/ml for 24 h. After the medium replacement, living cells were re-inoculated from 6 well plate to 150 mm dish and cultured for further two weeks. KO clones were established by isolating the formed colony with a cloning cylinder. KO was confirmed by genome sequencing. sgRNAs were listed in Table.1
(Table.1) sgRNAs for knock out of human Fut8 in HepG2-NTCP-C4.
hFut8 sgRNA sense 1
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5’-caccGAATGAGCATAATCCAACGCC-3’
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hFut8 sgRNA antisense 1
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5’-aaacGGCGTTGGATTATGCTCATTC − 3’
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hFut8 sgRNA sense 2
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5’-caccGACCTTGCTGTTTTATATAGG-3’
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hFut8 sgRNA antisense 2
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5’-aaacCCTATATAAAACAGCAAGGTC-3’
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HepAD38.7 cell, a tetracycline (tet) regulated HBV producing cell line, which was established using HepG2 cell22, was kindly provided by Dr. Christoph Seeger at Fox Chase Cancer Center(Philadelphia, U.S.)and maintained in a DMEM/F12 supplemented with 10% heat-inactivated FBS, 1% antibiotic-antimycotic solution, 5 µg/mL insulin, 0.5 mg/mL G418 and 400 ng/mL tetracycline (tet).
PANC-1 was obtained from RIKEN BioResource Research Center and maintained in a RPMI1640 supplemented with 10% heat-inactivated FBS, 1% Penicillin-Streptomycin Mixed Solution (Stabilized) and 2 mM GlutaMAX I.
Preparation of HBV
To obtain HBV for HBV infection experiments, HepAD38.7 cells were induced for HBV replication by omitting tetracycline in the culture medium. The culture medium of confluent HepAD38 cells without tet was accumulated every week for 2 weeks and HBV was precipitated with 6% PEG8000 (final concentration) at 4˚C overnight. The precipitate was pelleted by centrifugation and the precipitated HBV was suspended in PBS, concentrated, and filtered through a 0.45 µm filter (Millipore). The HBV DNA was quantified by qPCR.
HBV infection to HepG2-hNTCP-C4
HepG2-hNTCP-C4 was seeded on a type I collagen-coated 24-well plate (IWAKI) at 0.5 or 1 × 105 cells/well, and cultured for 1 day at 37°C under humidified conditions of 5% CO2. Cells were then infected with HBV at 1000 genome equivalent of infection (GEI) in the presence or absence of 0.5, 1, 2.5, 5, 10 µg/ml PhoSL or 10 µM Gefitinib in 0.5 mL of PMM containing 2% dimethyl sulfoxide (DMSO) and 4% PEG 8000. 24 h after infection, cells were washed twice with PMM containing 2% DMSO and cultured in 0.5 mL of PMM containing 2% DMSO for 9 days. Finally, supernatant and cells were harvested for analysis.
HBeAg ELISA
HBeAg in culture supernatant was measured using a commercially available HBeAg ELISA kit. The absorbances was measured at 450 nm and 630 nm on SpectraMax 190 (Molecular Devices) or Grating Microplate Reader SH-1200 Lab (CORONA ELECTRIC).
qPCR
HBV DNA was extracted as follows. Cells were lysed with hypotonic Buffer (20mM Tris-HCl [pH7.5-7.8], 50mMNaCl, 5mM MgCl₂, 0.1% 2-ME) and the supernatant was treated with 1% SDS and 0.2 mg/ml proteinase K overnight at 56℃. After incubation, the DNA was extracted with phenol-chloroform-isoamyl alcohol (PCI extraction) and purified by ethanol precipitation.
For cccDNA preparation, the cells were lysed with hypotonic buffer. The pellet was suspended in TE-1% SDS and lysed. Then, NaCl was added to the lysate at a concentration of 0.5 M and stood still overnight at 4℃. After centrifugation, the supernatant was treated with 0.2 mg/mL proteinase K. DNA was extracted with phenol-chloroform-isoamyl alcohol and purified by ethanol precipitation. To obtain cccDNA, purified DNA was digested with Plasmid-Safe ATP-Dependent DNase and purified by PCI extraction and ethanol precipitation.
