2.1 Ethics statement
This study was approved by the Medical Ethics Committee of Shengjing Hospital, China Medical University (approval number: 2021PS536K). All animal experiments were conducted based on the principle of minimizing the number of animals and reducing the suffering of these animals.
2.2 Experimental Animals and Model Establishment
Healthy adult female and male C57/BL6J mice were purchased from Huafukang Company (Beijing, China) and used to breed young mice. The pups were randomly divided into 4 groups with 60 rats in each group: Control, OIR, OIR-NC, and OIR-mimics. Mice in the control group were fed by the mother mice under normal conditions. Mice in the OIR, OIR-NC, and OIR-mimic groups were exposed to 75% ± 2% oxygen on the 7th day after birth and returned to the normal environment on the 12th day after birth. Hyperoxia treatment resulted in vascular occlusion while the retina was still developing, and when the mice were returned to room air, it resulted in relative retinal hypoxia. The OIR-NC group and OIR-mimics group were injected with 0.5 µL of miR-106a-5p negative control reagent (miR-106a-5p NC mimics) + 0.5 µL into the vitreous cavity under isoflurane inhalation anesthesia on the 12th day, respectively. Animal transfection reagent + 0.5 µL PBS and 0.5 µL miR-106a-5p mimics (miR-106a-5p mimics) + 0.5 µL animal transfection reagent + 0.5 µL PBS. The sequences of the miR-106a-5p NC mimics were as follows: sense: 5'-UUCUCCGAACGUGUCACGUTT-3' and antisense: 5'-ACGUGACACGUUCGGAGAATT-3'. The sequences of the miR-106a-5p mimics were as follows: sense: 5'-AAAAGUGCUUACAGUGCAGGUAG-3' and antisense: 5'-ACCUGCACUGUAAGCACUUUUUU-3'. On days 14 and 17 after birth, the four groups of mice were selected to prepare follow-up experimental specimens for polymerase chain reaction (PCR) and other experiments.
2.3 Cell Culture and Transfection
HRECs were provided by Scientific Cell Research Laboratory, Carlsbad, California, USA. The 293T cell line was obtained from the Shanghai Cell Bank of the Chinese Academy of Sciences and identified using short tandem repeats. HRECs were cultured in RPMI 1640 medium (HyClone Laboratories, Logan, Texas, USA) and 10% fetal bovine serum (Biological Industries, Kibbutz Beit-Haemek, Israel), and 293T cells were cultured in Dulbecco’s modified DMEM medium (HyClone assay). Chamber, Logan, Texas, USA) and 10% fetal bovine serum (Biological Industries, Kibbutz Beit-Haemek, Israel) at 37°C and 5% carbon dioxide. All cells were passaged two to three times after resuscitation for subsequent experiments.
For MALAT1 knockdown experiments, the following groups were used: control group (Control group), cobalt chloride group (CoCl2 group), cobalt chloride + negative control RNA interference group (CoCl2 + NC group), and MALAT1-RNAi transfection group (CoCl2 + RNAi group).
For miR-106a-5p overexpression experiments, the groups were as follows: control group (Control group), cobalt chloride group (CoCl2 group), miR-106a-5p mimics negative control group (CoCl2 + NC group), and miR-106a-5p mimics group (CoCl2 + mimics group).
The cells in the experimental groups were treated with 200 µmol/L CoCl2 (Sigma Aldrich, St. Louis, MO, USA) for 24 h to simulate hypoxia. Cells were seeded at 70% density in six-well plates and transfected with MALAT1 RNAi (MALAT1-RNAi), negative control MALAT1-transfection of RNAi (RNAi-NC) (Genechem, Shanghai, China), miR-106a-5p mimics, and miR-106a-5p NC mimics (NC mimics) (GenePharma, Shanghai, China). The sequences used were as follows: MALAT1-RNAi: 5'-CTGCTATCTTAGCTGTCCTTA-3'; RNAi-NC:5'-TTCTCCGAACGTGTCACGT-3'; The sequence of the miR-106a-5p NC mimics was as follows: sense: 5'-UUCUCCGAACGUGUCACGUTT-3'; antisense: 5'-ACGUGACACGUUCGGAGAATT-3'. The sequence of the miR-106a-5p mimic was as follows: sense: 5'-AAAAGUGCUUACAGUGCAGGUAG-3'; antisense: 5'-ACCUGCACUGUAAGCACUUUUUU-3'.
