Cell culture
Human umbilical vein endothelial cells (HUVECs), and human monocytes (THP-1) were cultured in HUVEC specific medium (PROCELL, CHINA, Ham's F-12K, 0.1mg/mL Heparin, 0.03-0.05mg/mL ECGs, 1% P/S) or RPMI-1640 (Gibco, USA) medium supplied with 10% fetal bovine serum (Gibco, USA). The THP-1 cells were stimulated with phorbol ester (PMA) (100 nM, sigma, USA) to differentiate macrophage-like sticky cells for later experiments. Peritoneal macrophages were isolated as previously described[14]. Human peripheral blood sample from health volunteers (HV) or patients with coronary artery disease (CAD) were obtained from the Ningbo First Hospital, which was allowed by the ethics committee of Ningbo First Hospital. Human peripheral blood-derived mononuclear cells, separated from human peripheral blood with human lymphocyte separation medium (Sigma), were cultured in RPMI-1640 medium containing 10% fetal bovine serum, and then were differentiated into macrophages in the presence of 50 ng/ml of recombinant human GM-CSF (Peprotech) for 4 days, as previously described[14–16]. IFN-γ was purchased from BioLegend. ox-LDL and recombinant human TNF-α protein were purchased from Beyotime.
Western Blotting
Western blotting
Western blotting was performed as previously described[14, 17]. Briefly, cells were collected, lysed, and then quantified with a BCA kit (Beyotime, China). 20 µg of protein was loaded into a SDS gel, followed by electronic transfer onto PVDF membranes (Millipore, USA), and then incubated with primary antibodies against DHX9 (No.17721-1-AP, Proteintech), STAT1 (No.10144-2-AP, Proteintech), STAT1 phospho Ser727 (p-STAT1, No.39634, Active motif), p38 (No.14064-1-AP, Proteintech), Phospho-P38 MAPK (Thr180/Tyr182) (p-p38, No.28796-1-AP, Proteintech), JNK (No.66210-1-Ig, Proteintech), Phospho-JNK (Tyr185) (p-JNK, No.80024-1-RR, Proteintech), ERK1/2 (No.11257-1-AP, Proteintech), Phospho-ERK1/2 (Thr202/Tyr204) (p-ERK1/2, No.80031-1-RR, Proteintech), p65 (No.66535-1-Ig, Proteintech), p65 (phospho S536) (p-p65, sc-136548, Santa Cruz), GAPDH (ab8245, Abcam), flag (ab205606, Proteintech), or Lamin B1 (No.66095-1-Ig, Proteintech). After incubating with the secondary antibodies, the protein bands were detected using an ECL kit (Pierce, USA).
Immunofluorescence
Immunofluorescence was performed as previously described[14, 17]. Briefly, after treatments, cells were fixed, permeabilized, and stained with primary antibodies against DHX9 (No.17721-1-AP, Proteintech), p65 (No.66535-1-Ig, Proteintech), p65 (phospho S536) (p-p65, sc-136548, Santa Cruz), F4/80 (No.28463-1-AP, Proteintech) at 4°C overnight. After incubating with the second antibodies, cellular nuclei were stained with DAPI (0.5 µg/ml, Cell signaling) and then imaged by a Carl Zeiss LSM 800 confocal.
Plasmids, Small Interfering Rnas (Sirnas) And Adeno-associated Virus
siRNA of DHX9 was synthetized and purchased from Shanghai GenePharma Co., Ltd (China). pCMV3-N-FLAG-DHX9 plasmid was obtained from Sino Biological Co., Ltd (China). siRNAs and plasmid were transfected with jetPRIME transfection reagent (polyplus, FRANCE), as previously described[14]. Adeno-associated virus serotype 9 (AAV)-GP-3-sh-DHX9 (AAV-sh-DHX9) and control AAV (AAV-sh-NC) were synthetized and purchased from GenePharma.
Real Time-pcr (Rt-pcr)
RT-PCR was performed as previously described[14]. Primers used for RT-PCR were as follows: human DHX9, F: CGAACCATCTCAGCGACAAAA, R: TGAGGTCCATGCTTATTTGCTC; human TNFα, F: CCTCTCTCTAATCAGCCCTCTG, R: GAGGACCTGGGAGTAGATGAG; human IL1β, F: ATGATGGCTTATTACAGTGGCAA, R: GTCGGAGATTCGTAGCTGGA; human IL6, F: ACTCACCTCTTCAGAACGAATTG, R: CCATCTTTGGAAGGTTCAGGTTG; mouse IL6, F: TAGTCCTTCCTACCCCAATTTCC, R: TTGGTCCTTAGCCACTCCTTC; mouse TNFα, F: CCCTCACACTCAGATCATCTTCT, R: GCTACGACGTGGGCTACAG; human GAPDH, F: GGAGCGAGATCCCTCCAAAAT, R: GGCTGTTGTCATACTTCTCATGG; Mouse GAPDH, F: AGGTCGGTGTGAACGGATTTG, R: TGTAGACCATGTAGTTGAGGTCA.
