A laser processing technique is proposed for the processing of a 2.5mm thick carbon nanotube (CNT) composite bipolar plate for proton exchange membrane fuel cells (PEMFCs). This study aims to understand laser interaction with the CNT composite plate experimentally, using a pulsed nanosecond laser. Penetration depth, top width, spatter width and overall physical morphologies are studied. Scanning Electron Microscope (SEM) and 3D Scanning Confocal Microscope were used for observation and measurements. Based on that, a parametric investigation is conducted and reported systematically. Most importantly, the pulse repetition rate presents a unique nature of interaction that resulted in a critical repetition rate distinguishing three operational regimes. The physical and chemical properties of the regimes are further analyzed by Vickers microhardness testing and Energy Dispersive X-Ray (EDX) analyses performed on the surface and cross-section of each specimen. The results reveal that the pulse repetition rate introduces changes in mechanical properties and chemical compositions in the vicinity of the processed region. In conclusion, lower pulse repetition should be favored for less impact on mechanical properties, chemical composition, and morphological aspects.