Cell Culture
Human gastric cancer cell lines GES-1, AGS, and HGC-27 were purchased from the Cell Bank of the Chinese Academy of Sciences. All cells were cultured in complete medium containing 10% fetal bovine serum (Gibco, USA) under 5% CO2 at 37°C. The cell growth state was observed under an inverted microscope, and the cells were passaged every 2-3 days, and the cells in the logarithmic growth phase were collected for the experiment.
Bioinformatics analysis
Query the information related to LACTB (GeneID: 114294) on NCBI, and conduct a preliminary analysis of its sequence. The expression of LACTB total mRNA in gastric cancer tissues was analyzed by using Oncomine and UALCAN analysis websites. LACTB-related differentially expressed genes were analyzed using the LinkFinder module of LinkedOmics, and GO and KEGG enrichment analysis was performed with DAVID.
Design of specific primers for LACTB gene
By querying the information related to LACTB (GeneID: 114294) through NCBI, it can be seen that LACTB has 7 exons and 3 standard mRNAs annotated as NM sequences: transcript 1 (V1, NM_032857.5) transcript 2 (V2, NM_171846 .4) and transcript 3 (V3, NM_001288585.2), 2 non-coding mRNAs annotated as XR sequences: XR1 (XR_931745.2) and XR2 (XR_429442.2). A reverse primer can be designed at the unique exon 6 of transcript 1. The primers used in RT-qPCR experiments are shown in table 1.
Table 1 Primer sequences for RT-qPCR
Name
|
Primer sequence
|
LACTB transcript variant 1
|
F1092
|
CAGGAAGAAAACGAGCCAGTG
|
R1230
|
GGTCACCCACTGTAGACAGAA
|
LACTB transcript variant 2
|
F945-2
|
CCTTTGTTCTTCAAACCTGGTAG
|
R1158
|
GCTAGACACAGCAGAAGGTA
|
LACTB transcript variant 3
|
F945-3
|
CCTTTGTTCTTCAAACCTGTCA
|
R1158
|
GCTAGACACAGCAGAAGGTA
|
HPRT
|
F148
|
ATGGCGACCCGCAGCCCT
|
R266
|
CCATGAGGAATAAACACCCT
|
Real-time fluorescent quantitative PCR reaction
Total RNA was extracted from gastric cancer cell lines and peripheral blood samples with UNlQ-10 column Trizol total RNA extraction kit (Sangon Biotech, B511321-0100) according to the reagent instructions and reverse transcribed into cDNA using PrimeScript™ RT reagent Kit with gDNA Eraser (Tarakra, RR047A). cDNA was analyzed by RT-qPCR using TB Green® Premix Ex Taq™ II (Tli RNaseH Plus) (Tarakra, RR820A). HPRT was used as an internal reference when determining the relative expression level of LACTB. The data were analyzed by the 2-ΔΔCt method to analyze the relative expression of the target gene.
Western blotting
Add 80 μl PMSF-containing lysis buffer to each well of the 6-well plate, and lyse the cells on ice for 30 min to extract total protein. The protein concentration was determined using the BCA kit (Solarbio). During SDS-PAGE electrophoresis, the total mass of protein loaded in each well was 30µg. The corresponding protein was detected with a specific primary antibody, and the image was acquired with a Bole blot exposure apparatus. Finally, the integrated optical density value of the protein band was determined using the image J analysis software. The GAPDH protein band was also detected in each sample as an internal control. The following primary antibodies were used in the experimental procedure: N-Cadherin(13116T), Snail(3879T), Vimentin(5741T), LC3A/B(4108S), Atg5(12994T), Atg12(2011), p-mTOR(5536T), p-ULK1(14202T) were purchased from Cell Signaling T echnology,and SQSTM1/p62(ab109012), Beclin-1(ab210498), LACTB(ab131171) were purchased from Abcam.