2.4 RNA Extraction and Quantitative Real-Time Polymerase Chain Reaction
Total RNA was extracted from the retinal tissue of 14-day-old mice or cells from the aforementioned treatment groups using RNAiso Plus (Takara Biotech Co., Kyoto, Japan). The PrimeScript RT reagent Kit with gDNA Eraser (Takara, Japan) was used for reverse transcription, and TB Green PreMix Ex Taq II (Takara, Japan.) was used for quantitative PCR under the following thermocycling program: pre-degradation at 95°C for 30 s, followed by 40 cycles of 95°C for 3 s and 60°C for 30 s. The relative expression levels of MALAT1, miR-106a-5p, and MMP-2 were calculated by the 2−△△CT method. The mRNA and miRNA expression levels of the target genes were normalized to those of β-actin and U6, respectively. The specific primer sequences used for RT-PCR are listed in Table 1.
2.5 Retinal Vascular Staining
17-day-old mice were anesthetized with inhalation anesthesia so that to take out their eyeballs and then fixed for more than 4 h in 4% paraformaldehyde. The limbus was incised under a microscope, the retinal tissue was completely isolated after the anterior segment and vitreous were removed. Retinal tissue was cleaned with phosphate-buffered saline (PBS), stained with isolectin IB4 Alexa fluorochrome conjugate (Invitrogen, Waltham, MA, USA) dissolved in PBS containing 1% TritonX-100, and incubated overnight at 4°C. The retinal tissue was taken out the following day and washed with PBS. It was placed on a glass slide and under the microscope was cut into four pieces. Under a fluorescence microscope (Eclipse Ni; Nikon Inc., Melville, NY, USA), the slices were observed and photographed after being sealed with an anti-quencher. Retinal neovascular clusters and avascular areas were calculated using ImageJ software (NIH, USA).
2.6 Hematoxylin and Eosin Staining
The eyeballs of mice (17-day-old) were fixed overnight in 4% paraformaldehyde, and cut into 4 µm-thick sections after embedded in paraffin. After deparaffinization, the sections staining with hematoxylin-eosin (HE) and dehydrating, and finally sealed with neutral gum. We used a double-blind method to count the nuclei that penetrated the inner limiting membrane.
2.7 Immunohistochemistry
Using a streptavidin-biotin complex (SABC) kit (Boster Bio, Pleasanton, CA, USA), immunohistochemistry was performed. After deparaffinization, 3% citric acid repair solution was used to repair the sections, and dropwise incubation with 3% hydrogen peroxide for 10 min at room temperature was used to remove the endogenous oxidase. At 37 degrees Celsius, the sections were blocked with 5% goat serum for 30 minutes after being washed three times with PBS. Antibodies specific to rabbit IgG ((MMP-2, IL-1β, TNF-α, VEGF, HIF-1α, caspase-3, Bcl-2; 1:200; Immunoway Biotechnology Company, Plano, TX, USA)) were incubated with sections at 4°C overnight. PBS washed the sections three times the next day, treated dropwise with goat anti-rabbit IgG (1:200, Immunoway), incubated at 37°C for 30 min, and washed 3 times with PBS. SABC-POD was then added dropwise and the preparation was incubated at 37°C for 30 min. PBS was used instead of the primary antibody as the negative control. Immunohistochemical sections were stained with DAB for 60 s, photographed under a microscope after counterstaining with hematoxylin and mounting with neutral gum. Using Image-Pro Plus 6.0. to describe immunohistochemically positive cells by integrating optical density.
2.8 Western Blotting
Cells and retinal tissues were lysed with RIPA lysis buffer (Solarbio Life Science, Beijing, China) containing 1% PMSF to extract total protein, and proteins were quantified using the BCA Protein Quantiization Kit (Vazyme, Nanjing, China, Nanjing). The levels of retinal MMP-2, VEGF, hypoxia-inducible factor-1α (HIF-1α), interleukin (IL)-1β, tumor necrosis factor (TNF)α, Bcl-2, and caspase-3 expression were detected in the retina. After gel electrophoresis (80 V), the samples were transferred to polyvinylidene fluoride membranes. We then incubated the samples overnight at 4°C with the primary antibody (1:1000; Immunoway) after blocking with 5% bovine serum albumin. After 3 washes in TBST (0.05 M Tris, 0.15 M NaCl, pH 7.4 with 0.1% Tween-20), the samples were treated with horseradish peroxidase-labeled goat anti-rabbit IgG (H + L) Secondary antibody (1:2000, Immunoway) and incubated at 37°C for 1 hour. The western blotting results were obtained using chemiluminescence reagents (BeyoECL Plus, Shanghai, China) using a GE680 gel imager (GE Healthcare, Chicago, USA).
