Construction Of Genome Editing Vector Plasmids For Mt1 And Mt2 Genes
ChopChop software (https://chopchop.cbu.uib.no/) was used to design single guide RNAs (sgRNAs) targeting exon 1 of the mouse MT1 gene (NM_013602) and the mouse MT2 gene (NM_008630). The pairs of synthetic oligo DNA for CRISPR RNA (crRNA) targeting MT1 (5’-CCGGAGGATCGGGAGTCTTACCGG-3’ and 5’-AAACCCGGTAAGACTCCCGATCCT-3’) and MT2 (5’-CCGGGTCCCCCTTACCGGAGGCAC-3’ and 5’-AAACGTGCCTCCGGTAAGGGGGAC-3’) were annealed to form double-stranded DNAs and cloned into the pGuide-it-ZsGreen 1 vector and pGuide-it-tdTomato vector (Clontech Laboratories, Mountain View, CA, USA), respectively. They were named the pGuide-it-ZsGreen 1 MT1 sgRNA vector and the pGuide-it-tdTomato MT2 sgRNA vector. To construct a vector containing a drug resistance gene as a selection marker, the pEF6/Myc-His vector (ThermoFisher Scientific, Waltham, MA, USA) was used as a template for PCR to amplify the SV40 promoter and coding region of the blasticidin resistant gene (BSD) and to create an EcoRI-EcoRV restriction site at the 5’ and 3’ ends with the following primers: forward primer, 5’- CCGAATTCCTGTGGAATGTGTGTCAGTTAG − 3’ and reverse primer, 5’-GAGATATCTTAGCCCTCCCACACATAAC − 3’. Furthermore, the amplified cDNA was subcloned into the EcoRI-EcoRV fragment of the pGuide-it ZsGreen 1 vector with and without the target sequence for MT1, termed the pGuide-it bsd MT1 vector and pGuide-it sgRNA bsd vector, respectively.
Cell culture of the C2C12 cell line, establishment of MT knockout cells using the CRISPR-Cas9 system, and differentiation into myotubes
The C2C12 cell line was obtained from the American Type Culture Collection (ATCC, VA, USA). The C2C12 myoblasts were maintained in Dulbecco’s modified Eagle’s medium (DMEM) (Sigma-Aldrich, St. Louis, MO, USA) supplemented with 10% fetal bovine serum (FBS; Sigma-Aldrich) at 37°C in the presence of 5% CO2. For genome editing, undifferentiated C2C12 cells (1 × 105) were seeded onto 6-well plates one day prior to the addition of plasmid DNA. The lipofection reagent Lipofectamine 3000 (Life Technologies, Carlsbad, CA, USA) and a total of 2.5 µg of plasmid DNA (pGuide-it MT1 sgRNA bsd vector; pGuide-it MT2 sgRNA tdTomato vector = 0.83 µg; 1.67 µg for MT1 and MT2 knockout; pGuide-it bsd vector; pGuide-it tdTomato vector = 0.83 µg; 1.67 µg for mock-transfection) were used to transfect the cells. After day 2, the cells were trypsinized and seeded into 100-mm dishes. Blasticidin A-resistant cell lines were then selected using DMEM containing 10% FBS and blasticidin A at a final concentration of 10 µg/mL. Genomic DNA was isolated from the cells using NucleoSpin Tissue (TAKARA Bio Inc., Kusatsu, Japan), and the region surrounding the sgRNA target site was amplified using primers for MT1 (5’-CAACGACTATAAAGAGGGCAGG-3’ and 5’-GCAAGAGCGGATTCTAGAAAGA-3’) and MT2 (5’-AACTCTTCAAACCGATCTCTCG-3’ and 5’-CTAGGAAGGTGAGGCAAATCAC-3’). Sequence data for the PCR products was obtained by Contract Analysis (Eurofins Genomics, Tokyo, Japan). The efficacy of genome editing was determined by quantifying the frequency of insertion/deletion (indel) formation using DEcomposition (TIDE: http://tide.nki.nl). Confluent cells were cultured in the differentiation medium (DM), DMEM supplemented with 2% horse serum (HS; Sigma-Aldrich), for five days to induce myotube differentiation. The medium was replaced with fresh DM every two days.
Measurement Of Intracellular Ros Generation
Intracellular ROS generation was assessed using CellRox Green (Thermo Fisher Scientific). The cells were then incubated with 5 µM CellROX in a CO2 incubator. After washing three times with phosphate-buffered saline (PBS), the cells were trypsinized and fixed in 4% paraformaldehyde in PBS. The rate of oxidized CellRoX-positive cells was quantified using a Guava easyCyte flow cytometer (Merck Millipore, Darmstadt, Germany), after filtering the fixed cells with mini Cell Strainers II (40 µm mesh) (Biomedical Science, Tokyo, Japan).
Myotube Fusion Index Calculation
The cells were fixed in 4% paraformaldehyde. After washing with PBS, the cells were stained with May-Grünwald staining solution (FUJIFILM Wako Pure Chemical) for 5 min at room temperature (RT). The cells were washed twice with PBS and incubated with Giemsa staining solution (FUJIFILM Wako Pure Chemical) diluted 1:20 in distilled water for 20 min at RT. Images were obtained using an optical microscope camera (TrueChrome II; TUCSEN Photonics, Fuzhou, China) after washing twice with PBS. Myocytes containing more than two nuclei were counted as myotubes. The fusion index was calculated as the ratio of the number of nuclei in the myotubes to the total number of nuclei.
