Phenolic Profile of Alhagi graecorum ethanolic extract
Figure (1) illustrates the polyphenolic compounds present in Alhagi graecorum Boiss. ethanolic extract that identified and quantified using HPLC. Sixteen phenolic compounds were found in A. graecorum ethanolic extract. Gallic acid was recorded as the highest phenolic compound with concentration of 2.05 mg g− 1 extract, followed by ellagic acid, chlorogenic acid, rutin, ferulic acid and catechin with concentrations of 1.41, 1.26, 1.20, 1.10 and 0.77 mg g− 1, respectively. While, the lowest concentration of phenolic compound (0.004 mg g− 1) was recorded by cinnamic acid, followed by kaempferol, pyro catechol and Methyl gallate with concentrations of 0.012, 0.02 and 0.04 mg ml− 1, respectively.
Antibacterial activity of A. graecorum ethanolic extract
As shown in Table (1) the antibacterial activity of camel thorn A. graecorum ethanolic extract and two conventional food preservatives, sodium benzoate and sodium propionate against two Gram-positive and three Gram-negative foodborne pathogenic bacteria were determined. DMSO was represented as negative control and ceftriaxone as positive control. The ethanolic extract showed antibacterial activity against all tested bacteria, the highest activity was showed against Staph. aureus, E. coli and P. aeruginosa with inhibition zone values 9.3, 9.2 and 9 mm, respectively. While, the lowest inhibition zones 7.5 and 7.8 mm was recorded against S. typhi and B. cereus, respectively. The ethanolic extract had higher antibacterial activity than both sodium benzoate and sodium propionate against P. aeruginosa, while these conventional food preservatives outperformed the ethanolic extract against the other tested bacteria.
MIC and synergy interaction of A. graecorum ethanolic extract with Na-benzoate and Na-propionate
The antibacterial activities of A. graecorum ethanolic extract against five strains of foodborne bacteria alone and in combination with Na-benzoate are summarized in Table (2). Both ethanolic extract and Na-benzoate showed different antibacterial activities against the tested bacterial strains based on the MIC values. The MICs of the ethanolic extract against the tested strains ranged from 1.2 to 1.8 mg ml− 1, and ranged from 0.6 to 0.9 mg ml− 1 with Na-benzoate. The FICI values were calculated to observe the synergistic interaction. Strong synergistic effect for the combination of ethanolic extract and Na-benzoate was observed against B. cereus, Staph. aureus and S. typhi with FICI values 0.31, 0.31 and 0.38, respectively. While, this combination showed additive interaction against E. coli and P. aeruginosa with FICI value of 0.56 and 0.75, respectively.
As shown in Table (3) the MICs of Na-propionate against the tested foodborne pathogenic bacteria was ranged between 0.5 and 0.9 mg ml− 1. Significant decrease in MICs value of Na-propionate (from 50–94%) was observed due to the combination with A. graecorum ethanolic extract, this reduction in MICs values depended upon the type of bacterial strain. Also, there was significant decrease in the MICs of the ethanolic extract when combined with Na-propionate. The interaction between the ethanolic extract and Na-propionate had either synergistic or additive effects and no antagonistic effect was recorded. The ethanolic extract enhanced the activity of Na-propionate against Staph. aureus, E. coli, S. typhi and P. aeruginosa as a synergistic interaction with FICI values 0.31, 0.31, 0.37 and 0.38, respectively. While, additive effect was showed against B. cereus with FICI value 0.63.
Time Kill Curve assay
Time kill assay was conducted to confirm the synergistic interaction between A. graecorum ethanolic extract and sodium benzoate or sodium propionate against some foodborne pathogenic bacteria as shown in Figure (2). Time kill curve assay showed that the synergistic combination of A. graecorum extract and sodium benzoate can decrease the growth of B. cereus, Staph. aureus and S. typhi to less than 2.3 log10 CFU/mL after 24 h of incubation., while the additive interaction between ethanolic extract and sodium benzoate observed reduction in the population of P. aeruginosa and E. coli < 2.2 log10 CFU/mL after 24 h of incubation. Besides that the synergistic interaction between the ethanolic extract and sodium propionate showed completely reduction in the growth of Staph. aureus, P. aeruginosa, E. coli and S. typhi after 24 h of incubation, whereas the additive combination had decrease the growth of B. cereus from 9.32 to 2 log10 CFU/mL after 24 h of incubation.