Enzyme-linked Immunosorbent Assay (Elisa)
The TNFα or IL6 protein expression in the Serum of mice was measured using the mouse TNF alpha ELISA Kit (ab208348, Abcam) or the mouse IL-6 ELISA Kit (ab222503, Abcam), according to the manufacturer’s instructions.
Oil Red O Staining
THP-1 macrophages were transfected with control siRNA (si-NC) or si-DHX9 for 48 h before exposure to 50 µg/mL ox-LDL (C0157S, Beyotime) for 30 min at 37°C. Then, the cells were fixed, permeabilized, and stained with primary antibodies against DHX9 (No.17721-1-AP, Proteintech), followed by staining with the second antibodies. Cellular nuclei were stained with DAPI (0.5 µg/ml, Cell signaling) and then imaged by a Carl Zeiss LSM 800 confocal.
Monocyte-endothelial Cell Adhesion Assay
The monocyte-endothelial cell adhesion assay was performed following previously described[18, 19]. Briefly, HUVECs (1.5×105 cells/mL) in the 96-well plates were treated with 10 ng/mL TNF-α (P5318, Beyotime) for 5 h. After transfection with si-NC or si-DXH9 for 48h, THP-1 cells were fluorescently labeled with 2 µM calcein AM (Sigma-Aldrich) for 15 min at 37°C. Then, the HUVECs and THP-1 cells were co-incubated for 1 h. After washing three times with PBS, the cells were imaged using a Carl Zeiss LSM 800 confocal.
Flow Cytometry Assay
After transfection with si-NC or si-DXH9 for 48h, the apoptotic rates or the cell cycle of THP-1 cells were analyzed with the Annexin V-PE Apoptosis Detection Kit (C1065M, Beyotime), or the Cell Cycle Analysis Kit (C1052, Beyotime) by a flow cytometer (Beckman, USA).
Analysis Of Single-cell Rna Sequencing
DHX9 mRNA expressions in the mononuclear phagocytes were analyzed using online analysis website (https://gustaveroussy.github.io/FG-Lab/).
Separation Of Cytoplasmic And Nuclear Fractions
After treatment, the cytoplasmic and nuclear fractions of THP-1 cells were separated by the Nuclear and Cytoplasmic Protein Extraction Kit (P0027, Beyotime), according to the manufacturer’s manual.
Protein Immunoprecipitation (Co-ip)
Co-IP was performed as previously described[14, 20]. Protein samples were immunoprecipitated with antibodies against DHX9 (No.17721-1-AP, Proteintech). Then, IP production was performed with Western blotting.
Chromatin Immunoprecipitation (Chip) Assays
ChIP assays were performed with the SimpleChIP® Enzymatic Chromatin IP Kit (Cell Signaling Technology, USA) as previously described[14, 20]. Chromatin samples were immunoprecipitated with antibodies against a negative control normal IgG, p65 (ab32536, Abcam), anti-RNA polymerase II (ab264350, Abcam) or DHX9 (No.17721-1-AP, Proteintech), respectively. Then, IP production was performed with RT-qPCR. The supernatant containing anti-DHX9, p65, or RNA polymerase II antibody-immunoprecipitated cross-linked protein-DNA complexes was further immunoprecipitated with anti-p65, DHX9, or RNA polymerase II antibody. Then, the immunoprecipitated DNA was purified for quantitative PCR analyses. The primers of IL-6 promoter were as following F: AGACCAGTGATTTTCACCAGG, R: TGGCATGAGCTGAGGGTTATTGC.
Animal Experiments
ApoE (−/−) mice (male, 7week-old, n = 12) were provided and housed in the Model Animal Research Center of ServiceBio (Wuhan, China) at an ambient temperature of 20–24°C with 40–70% relative humidity under a 12:12 h light-dark cycle. All mouse experiments were conducted after approval by the ethics committee of Ningbo First Hospital. The mice were randomly divided into the control group (n = 6), and DHX9-downregulated group (n = 6), which were injected with 1011 VG AAV-sh-NC, or AAV-Sh-DHX9 through tail vein, respectively. One week later, mice were fed a high fat diet (16.9% fat, 1.3% cholesterol, 21.1% crude protein, and 46.5% carbohydrates) for 12 weeks to construct a mouse model of atherosclerosis. Once the model of atherosclerosis was established (20 weeks old), mice were sacrificed by CO2 asphyxiation. Aorta from the ascending aorta to the arteria iliaca communis was isolated and stained using oil red (Beyotime, China). Atherosclerotic lesion sizes were assessed using Image Pro Plus 6.0 and expressed as the percentage of plaque area relative to the total intimal area.
Statistics Analysis
Data throughout the paper are expressed as mean ± SD. Statistical differences were calculated using unpaired two-tailed Student’s t test or one-way ANOVA with Bonferroni correction for multiple comparisons. A probability of p < 0.05 was considered statistically significant. Ns not significant.