HBV RNA was prepared with TRIzol (Invitrogen) and cDNA was synthesized by reverse transcription.
qPCR was performed using QuantStudi 6 Flex Real-Time PCR System (Life Technologies). Primers were listed in Table.2.
(Table.2) Primers for qPCR of HBV DNA, cccDNA, RNA23
HBV DNA forward primer
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5′-CTTCATCCTGCTGCTATGCCT-3′
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HBV DNA reverse primer
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5′-AAAGCCCAGGATGATGGGAT-3′
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cccDNA forward primer
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5’-GTCTGTGCCTTCTCATCTGC-3’
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cccDNA reverse primer
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5’-GCACAGCTTGGAGGCTTGAA-3’
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HBV RNA forward primer
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5’-ATCATCTCATGTTCATGTCCTAC-3’
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HBV RNA reverse primer
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5’-GGAGATCTCGAATAGAAGGAAAG-3’
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Cytotoxicity assay
HepG2-hNTCP-C4 WT was seeded on a type I collagen coated 96-well plate (IWAKI) at 3000 cells/well and cultured for 1 day at 37°C under humidified conditions of 5% CO2. After changing to fresh medium, cells were cultured with 0, 0.25, 0.5, 1, 2.5, 5, 10 µg/ml of PhoSL for 1 day. Viability was measured using CellTiter-Glo Luminescent Cell Viability Assay (Promega) and chemiluminescence intensity was measured with Multi-grating Microplate Reader SH-9000 (CORONA ELECTRIC).
PhoSL inhibition to EGFR activation
HepG2-hNTCP-C4 WT and PANC-1 were seeded on type I collagen-coated 60 mm dishes or type I collagen-coated 6-well plates (IWAKI) and cultured at 37°C under humidified conditions of 5% CO2. Cells were starved for 1 day by changing to serum-free medium. 3 h or 10 min before EGF stimulation, gefitinib as a positive control or PhoSL was added at 10 µM or 10 µg/ml, respectively. EGF stimulation was performed at 100 ng/ml. After adding EGF or EGF-TAMRA and incubating for 10 min at 37°C, 5% CO2 in a humidified condition, cells were washed with PBS and harvested in ice-cold TNE buffer (10 mM Tris-HCl [pH 7.8], 1% NP40, 1 mM EDTA, and 0.5 M NaCl) containing 1 × Protease Inhibitor Cocktail and 1 × Phosphatase Inhibitor Cocktail 2 by cell scrapers. After 15 min incubation on ice, the lysates were sonicated by Bioruptor UCD-200T (Cosmo Bio) and centrifugated at 20000 × g for 20 min at 4°C. The supernatants were collected as lysates.
Immuno blot
Lysates were subjected to 10% SDS-PAGE under reducing conditions, and subsequently transferred to PVDF membrane (Millipore, Billerica). After blocking with TBST containing 5% skim milk for 1 h at room temperature, the membrane was incubated with primary antibody in TBST containing 5% skim milk over night at 4℃. Primary antibody incubations for the phosphor-EGFR were in TBST containing 5% BSA. After three washes with TBST (10 min, room temperature), the membrane was incubated with anti rabbit IgG pAb – HRP [1 : 10000 dilution] in TBST containing 5% skim milk for 1 h at room temperature. After washing with TBST three times (10 min, room temperature), the signal was detected with Chemi-Lumi One Super (nacalai tesque) and imaged with Fusion Solo S (Vilber Lourmat). Band intensities were quantified with Fiji (https://imagej.net/software/fiji/). Primary antibody dilution ratios were described in Table.3.