Overexpression of lentiviral vector to construct LACTB overexpression stable strain
The target gene LACTB transcript 1 (NM_032857.5) was ligated into the vector Ubi-MCS-SV40-EGFP-IRES-puromycin (accession GV367, Gene Kai). AGS and HGC-27 gastric cancer cell lines were infected with LACTB overexpressing lentivirus and empty vector virus to construct HGC-27 empty cell line (HGC-27-Vector) and HGC-27LACTB overexpressing stable strain (HGC-27-LACTB) , AGS empty cell line (AGS-Vector) and AGS-LACTB overexpression stable strain (AGS-LACTB). Puromycin (2 μg/ml) was added for selection to obtain cells with 100% infection efficiency.
RNAi lentiviral vector to construct LACTB knockdown stable strain
The siRNA sequence(LACTB-RNAi-67213-1:GAGCAGGAGAATGAAGCCAAA) of LACTB transcript 1 (NM_032857.5) was ligated into the vector hU6-MCS-CBh-gcGFP-IRES-puro-mycin (number GV493, Jikai gene), and infected AGS cells to construct AGS cell LACTB knockdown strain (AGS-sh-LACTB) and AGS empty vector stable strain (AGS-Vector-shRNA). Puromycin (2 μg/ml) was added for selection to obtain cells with 100% infection efficiency.
Wound Healing Experiment
Seed in 6-well culture plates at a density of 8 × 105 cells per well. Incubate for 24 hours in medium containing 10% fetal bovine serum. Using a 200 µl pipette tip to create a "cross"-shaped scratch on the cell surface of the dish, then aspirate the old medium and add medium containing 1% fetal bovine serum. Then cultured in a 5% CO2 incubator at 37°C, and collected images (100×) at 0 h, 24 h, and 48 h to calculate the width of the track, and calculate the scratch healing rate by Image J.
Cell Invasion/Migration Experiment
The pre-cooled 1640 medium was diluted with a 1:8 dilution ratio of Matrigel (Corning Costar, USA), and 60 μl was added to the upper chamber to solidify, and then the excess or uncoagulated gel was removed. Adding 200 μl of cell suspension to the upper chamber contains 80,000 cells. Adding 750 μL of medium containing 20% FBS to the lower chamber (the medium containing 10% FBS was used for migration experiments, and the chamber was not coated with matrigel). Incubate for a certain time in a 37°C, 5% CO2 incubator. Cells were first fixed with 4% paraformaldehyde for 30 minutes. Then stained with 0.1% crystal violet for 10 minutes, wiped off the cells on the upper layer of the filter membrane with a cotton swab, and left to dry naturally. The cells in the lower layer of the filter were observed under a microscope, and 5 different fields of view were randomly selected to collect photos (200X) and counted to obtain the average value. AGS cells in the LACTB overexpression group were incubated at 37°C for 24 hours in the invasion assay and 20 hours in the migration assay; the AGS cell LACTB knockdown group was incubated at 37°C for 30 hours in the invasion assay and 24 hours in the migration assay; HGC-27 cells in LACTB overexpression group were incubated at 37°C for 48h in the invasion assay and 30h in the migration assay.
Transmission Electron Microscopy (TEM)
When the cells are 80% full in the culture flask, the culture medium is dropped, the electron microscope fixative is added, and the cells are fixed at 4°C for 2-4 hours. The cells were centrifuged at low speed to obtain mung bean-sized cell clumps, which were then pre-embedded with 1% agarose, post-fixed with 1% osmic acid for 2 hours, dehydrated with alcohol at room temperature, embedded with acetone , and 812 embedding medium, and polymerized in an oven at 60 °C 48 hours. Ultramicrotome slices are 60-80 nm thick. Uranium-lead double staining (2% uranyl acetate saturated alcohol solution, lead citrate, each staining for 15 minutes), sections were dried overnight at room temperature. Observed under a transmission electron microscope, collected images for analysis.
Statistical analysis
SPSS.19.0(SPSS, Chicago, USA) and Graphpad Prism.8.0 were used for data analysis. When the measurement data conformed to a normal distribution, grouped independent samples t-test was used, and it was expressed as mean ± standard deviation (); P<0.05 was considered to be statistically significant.