Molecular docking analysis
Molecular docking was carried out to obtain further information about the binding modes of highly concentrated compounds in the ethanolic extract of A. graecorum with the active site of DNA-Topo isomerase II. Molecular docking simulation study of gallic acid, chlorogenic acid, ellagic acid, ferulic, and rutin was performed in order to predict the antibacterial activity of these compounds. Furthermore, to understand the different binding modes and the interactions between these compounds and the active site of DNA gyrase. The results of docking’s scores ranging from − 4.2 to -7.29 kcal\mol comparing to 07N inhibitor as a reference drug − 7.4 kcal\mol. Rutin possess the highest binding affinities, while chlorogenic acid, ellagic acid and ferulic showed medium binding affinities, whereas gallic acid showed the lowest binding affinities to Topo isomerase ATPase enzyme Table 4.
Table 1
Antibacterial activity of A. graecorum ethanolic extract against some foodborne pathogenic bacteria.
Bacteria | Inhibition Zone (mm) |
-Ve control | Ethanol extract | Na-benzoate | Na-propionate | +Ve control |
B. cereus | 0 | 7.8 ± 1.7b | 11.0 ± 1.47a | 10.5 ± 1.08a | 10.7 ± 0.17a |
Staph. aureus | 0 | 9.3 ± 0.60c | 9.5 ± 0.71c | 10.3 ± 0.65b | 22.3 ± 0.73a |
E. coli | 0 | 9.2 ± 0.17c | 9.5 ± 1.32c | 10.6 ± 1.26b | 15.5 ± 0.76a |
S. typhi | 0 | 7.5 ± 0.29c | 9.8 ± 1.04b | 11.6 ± 2.28a | 10.5 ± 0.29ab |
P. aeruginosa | 0 | 9 ± 0.5b | 9.2 ± 0.41c | 8.9 ± 0.48c | 11.0 ± 1.00a |
n = 3, *SE: standard error, different superscripts within row are significantly different at 5% level, Critical Difference (0.05) = 1.220, negative control: DMSO, positive control: Ceftriaxone. |
Table 2
Synergic interaction between ethanol extract of A. graecorum and sodium benzoate against the tested foodborne pathogenic bacteria.
Bacteria | MIC (mg ml− 1) | FICB | FICE | FIC Index | Interaction |
MICB | MICE |
B. cereus | 0.9 ± .06 | 1.2 ± 0.2 | 0.25 | 0.06 | 0.31 | S |
Staph. aureus | 0.6 ± .11 | 1.2 ± 0.2 | 0.06 | 0.25 | 0.31 | S |
P. aeruginosa | 0.6 ± 0.06 | 1.8 ± 0.6 | 0.50 | 0.25 | 0.75 | A |
E. coli | 0.6 ± 0.0 | 1.8 ± 0.6 | 0.06 | 0.50 | 0.56 | A |
S. typhi | 0.6 ± 0.1 | 1.2 ± 0.2 | 0.13 | 0.25 | 0.38 | S |
n = 3, MICB: minimum inhibitory concentration of sodium benzoate; MICE: minimum inhibitory concentration of ethanol extract; FICB: fractional inhibitory concentration of sodium benzoate; FICE: fractional inhibitory concentration of ethanol extract; S: synergistic effect; A: additive effect; the combination defined synergy if A: additive effect; the combination defined synergy if ƩFIC Index ≤ 0.5 and Additive if ƩFIC Index 0.5-1, Antagonism if ƩFIC Index > 4. MICs’s Values are expressed as mean ± SD. |
Table 3
Synergic interaction between ethanol extract of Alhagi graecorum and sodium propionate against the tested foodborne pathogenic bacteria.
