Cell Culture. The human colon cancer cell line (HCT-116, SW480 and HT29), normal intestinal epithelial cell line (HIEC), 293T cells and 3T3 cells were all obtained from the Shanghai Institute of Biochemistry and Cell Biology, Chinese Academy of Sciences (Shanghai, P.R. China). Cells were cultured in Dulbecco’s modified Eagle’s medium supplemented with 10% fetal bovine serum and penicillin-streptomycin in cell incubator with 5% CO2 at 37 °C. The culture medium was changed every other day. MicroRNA mimics or plasmids were transfected using Lipofectamine 2000 according to the manufacturer’s instruction.
Lentivirus preparation and stable-transfected cell line. MiR-20b-5p was cloned into the HBLV-ZsGreen-PURO vector (Hanbio biotechnology Co., Ltd, Shanghai, China) and its auxiliary packaging original vector plasmid(pSPAX2 and pMD2G) were prepared. The three plasmid vectors were co-transfected into 293T cells, and replaced with complete medium 6 h after transfection, cultured for 48 and 72 h .Then, collect the cell supernatant rich in lentivirus particles, 4 ° C, 2000 × g, 10 min, remove the cell debris, and then collect the virus supernatant, using ultra-isolation: 4 ° C, 82700 × g, centrifuge 120 min, and finally a high titer of lentiviral ultra-eluate was obtained. HCT116 cells were used when cell confluence rate reached 50%, virus was added into the culture medium with the polybrene. 48 h later, flow sorting technology was used to sort GFP positive cells and perform cell expansion.
RNA oligonucleotides transfection. MiR-20b-5p-mimics, miR-20b-5p inhibitor (Shanghai Tuoran Biological Technology Co., Ltd.), CCND1 siRNA or nonspecific siRNA (Santa Cruz Biotechnology) were transfected into the colon cancer cells respectively, using Lipofectamine 2000(Invitrogen, USA) according to the manufacturer's protocol. The sequences of the siRNA oligonucleotides were provided in Table 1. At 48 h after transfection, RNA and protein were isolated for the following experiments.
Apoptosis and cell cycle assay. Annexin V/7-AAD Apoptosis Detection Kit from BD was used to detect the apoptosis following the manufacturer’s instruction. Anti-Ki67 and Hoechst were stained for cellcycle experiment. All flow cytometric analyses were performed on an LSR II Fortessa cytometer (BD Biosystems), and the data were analyzed using FlowJo software.
Wound-healing migration assay. Cells (1 × 105) were seeded into the culture insert(ibidi, German) in the middle of a 24-well plate Dish. After the cells are full of the insert area, the insert is removed with tweezers, a 500 µm wide scratch can be generated. The plate was incubated at 37 ̊C in serum-free medium. The migration of cells into the wounded area was recorded every 4–6 h and photographed using an inverted microscope (magnification, x20).
Cell transwell assays. Cells (5 × 104) were re-suspended in serum-free medium and seeded at the upper chamber. 500 µl medium with 10% FBS was added to the lower portion of the chamber. After 24 h of incubation, cells were stained with crystal violet staining solution (Beyotime, Nantong, China) then counted and photographed (five views per well). All experiments were performed in triplicate.
Quantitative real-time PCR. RNA samples were isolated using TRIzol Reagent (Invitrogen), according to the manufacturer’s procedures. SYBR Green PCR reagents were purchased from Takara, and RT-PCR was performed following the manufacturer’s protocol in an ABI 7500 PCR machine (Applied Biosystems). The detailed primer sequences were listed in Table 1.
Western Blotting. Cell lysates were collected in SDS lysis buffer (ddH2O 37 ml, 10% SDS 10 ml, Ph7.5 Tris-HCL 3 ml). Protein concentration was tested by BCA protein assay according to manufacturers’ instruction (Thermo Fisher Scientific, USA). Proteins were loaded on 8–12% SDS-PAGE gel and transferred to PVDF membrane. Primary antibodies used for western blot analysis were CCND1(2978S, Cell Signaling Technology), CCND3(2936, Cell Signaling Technology), CDK4(12790S, Cell Signaling Technology),CDK6(3136S, Cell Signaling Technology), FOXM1(20459, Cell Signaling Technology), p-FOXM1(14655, Cell Signaling Technology) and beta-actin (AC-40)(Sigma-Aldrich, USA). Secondary antibodies used were HRP-linked goat anti-rabbit/mouse IgG (Cell Signaling technology, MA). Immune complexes were visualized with ECL Western Blotting Detection Reagents (Merck Millipore, USA) and captured with an image Reader (Amersham Imager 600, GE healthcare Life Sciences).
