Agboli, E., Leggewie, M., Altinli, M., Schnettler, E., 2019. Mosquito-Specific Viruses-Transmission and Interaction. Viruses 11.
Altschul, S.F., Gish, W., Miller, W., Myers, E.W., Lipman, D.J., 1990. Basic local alignment search tool. Journal of molecular biology 215, 403-410.
Atoni, E., Zhao, L., Hu, C., Ren, N., Wang, X., Liang, M., Mwaliko, C., Yuan, Z., Xia, H., 2020. A dataset of distribution and diversity of mosquito-associated viruses and their mosquito vectors in China. Scientific data 7, 342.
Coffey, L.L., Page, B.L., Greninger, A.L., Herring, B.L., Russell, R.C., Doggett, S.L., Haniotis, J., Wang, C., Deng, X., Delwart, E.L., 2014. Enhanced arbovirus surveillance with deep sequencing: Identification of novel rhabdoviruses and bunyaviruses in Australian mosquitoes. Virology 448, 146-158.
Colmant, A.M.G., Etebari, K., Webb, C.E., Ritchie, S.A., Jansen, C.C., van den Hurk, A.F., Bielefeldt-Ohmann, H., Hobson-Peters, J., Asgari, S., Hall, R.A., 2017. Discovery of new orbiviruses and totivirus from Anopheles mosquitoes in Eastern Australia. Archives of virology 162, 3529-3534.
Faizah, A.N., Kobayashi, D., Isawa, H., Amoa-Bosompem, M., Murota, K., Higa, Y., Futami, K., Shimada, S., Kim, K.S., Itokawa, K., Watanabe, M., Tsuda, Y., Minakawa, N., Miura, K., Hirayama, K., Sawabe, K., 2020. Deciphering the Virome of Culex vishnui Subgroup Mosquitoes, the Major Vectors of Japanese Encephalitis, in Japan. Viruses 12.
Fauver, J.R., Grubaugh, N.D., Krajacich, B.J., Weger-Lucarelli, J., Lakin, S.M., Fakoli, L.S., 3rd, Bolay, F.K., Diclaro, J.W., 2nd, Dabire, K.R., Foy, B.D., Brackney, D.E., Ebel, G.D., Stenglein, M.D., 2016. West African Anopheles gambiae mosquitoes harbor a taxonomically diverse virome including new insect-specific flaviviruses, mononegaviruses, and totiviruses. Virology 498, 288-299.
Goenaga, S., Kenney, J.L., Duggal, N.K., Delorey, M., Ebel, G.D., Zhang, B., Levis, S.C., Enria, D.A., Brault, A.C., 2015. Potential for Co-Infection of a Mosquito-Specific Flavivirus, Nhumirim Virus, to Block West Nile Virus Transmission in Mosquitoes. Viruses 7, 5801-5812.
Grabherr, M.G., Haas, B.J., Yassour, M., Levin, J.Z., Thompson, D.A., Amit, I., Adiconis, X., Fan, L., Raychowdhury, R., Zeng, Q., Chen, Z., Mauceli, E., Hacohen, N., Gnirke, A., Rhind, N., di Palma, F., Birren, B.W., Nusbaum, C., Lindblad-Toh, K., Friedman, N., Regev, A., 2011. Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nature biotechnology 29, 644-652.
Groen, T.A., L'Ambert, G., Bellini, R., Chaskopoulou, A., Petric, D., Zgomba, M., Marrama, L., Bicout, D.J., 2017. Ecology of West Nile virus across four European countries: empirical modelling of the Culex pipiens abundance dynamics as a function of weather. Parasites & vectors 10, 524.
Grubaugh, N.D., Weger-Lucarelli, J., Murrieta, R.A., Fauver, J.R., Garcia-Luna, S.M., Prasad, A.N., Black, W.C.t., Ebel, G.D., 2016. Genetic Drift during Systemic Arbovirus Infection of Mosquito Vectors Leads to Decreased Relative Fitness during Host Switching. Cell host & microbe 19, 481-492.
Gu, Z., Gu, L., Eils, R., Schlesner, M., Brors, B., 2014. circlize Implements and enhances circular visualization in R. Bioinformatics 30, 2811-2812.
Hall-Mendelin, S., McLean, B.J., Bielefeldt-Ohmann, H., Hobson-Peters, J., Hall, R.A., van den Hurk, A.F., 2016. The insect-specific Palm Creek virus modulates West Nile virus infection in and transmission by Australian mosquitoes. Parasites & vectors 9, 414.
Hobson-Peters, J., Yam, A.W., Lu, J.W., Setoh, Y.X., May, F.J., Kurucz, N., Walsh, S., Prow, N.A., Davis, S.S., Weir, R., Melville, L., Hunt, N., Webb, R.I., Blitvich, B.J., Whelan, P., Hall, R.A., 2013. A new insect-specific flavivirus from northern Australia suppresses replication of West Nile virus and Murray Valley encephalitis virus in co-infected mosquito cells. PloS one 8, e56534.