Bacteria | MIC (mg ml− 1) | FICP | FICE | FIC Index | Interaction |
MICP | MICE |
B. cereus | 0.9 ± 0.06 | 1.2 ± 0.2 | 0.50 | 0.13 | 0.63 | A |
Staph. aureus | 0.5 ± 0.06 | 1.2 ± 0.2 | 0.06 | 0.25 | 0.31 | S |
P. aeruginosa | 0.5 ± 0.06 | 1.8 ± 0.6 | 0.13 | 0.25 | 0.38 | S |
E. coli | 0.5 ± 0.06 | 1.8 ± 0.6 | 0.06 | 0.25 | 0.31 | S |
S. typhi | 0.5 ± 0.11 | 1.2 ± 0.2 | 0.25 | 0.13 | 0.37 | S |
n = 3, MICP: minimum inhibitory concentration of sodium propionate; MICE: minimum inhibitory concentration of ethanol extract; FICP: fractional inhibitory concentration of sodium propionate; FICE fractional inhibitory concentration of ethanol extract; S: synergistic effect; A: additive effect; the combination defined synergy if ƩFIC Index ≤ 0.5 and Additive if ƩFIC Index 0.5-1, Antagonism if ƩFIC Index > 4. MICs’s Values are expressed as mean ± SD. |
Table 4
Docking analysis of the active site of Topo isomerase ATPase enzyme (energy scores (S), distances and interactions) for the original ligand and the tested compounds.
No. | Compound | S (Energy score) | Interaction | Distance Å |
1 | Original ligand | -7.4 | (ASP 81) H-donor (ARG 144) H-acceptor | 2.76 Å 2.74 Å |
2 | Gallic acid | -4.2 | (ASP 81) H-donor | 3.21 Å |
3 | Chlorogenic acid | -5.74 | (ASP 81) H-donor (ARG 144) H-acceptor (ARG 144) H-acceptor | 3.22 Å 3.02 Å 3.33 Å |
4 | Ellagic acid | -5.69 | (ASP 81) H-donor (GLY 85) H-acceptor | 3.07 Å 3.18 |
5 | Ferulic | -5.26 | (ASP 81) H-donor (ARG 144) H-acceptor | 3.38 Å 2.99 Å |
6 | Rutin | -7.29 | (ASP 81) H-donor (ARG 84) H-acceptor | 3.03 Å 3.12 |
The interaction of the original ligand 07N with the active site of topo isomerase ATPase has been studied and displayed in 2D and 3D style, presented in Fig. 3. (a). 07N mediated two H-bond interactions to bind with the key hot spot Asp81 and Arg144 with a distance of 2.76 Å and 2.74 Å respectively. The proposed binding mode of gallic acid (affinity value of -4.2 kcal/mol), presented in Fig. 3. (b), showed that, gallic acid has one H-bond interaction with Asp81 via hydroxyl group with a distance of 3.21 Å. The proposed binding mode of chlorogenic acid (affinity value of -5.74 kcal/mol), presented in Fig. 3. (c), showed that, chlorogenic acid has one H-bond interaction with Asp81 via hydroxyl group with a distance of 3.22 Å. In addition to, mediating two H-bond interactions with Arg144 via carboxyl groups with distances of 3.02 and 3.33 Å. The proposed binding mode of ellagic acid (affinity value of -5.69 kcal/mol), presented in Fig. 3. (d), showed that, ellagic acid has two H-bond interactions with Asp 81 and Gly 85 via hydroxyl group with a distance of 3.07 and 3.18 Å, respectively. The proposed binding mode of ferulic acid (affinity value of -5.26 kcal/mol), presented in Fig. 3. (e), showed that, ferulic acid has two H-bond interactions with Asp81 and Arg144 via carboxyl group with a distance of 3.38 Å and 2.99 Å respectively. The proposed binding mode of rutin (affinity value of -7.29 kcal/mol), presented in Fig. 3. (f), showed that, rutin has two H-bond interactions with Asp81 and Arg84 via hydroxyl group with a distance of 3.03 Å and 3.12 respectively.