Preparation of the animals
We used 10 to 12-week-old, adult female C57BL/6 mice with an average weight of 20–25 g. A standard diet and water were provided for at least one week prior to all experiments to allow the mice to adapt to the local conditions and eliminate shipping stress. C57BL/6 mice were purchased from the National Cheng Kung University Animal Center, housed under standard laboratory conditions with a 12-h light-dark cycle, and provided food and water in a temperature-controlled room (22–24°C). All experiments were approved and reviewed by the National Cheng Kung University Animal Center Institutional Animal Care and Use Committee (IACUC-110157) and performed in accordance with relevant guidelines and regulations. The study is reported in accordance with ARRIVE guidelines.
Preoperative Antibiotic And Probiotic Bowel Preparations
Eighteen mice were divided into three groups, with six mice in each group, as shown in Fig. 6.
Group A was given a normal diet and water until the administration of the antibiotic bowel preparation (neomycin 0.38 mg/mouse and metronidazole 0.42 mg/mouse), which was based on the proportional calculation of dosage using a 60 kg man. Oral antibiotics were given one day before surgery. Group B was administered probiotics (Clostridium butyricum CBM588 0.05 mg/mouse/day, also based on a proportional calculation of dosage using a 60 kg man) via an intragastric tube once daily for 6 days before the antibiotic bowel preparation. Group C was initially given an antibiotic cocktail in water (kanamycin 0.4 mg/mL, gentamycin 0.035 mg/mL, colistin 0.057 mg/mL, metronidazole 0.215 mg/mL, and vancomycin 0.045 mg/mL) for 6 days to eradicate normal colonizing gut bacteria, which was frequently used in a standard murine model for Clostridum difficile infection research45. After a 1-day break, group C was then given the probiotic CBM588 daily (Clostridium butyricum CBM588 0.05 mg/mouse/day, based on a proportional calculation of dosage using a 60 kg man) for 6 days before antibiotic bowel preparation. All fecal pellets were collected before antibiotic bowel preparation for 16S rRNA metagenomic analyses.
Creation Of Colorectal Anastomoses
All the surgeries were performed by a single surgeon (Po-Chuan Chen), who followed the standard operative procedures described by McKarthy et al25. After general anesthesia was established with a single-dose intraperitoneal injection (50 mg/kg zoletil and 2.5 mg/kg xylazine), mice were prepared using the methods described previously25. Through a midline incision down to the peritoneal cavity, the bowels were carefully moved to the left side to expose the descending and sigmoid colons. Transverse colotomy of the sigmoid colon was performed using sharp micro-scissors (Supplementary Fig. 1A). Four to five interrupted stitches of 7 − 0 nylon stitches were used to repair the colotomy (Supplementary Fig. 1B). To test the integrity of the anastomosis, we filled the abdomen with sterile saline and then slowly inflated the anastomosis with 1 cm3 of air by advancing a lubricated 18 G angiocatheter into the rectum. 3 − 0 nylon sutures were used to close the abdominal incision and the skin. The warmer was turned on during the entire procedure to ensure that the animals were warm and prevent the occurrence of postoperative hypothermia.
Postoperative Performance Evaluation
The mice were observed daily and scored for seven consecutive days after surgery. Score measurements were performed as described previously46. In brief, the score points included weight change, behavior, posture, and pain (Supplementary Table 1).
Anastomotic Tissue Sample Harvesting
On day 7, the mice were sacrificed by placing them in a carbon dioxide gas box. Subsequently, the original abdominal incision was re-opened to explore the intra-abdominal contents. After carefully removing possible bowel-to-bowel adhesions, the segments above and below the bowel anastomosis were resected. Tissues were fixed in neutral buffered formalin for histological analysis and H&E staining.
Adhesion Score
Intra-abdominal adhesions were scored using a scoring system described previously46. Examples of intra-abdominal adhesions are shown in Supplementary Fig. 2.