Dual-luciferase reporter system analysis. The 3’UTR sequence of CCND1 weas subcloned into the pSicheck2-control vector (Promega) to construct pSicheck2-CCND1-WT. QuickChange sitedirected mutagenesis kit (TOYOBO) was used to construct the specifically mutated CCND1 gene 3’UTR fragment, which named vectors, pSicheck2-CCND1-Mut1, pSicheck2-CCND1 -Mut2, pSicheck2-CCND1-Mut1 + 2, respectively. Co-transfect the vectors, miR-20b-5p mimics and control to 293T cells by using Lipofectamine 2000 (Invitrogen), harvest the cells in 48 h and analyzed for luciferase activity using Dual-luciferase reporter assay system (Promega) according to the manufacturer’s instructions. Transfection was repeated three times in triplicate.
Subcutaneous xenograft mouse models. HCT116 which stably transfected with miR-20b-5p expression vector or control vector (1 × 107 cells/0.2 mL PBS) were injected subcutaneously into the left and right flanks of 6-week-old female Balb/c nude mice (n = 6/group), respectively. Tumor size was measured every 2 days for 4 weeks using a digital caliper. Tumor volume (mm3) was estimated by measuring the longest(L) and shortest(W) diameters of the tumor and use the following formula to calculate (tumor volume = L*W2/2). At 4 weeks after implantation, the mice were sacrificed and the weights of their xenograft tumors were determined. The excised tissues were fixed in 10% neutral-buffered formalin for further investigation.
Immunohistochemistry. The excised tumor tissues were fixed in 10% neutral-buffered formalin, and then 4% paraformaldehyde-fixed paraffin-embedded tumor were stained with CCND1(2978S, Cell Signaling Technology) antibody at a concentration of 1:100.
Microarray analysis. HCT-116 cells were transfected with miR-20b-5p-NC and miR-20b-5p-mimics according to the manufacture of lipofectamine 2000. 48 h later, total RNA was extracted using TRIzol Reagent (15596-018; Life Technologies), following the manufacturer’s instructions. Array hybridization (901229) and scan (00-00212; both from Affymetrix) were performed according to the manufacturer’s instructions. Raw data were normalized using MAS 5.0 algorithm, Gene Spring Software 11.0 (Agilent Technologies, Santa Clara, CA).Gene function classification and KEGG analysis were performed.
Bioinformatics prediction. The method we used to predict the related potentially target CCND1 was according to the prediction of the bioinformatical software online including Target Scan (www.targetscan.org) and miRDB(www.mirdb.org).
Statistical Analysis. The results are expressed as the mean ± SEM. Statistics were performed using GraphPad Prism 8.0 software. Unpaired Student’s t tests (only two groups), One-Way ANOVA (more than two groups) and Two-Way ANOVA (for tumor growth analysis) were used to calculate P values where appropriate. P < 0.05 was considered statistically significant. Error bars indicate the standard deviation in all the Figures.
Table 1
Primer sequences used in the present study.
miR-20b-5p-5p forward | 5’- ACACTCCAGCTGGGCAAAGTGCTCATAGT − 3’ |
miR-20b-5p-5p reverse | 5’- TGGTGTCGTGGAGTCG − 3’ |
U6 forward | 5’-CTCGCTTCGGCAGCACA-3' |
U6 reverse | 5’-AACGCTTCACGAATTTGCGT-3’ |
CCND1 forward | 5’-AGTTCATTTC- CAATCCGCCC-3’ |
CCND1 reverse | 5’-TTTCCGTGGCACTAG- GTGTC-3’ |
E2F1 forward | 5’-CAAGAAGTCCAAGAACCACATCC-3’ |
E2F1 reverse | 5’-AGATATTCATCAGGTGGTCCAGC-3’ |
CDK4 forward | 5’- GCCCTCAAGAGTGTGAGAGTC-3’ |
CDK4 reverse | 5’- CACGAACTGTGCTGATGGGA-3’ |
CDK6 forward | 5’-GGACTTTCTTCATTCACACCG − 3’ |
CDK6 reverse | 5’- GACCACTGAGGTTAGGCCA-3’ |
GAPDH forward | 5’- ACCTGACCTGCCGTCTAGAA − 3’ |
GAPDH reverse | 5’- TCCACCACCCTGTTGCTGTA-3’ |