Plant materials and growth conditions
The OsWRKY76-knockout mutants and OsbHLH148-knockout mutants in the background of rice variety ZH11 (Oryza sativa L. ssp. japonica) were obtained from a mutant library (BIOGLE, Changzhou, Jiangsu, China) using a CRISPR/Cas9 genome editing approach. All homozygous T3 seedlings (w76-1, w76-2, b148-1, and b148-2) were used for this study. All rice seedlings were planted in a growth room with a cycle of 14 h light at 30°C and 10 h dark at 26°C.
Drought-tolerance Assays And Treatments
For analysis of drought stress tolerance, 2-week-old seedlings of wild-type ZH11 rice and OsWRKY76-knockout mutants (w76-1 and w76-2) were transferred to the hydroponic culture medium with or without 20% PEG 6000 for 10 days, and their survival rates were counted after recovery for 10 days. To further test the effect of OsWRKY76 on drought tolerance, 10-day-old seedlings of wild-type ZH11 rice and OsWRKY76-knockout mutants (w76-1 and w76-2) grown in soil suffered from drought stress for one week by stopping irrigation until the leaves of wild-type ZH11 were completely wilted. After recovery with rewatering for one week, the survival rates of the plants were counted visually.
For drought stress and MeJA treatments, two-week-old ZH11 seedlings were treated under dehydration stress (air-dried), 20% PEG 6000 treatment, and MeJA (100 µM) treatment. The leaves of the ZH11 seedlings were harvested at different time points after treatment.
For the analysis of MeJA on seed germination, seeds of wild-type ZH11 rice and OsWRKY76-knockout mutants (w76-1 and w76-2) were germinated on 1/2 MS medium containing 0, 5, or 50 µM MeJA for 3 days, and then germination was scored. To determine the effect of MeJA on seedling development, 1-d-old seedlings of wild-type ZH11 rice and OsWRKY76-knockout mutants (w76-1 and w76-2) were transferred to 1/2 MS medium containing 0, 5, or 50 µM MeJA for 5 days, and then shoot length and root length were measured.
Rt-qpcr Analysis
Total RNA was extracted from rice leaves using TRIzol reagent (Tiangen, Beijing, China), and then reverse transcription was performed using a StarScript II RT Kit with gDNA Remover (Genstar, Beijing, China). RT-qPCR was performed with the SYBR Green-based Fast Mixture (Genstar, Beijing, China) using an Mx3005P instrument (Stratagene, La Jolla, CA, USA). Relative expression levels of genes were calculated by normalization to OsActin and Ubiquitin5 genes (Mao et al., 2019).
Dab Staining
To determine the presence of H2O2 in the rice leaves, DAB staining was performed using two-week-old rice seedlings of wild-type ZH11 rice and OsWRKY76-knockout mutants (w76-1 and w76-2) with or without dehydration treatment. The rice leaves were cut into 2-cm pieces, immersed in 1 mg ml–1 DAB in 50 mM Tris–acetate buffer (pH 5.0), and then vacuum infiltrated for 40 min. After incubation at 30°C for 3 h in the dark, the rice leaves were immersed in 95% ethanol until the chlorophyll was completely removed.
Yeast Two- And Three-hybrid Assays
The full-length CDSs of OsbHLH148, OsJAZ7, OsJAZ8, OsJAZ11, and OsJAZ12 were cloned and fused into the vector pGADT7 (AD) to generate AD-OsbHLH148, AD-OsJAZ7, AD-OsJAZ8, AD-OsJAZ11, and AD-OsJAZ12, respectively, as prey. The full-length CDSs of OsWRKY76 and OsbHLH148 were inserted into the vector pbridge (BD) to form BD-OsWRKY76 and BD-OsbHLH148, respectively, as bait. In the yeast three-hybrid assay, the full-length CDSs of OsWRKY76 were inserted into the BD-OsbHLH148 vector to form BD-OsbHLH148-OsWRKY76 in which OsWRKY76 driven by the Met25 promoter was expressed in the absence of methionine. These prey and bait vectors were transformed into Y2HGold cells grown on SD/-Trp-Leu dropout plates for the yeast two-hybrid assay and into Y190 cells grown on SD/-Trp-Leu-Met dropout plates for the yeast three-hybrid assay. The positive transformants were grown on SD/-Trp-Leu and SD/-Trp-Leu-His dropout plates for the yeast two-hybrid assay, and β-galactosidase activity levels were detected for the yeast three-hybrid assay.