Anastomotic Healing Score
Histological changes were evaluated based on the AHS as described previously46. Supplementary Table 2 provides details regarding the allocation of score points, including blood vessel ingrowth, fibroblasts, collagen formation, inflammatory cells, and healed layer description. Histological results were scored by a pathologist (Chien-Chin Chen) who was blinded to the treatment of the mice. Supplementary Fig. 3 shows the histological scoring of the anastomosis site.
Dna Extraction And Polymerase Chain Reaction
DNA was extracted from mouse feces, which were collected before antibiotic bowel preparation, using a fecal DNA extraction kit. ND-10000 (NanoDrop, Thermo Fisher Scientific, Waltham, MA, USA) was used to quantify the concentration of the purified DNA. Total DNA was stored at − 20 ºC in a refrigerator. For amplification of 16S ribosomal RNA gene variable regions 3 and 4, the forward primer (5’-ACT CCT ACG GGA GGC AGC AG-3’) and reverse primer (5’-ATT ACC GCG GCT GCT GG-3’) were used. PCR was conducted as described previously (5 min at 94°C, followed by 35 cycles of 30 s at 94°C, 1 min at 58°C, 30 s at 72°C, and 7 min at 72°C)47. The amplification products were separated by 1.5% agarose gel electrophoresis, stained with DNA VIEW (BIOTOOLS CO., Ltd. New Taipei City, Republic of China), and quantified using a SmartView Pro 1200 Imager System (Major Science, Saratoga, CA, USA).
V3-v4 16s Metagenomic Analysis
A total of nine samples (Group con, pre, pro with triplicates) were used for 16S rDNA Amplicon Sequencing using Illumina Sequencing-by-Synthesis technology to produce 2 × 300 bp paired-end reads. The V3-V4 hypervariable region of 16S rDNA was amplified using bacterial-specific forward (5’-TCG TCG GCA GCG TCA GAT GTG TAT AAG AGA CAG CCT ACG GGN GGC WGC AG-3’) and reverse (5’-GTC TCG TGG GCT CGG AGA TGT GTA TAA GAG ACA GGA CTA CHV GGG TAT CTA ATC C-3’) primer sets using the 16S Metagenomic Sequencing Library Preparation Kit (Illumina, San Diego, CA, USA). Indexed adapters were added to the amplicons using the Nextera XT Index Kit (Illumina, San Diego, CA, USA) according to the manufacturer’s instructions. Amplified DNA sizing accuracy was checked using the 4200 TapeStation System (Agilent Technologies, Santa Clara, CA, USA). After library construction, samples were mixed with the MiSeq Reagent Kit v3 (600-cycle) and loaded onto a MiSeq cartridge, and a 2 × 300 bp paired-end sequencing run was performed using the MiSeq platform (Illumina, San Diego, CA, USA). Sample preparation, library construction, and sequencing were performed by Welgene Biotech Co., Ltd. (Taipei, Republic of China).
Statistical analysis
Alpha diversity indices were compared using pairwise Kruskal–Wallis tests, in which the p value was adjusted using the Benjamini–Hochberg procedure. For β-diversity, pairwise analysis of similarities and permutational multivariate analyses of variance with 999 permutations were conducted and evaluated using principal coordinate analyses based on different distance matrices, where p-values were reported after Benjamini–Hochberg multiple testing correction.
Table 1
Comparison of clinical parameters among the three groups
| Group A@ | Group B@ | Group C@ | p value* |
Survival rate (%) | 83.3 | 66.7 | 100 | 0.317 |
Body weight change (%) | 11.32 (4.58) | 9.18 (3.85) | 6.93 (2.50) | 0.378 |
Adhesion score | 7.4 (0.24) | 6.75 (0.25) | 5.375 (0.30) | < 0.001 |
Postoperative performance score | 4 (1.79) | 3.2 (2) | 0 | 0.049 |
Anastomotic healing score (AHS) | 9.4 (1.29) | 13.25 (0.33) | 16.88 (0.58) | < 0.001 |
@Group A: control; Group B: CBM588; Group C: Antibiotic cocktail + CBM588 |
*Comparison between groups A and C |
#Data are presented as median (interquartile range, IQR) |