Huang, X., Madan, A., 1999. CAP3: A DNA sequence assembly program. Genome research 9, 868-877.
Kampen, H., Maltezos, E., Pagonaki, M., Hunfeld, K.P., Maier, W.A., Seitz, H.M., 2002. Individual cases of autochthonous malaria in Evros Province, northern Greece: serological aspects. Parasitology research 88, 261-266.
Kenney, J.L., Solberg, O.D., Langevin, S.A., Brault, A.C., 2014. Characterization of a novel insect-specific flavivirus from Brazil: potential for inhibition of infection of arthropod cells with medically important flaviviruses. The Journal of general virology 95, 2796-2808.
Legakis, A., Constantinidis, T., Petrakis, P.V., 2018. Biodiversity in Greece. Global biodiversity. Volume 2, Selected countries in Europe, 71-124.
Lemoine, F., Correia, D., Lefort, V., Doppelt-Azeroual, O., Mareuil, F., Cohen-Boulakia, S., Gascuel, O., 2019. NGPhylogeny.fr: new generation phylogenetic services for non-specialists. Nucleic acids research 47, W260-W265.
Letunic, I., Bork, P., 2019. Interactive Tree Of Life (iTOL) v4: recent updates and new developments. Nucleic acids research 47, W256-W259.
Li, C.X., Shi, M., Tian, J.H., Lin, X.D., Kang, Y.J., Chen, L.J., Qin, X.C., Xu, J., Holmes, E.C., Zhang, Y.Z., 2015. Unprecedented genomic diversity of RNA viruses in arthropods reveals the ancestry of negative-sense RNA viruses. eLife 4.
McLean, D.M., Grass, P.N., Judd, B.D., Ligate, L.V., Peter, K.K., 1977. Bunyavirus isolations from mosquitoes in the western Canadian Arctic. The Journal of hygiene 79, 61-71.
Nasar, F., Erasmus, J.H., Haddow, A.D., Tesh, R.B., Weaver, S.C., 2015. Eilat virus induces both homologous and heterologous interference. Virology 484, 51-58.
Nomikou, K., Dovas, C.I., Maan, S., Anthony, S.J., Samuel, A.R., Papanastassopoulou, M., Maan, N.S., Mangana, O., Mertens, P.P., 2009. Evolution and phylogenetic analysis of full-length VP3 genes of Eastern Mediterranean bluetongue virus isolates. PloS one 4, e6437.
Papa, A., Dalla, V., Papadimitriou, E., Kartalis, G.N., Antoniadis, A., 2010. Emergence of Crimean-Congo haemorrhagic fever in Greece. Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases 16, 843-847.
Pettersson, J.H., Shi, M., Eden, J.S., Holmes, E.C., Hesson, J.C., 2019. Meta-Transcriptomic Comparison of the RNA Viromes of the Mosquito Vectors Culex pipiens and Culex torrentium in Northern Europe. Viruses 11.
Ratnasingham, S., Hebert, P.D., 2007. bold: The Barcode of Life Data System (http://www.barcodinglife.org). Molecular ecology notes 7, 355-364.
Sadeghi, M., Altan, E., Deng, X., Barker, C.M., Fang, Y., Coffey, L.L., Delwart, E., 2018. Virome of >12 thousand Culex mosquitoes from throughout California. Virology 523, 74-88.
Schultz, M.J., Frydman, H.M., Connor, J.H., 2018. Dual Insect specific virus infection limits Arbovirus replication in Aedes mosquito cells. Virology 518, 406-413.
Shi, C., Beller, L., Deboutte, W., Yinda, K.C., Delang, L., Vega-Rua, A., Failloux, A.B., Matthijnssens, J., 2019. Stable distinct core eukaryotic viromes in different mosquito species from Guadeloupe, using single mosquito viral metagenomics. Microbiome 7, 121.
Shi, M., Lin, X.D., Tian, J.H., Chen, L.J., Chen, X., Li, C.X., Qin, X.C., Li, J., Cao, J.P., Eden, J.S., Buchmann, J., Wang, W., Xu, J., Holmes, E.C., Zhang, Y.Z., 2016. Redefining the invertebrate RNA virosphere. Nature 540, 539-543.
Shi, M., Neville, P., Nicholson, J., Eden, J.S., Imrie, A., Holmes, E.C., 2017. High-Resolution Metatranscriptomics Reveals the Ecological Dynamics of Mosquito-Associated RNA Viruses in Western Australia. Journal of virology 91.
Vasilakis, N., Tesh, R.B., 2015. Insect-specific viruses and their potential impact on arbovirus transmission. Current opinion in virology 15, 69-74.