2.9 5-Ethynyl-20-deoxyuridine (EdU) Incorporation Assay
HRECs were seeded in a 12-well plate at a density of 3×104 cells/well and divided into the Control, CoCl2, Control-NC, and CoCl2 + RNAi groups, treated for 24 h, and then mixed with 5-ethynyl-2'- deoxyuridine (1× EdU) medium for 2 h. Next, the cells were treated with 4% paraformaldehyde for 20 min at room temperature, after which they were incubated with an osmotic agent (phosphate buffered saline containing 0.5% Triton X-100) for 10 min. Subsequently, the cells were stained with Azide 555 staining solution in the dark for 30 min, washed with detergent (3 times, 5 min each), and reacted with 1× Hoechst 33342 reaction solution at room temperature for 10 min in the dark. The following assays were performed using the EdU detection kit (BeyoClick™ EdU-555) according to the manufacturer's instructions. Nuclei were observed under a fluorescence microscope (Eclipse Ni; Nikon Inc., Melville, NY, USA). The cells whose nuclei were stained red were considered positive; cells whose nuclei were stained blue represented the total number. The quantitative data were expressed as the percentage of EdU-positive nuclei relative to the total number of nuclei counted.
2.10 Wound-Healing Assay
In a 6-well plate, HRECs were evenly seeded at a density of 1 x 106 cells, and each well was marked with three horizontal lines. The cells were treated and cultured overnight. After the cells had grown to more than 90% confluency, an even scratch was made with the tip of a 10 µL micropipette to the bottom horizontal line. A gentle wash of PBS was used to remove the damaged cell mass, and a photograph was taken, then cultured in serum-free medium for 48 h and photographed. Finally, we calculated the cell migration rate at 48 h as follows: cell migration rate = (area of the initial scratch − 48 h scratch area)/area of the initial scratch.
2.11 Transwell Assay
Transwell chambers (6.5 mm; Corning Glass Works, Corning, NY, USA) were used to detect in vitro cell migration in 24-well plates. Then, 500 µL of 1640 medium containing 10% fetal bovine serum (FBS) was added to the lower chamber. After transfection and CoCl2 treatment, 3×104 cells/mL were suspended in FBS-free RPMI 1640 medium, inoculated into the upper chamber, and cultured at 37°C and 5% CO2 for 24 h. The transwell chambers were fixed with 4% paraformaldehyde for 20 min, washed with PBS, stained with 0.1% crystal violet for 20 min, and washed with PBS. The cells that failed to invade were gently wiped off using a cotton ball. Stained cells were counted under an inverted fluorescence microscope (Eclipse Ni; Nikon Inc., Melville, NY, USA).
2.12 Flow Cytometry for Apoptosis
CoCl2 was added for 24 h after the HRECs were transfected. A trypsin of EDTA-free was used to digest cells, and after collecting and centrifuging the sample, the supernatant was removed and washed three times with PBS. An apoptosis detection kit (Vazyme Biotec Co., Nanjing, China) was used to stain the cells with Annexin-PE/7-AAD. According to the manufacturer's instructions, protected from light for 10 minutes at room temperature, and then obtain the proportion of apoptotic cells in each group by using a flow cytometer (BD, FACSCalibur, NJ, USA). Data analysis was performed using Cell Quest Pro software (Becton-Dickinson, CA, USA).
2.13 Tube Formation
A 50 µL volume of Matrigel (Corning Inc., Corning, NY, USA) diluted 2:1 with basal medium was evenly spread on the bottom of a pre-cooled (− 20°C) 96-well culture plate, and then the plate was placed at 37°C. The cells were then incubated in a cell incubator for 30 min, suspended in culture medium containing 10% fetal bovine serum, and seeded at 2×104 cells per well in Matrigel-coated 96-well plates. Six hours were incubated in microplates with cell suspensions from different treatment groups, tube formation was observed under an inverted microscope (ECLIPSE Ni-U, Nikon), and the number of nodes and grids was counted.
2.14 Dual Luciferase Reporter Gene Assay
Using the starbase bioinformatics website, we predicted the sites in hsa-miR-106a-5p that binding to MALAT1 and MMP-2. We designed and constructed the expression vector was, and hsa-miR-106a-binding to MALAT1 and MMP-2 was validated by using the dual-luciferase reporter gene. Firstly, seeded 293T cells into 96-well plates (5×103 cells/well),a firefly fluorescence expression vector and a Renilla fluorescence control plasmid were transfected when the cells reached approximately 70% confluency. After that, the experimental group was treated with a mimic of has-miR-106a-5P, while the control group was treated with the negative control vector. After 48 h of co-transfection, fluorescence was measured using a dual-luciferase detection kit (Promega Corporation, Madison, WI, USA).
2.15 Statistical Analysis
All values are expressed as the mean ± standard deviation (SD) of at least three independent experiments. Analysis of variance or Student's t-tests were performed using GraphPad Prism 8.0 software (GraphPad, USA). *P < 0.05, **P < 0.01, ***P < 0.001, ****P < 0.0005. Statistical significance was set at P < 0.05.