Rna Isolation And Real-time Rt-pcr Analysis
RNA isolation and real-time RT-PCR analysis
Cell lysates were prepared using the RNAiso Plus reagent (TAKARA Bio). After the cells were lysed, chloroform (1/5 of the volume of the RNAiso Plus reagent) was added to the samples. The samples were centrifuged (11,000 × g) at 4°C for 15 min, and the supernatants were collected before adding one volume of RNA-free water and 0.7 volume of ethanol. The lysates were then added to Nucleospin RNA Kit (TAKARA Bio) columns, and the total RNA was isolated according to the manufacturer’s instructions. For reverse transcription (RT), 2 µg of RNA from each sample was reverse transcribed using a High-Capacity cDNA RT Kit (Life Technologies, Carlsbad, CA, USA). The cDNA samples were diluted (1:10) and subjected to real-time PCR (RT-PCR) using TB Green Premix Ex Taq II (TAKARA Bio) in a StepOnePlus Real-Time PCR system (Thermo Fisher Scientific). The primer sets used in the RT-PCR assay are provided in Online Resource 1. The PCR program was performed as follows: denaturing stage at 95°C for 20 s, followed by 40 cycles at 95°C for 3 s, and 60°C for 30 s. Each sample was analyzed in triplicate. To verify specificity, melting curve analysis and agarose gel electrophoresis were performed on real-time RT-PCR products. The PCR product level was calculated using the standard curve method, which involved plotting the quantification cycle values of serial dilutions of all cDNA sample mixtures on the y-axis against the logarithm of the standard sample concentrations on the x-axis. The relative amount of GAPDH (GAPDH) mRNA as an internal control housekeeping gene was determined to compensate for variations in RT-PCR efficiency.
Immunocytochemistry
C2C12 cells were seeded at a density of 3 × 104 cells per well in 48-well plate. After the differentiation, cells were fixed with 4% paraformaldehyde for 1 h at RT. After washing with PBS, blocking buffer (5% goat serum and 1 mg/mL bovine serum albumin in PBS) was added, and the cell specimens were incubated for two hours at room temperature. Samples were then treated overnight at 4°C with a primary antibody (anti-metallothionein antibody [UC1MT]; mouse monoclonal, #ab12228; Abcam, Cambridge, UK) of 1:100 dilutions in the blocking buffer, Fast Myosin Skeletal Heavy Chain [MY-32] (mouse monoclonal, #ab51263; Abcam), and Slow Myosin Skeletal Heavy Chain [NOQ7.5.4D] (mouse monoclonal, #ab11083; Abcam) of 1:500 dilutions in the blocking buffer). After washing in PBS with 0.05% Tween 20, a secondary antibody (Alexa Fluor 488 goat anti-mouse IgG (Life Technologies), 1:1000) was added. 1µg/mL Hoechest 33258 (Thermo Fisher Scientific) in PBS was used for the nuclear staining. Immunofluorescence images were captured using a BIOREVO BZ-X700 fluorescence microscope (Keyence, Osaka, Japan).
Sds-page And Western Blotting
The cells were sonicated and digested in cold mammalian protein extraction reagent (M-PER; Pierce Biotechnology, Rockford, IL, USA), which contained a complete mini protease inhibitor cocktail tablet (Roche Applied Sciences, Penzberg, Germany), and the extracts were centrifuged at 20,400 × g for 15 min at 4°C. Aliquots of the resultant supernatants containing 20 µg of total protein were treated with 25 mM mercaptoethanol and 167 mg/mL sodium dodecyl sulfate (SDS) and boiled at 100°C for 2 min. Each sample was then subjected to SDS–polyacrylamide gel electrophoresis (SDS-PAGE), followed by electroblotting onto polyvinylidene difluoride (PVDF) membranes using the Mini Trans-Blot Electrophoretic Transfer Cell (Bio-Rad Laboratories, Hercules, CA, USA). The membranes were initially treated with a 1:1000 dilution of rabbit antibodies against β-actin (rabbit polyclonal, #ab8227; Abcam), Fast Myosin Skeletal Heavy Chain and Slow Myosin Skeletal Heavy Chain, and myogenin (rabbit polyclonal, GTX33338) and MyoD [N1N3] (rabbit polyclonal, GTX100885) (GeneTex International Corporation, Hsinchu City, Taiwan) as primary antibodies, followed by treatment with a 1:2000 dilution of horseradish peroxidase (HRP)-linked anti-rabbit IgG antibody (#7074), and HRP-linked anti-rabbit IgG antibody (#7076; Cell Signaling Technology, Danvers, MA, USA) as secondary antibody in Tris-buffered saline (TBS)-0.05% Tween 20. Membrane proteins were visualized and quantified using Amersham ImageQuant 680 and analysis software (GE Healthcare Life Sciences, Marlborough, MA, USA) and a chemiluminescent substrate (Millipore, Billerica, MA, USA). A pre-stained SDS-PAGE standard (Bio-Rad) was used as a molecular mass standard protein to calculate the molecular weight of the proteins.
Statistical Analysis
The bell curve in Microsoft Excel (Social Survey Research Information, Tokyo, Japan) was used for the statistical analysis. Data sets were compared for significant differences using the paired Student’s t-test or one-way analysis of variance (ANOVA) using Dunnett’s test and the Tukey-Kramer method. The siginificance value was set at P < 0.05.