Bifc
To confirm the in vivo interaction between OsWRKY76 and OsJAZ12, a BiFC assay was performed. The CDSs of OsWRKY76 and OsJAZ12 were amplified and fused into the pxy103 (nYFP) and apXY105 (cYFP) vectors, respectively. Thus, OsWRKY76-nYFP and cYFP-OsJAZ12 fusion constructs were obtained. cYFP or cYFP-OsJAZ12 and nYFP or OsWRKY76-nYFP were transformed into Arabidopsis protoplasts (S. C. Wang et al., 2005). Fluorescence signals were analyzed using a Zeiss Axio Observer A1 (Carl Zeiss, Jena, Germany).
Gal4-dependent Chimeric Transactivation Assay
To determine OsbHLH148 transcriptional activity, we created a recombinant effector vector encoding the GD-OsbHLH148 fusion protein. Moreover, the full-length CDSs of OsWRKY76 and OsJAZ12 were cloned into the effector vector without GD. Combinations of these effector vectors, reporter vector (35S-Gal4:FLUC), and internal control (35S:RLUC) were transformed into rice protoplasts followed by incubation at 30°C for 15 h in the dark to allow transient expression. FLUC and RLUC activities were measured using a Dual-Luciferase reporter assay system (Promega, Madison, Wisconsin, USA).
Yeast One-hybrid Assay
The yeast one-hybrid assay was performed as previously described (Lin et al., 2007). An upstream 2000-bp sequence of OsDREB1E’s start codon as a promoter sequence of OsDREB1E was cloned and fused into the pLacZi2µ vector to generate OsDREB1Epro:LacZ. The full-length CDSs of OsWRKY76 and OsbHLH148 were ligated into the pJG4-5 (GAD) vector to form GAD-OsWRKY76 (GAD-W76) and GAD-OsbHLH148 (GAD-b148), respectively. The GAD, GAD-W76, and GAD-b148 constructs were separately co-transformed with the OsDREB1Epro:LacZ vector into the yeast strain EGY48. The positive transformants were identified using SD/-Trp-Ura dropout plates containing X-Gluc for blue color development.
EMSA
EMSA was conducted as previously described (Gao et al., 2019). The full-length CDS of OsWRKY76 was inserted into the pGEX-4T-3 vector to fuse it to the GST coding region and to create a recombinant vector encoding a GST-WRKY76 fusion protein. The recombinant vector and empty GST vector were then transformed into the E. coli strain BL21 (DE3), which was purified using GST Resin. The 6-FAM 5’ end-labeled and unlabeled OsDREB1E probe was synthesized by a Bio-Tech Company (Sangon, Shanghai, China). Fluorescence signals in the gel were detected using a Tanon 5200 Multi imaging system (Tanon, Shanghai, China).
Dual-luciferase Assay
The OsDREB1E promoter was cloned into the double vector pGreenII 0800-LUC, in which the OsDREB1E promoter was fused with the FLUC reporter gene, and the Renilla luciferase gene was driven by the 35S promoter as an internal control. The full-length CDSs of OsWRKY76 and OsbHLH148 were inserted into pCAMBIA1300 as the effector vector. The effector vectors were co-transformed with the double vector into rice protoplasts, followed by incubation at 30°C for 15 h in the dark to allow transient expression. The transformed protoplasts were treated with and without 10% PEG 6000 treatment for 20 min. The FLUC and RLUC activities were measured with a Dual-Luciferase reporter assay system (Promega, Madison, Wisconsin, USA).
Primers And Accession Numbers
The sequences of all primers used for this study are listed in Table S1. The sequence data from this study can be found in the Rice Genome Annotation Project Database (http://rice.uga.edu./), and the accession numbers of genes are listed in Table S2.