(Table.3) Primary antibodies and dilution ratios for immune blot
Anti EGFR mAb
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1 : 3000
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Anti Phospho-EGFR (Tyr1068) mAb
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1 : 1000
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Anti β-actin mAb – HRP
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1 : 10000
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Preparation of PhoSL-Cy3
PhoSL was labeled by Amersham Cy3 Mono-Reactive Dye (GE Healthcare). Free Cy3 was removed by Zeba Spin Desalting Columns (Thermo Fisher Scientific).
Fluorescence staining
HepG2-hNTCP-C4 WT and Fut8 KO were seeded at 6 × 105 cells on type I collagen-coated glass base dishes (IWAKI) and cultured for 1 day at 37°C under humidified conditions of 5% CO2. After washing with PBS, cells were fixed with 4% paraformaldehyde in PBS for 15 min at room temperature. After three washes with PBS (5 min, room temperature), cells were stained with PhoSL-FITC [1 : 10000 dilution] and Hoechst33342 [1 : 1000 dilution] in PBS containing 2% BSA for 1 h at 4℃. After washing with PBS three times (5 min, room temperature), cells were observed and imaged with confocal laser-scanning microscope FLUOVIEW FV10i (OLYMPUS).
For EGF-TAMRA binding assay, cells were starved for 1 day by changing to the serum-free mediim. PhoSL was added at 10 µg/ml 10 min before EGF stimulation. EGF-TAMRA was mixed at 100 ng/ml. After 10 min incubation at 37°C in humidified conditions, cells were washed with PBS and fixed with 4% paraformaldehyde.
For PhoSL-Cy3 observation, HepG2-hNTCP-C4 were seeded at 1 × 104 cells/ well on collagen-coated 8-well chamber slides (Matsunami Glass) and incubated at 37°C under humidified conditions with 5% CO2 for 3 days. Cells were then infected with HBV at 2000 G.E.I in 0.5 mL of PMM containing 2% dimethyl sulfoxide (DMSO), 4% PEG 8000, and 10 µg/ml of PhoSL-Cy3. After washing with PBS, cells were fixed with 4% paraformaldehyde, and slides were mounted with Fluoro-KEEPER Antifade Reagent, Non-Hardening Type with DAPI (nacalai tesque). Cells were observed and imaged with a TCS-SP8 confocal microscope (Leica).
Flow cytometry
To confirm core-fucose depletion, HepG2-hNTCP-C4 WT and Fut8 KO were detached with Accutase (nacalai tesque) and centrifuged at 200 × g for 5 min at 4°C. After washing with PBS, cells were stained with PhoSL-FITC [1 : 10000 dilution] in PBS containing 1% BSA for 1 h at 4℃. After washing twice with PBS, flow cytometric analysis was performed with an Attune NxT Flow Cytometer (Thermo Fisher). In supplementary Fig. 2, HepG2-hNTCP-C4 WT and PANC-1 were stained with PhoSL-biotin [1 : 100 dilution] and streptavidin-FITC [1 : 100 dilution].
For quantification of PhoSL-Cy3, HepG2-hNTCP-C4 WT was seeded at 6 × 105 cells/well on type I collagen-coated 6-well plate (IWAKI) and cultured for 1 day at 37°C under humidified conditions of 5% CO2. Then, cells were infected with HBV at 2000 G.E.I in PMM containing 2% dimethyl sulfoxide (DMSO) and 4% PEG 8000 in the presence of 5 µg/ml PhoSL-Cy3. After 1 h incubation at 4℃, cells were placed at 37℃ and trypsinized after 0, 15 min and 24 h. Flow cytometric analysis was performed using a BD FACSCanto II Flow Cytometer (BD Biosciences). Data were analyzed with FlowJo (https://www.flowjo.com/solutions/flowjo/downloads).
Statistical analysis
All statistical analyses were performed with EZR (https://www.jichi.ac.jp/saitama-sct/SaitamaHP.files/statmedEN.html), and data were presented as mean ± SD where applicable. Dunnett’s test and Student’s t-test were used.