THP-1 Monocytic Cell Culture and Stimulation
THP-1 cells were obtained from the American Type Culture Collection (ATCC) and cultured according to their recommendation 17–19. In brief, cells were maintained in RPMI-1640 culture medium supplemented with 10% fetal bovine serum, 2 mM glutamine, 1 mM sodium pyruvate, 10 mM HEPES, 100 ug/ml Normocin, 50 U/ ml penicillin, and 50 µg/ml streptomycin (Gibco, Life Technologies, Grand Island, NY, USA). For experimentation, cells were plated in 12-well plates (Costar, Corning Incorporated, Corning, NY, USA) at 1 × 106 cells/well (unless indicated otherwise). Cells were then stimulated for 24 hours with 10ng/ml TNFα (R&D Systems, Minneapolis, MN, USA) or 0.1% BSA as vehicle control. All cultures were incubated under recommended cell culture conditions at 37°C (with humidity) in 5% CO2. At the endpoint of the experiment, cells were harvested for RNA isolation, and the conditioned medium was used for the determination of MMP-9 secreted protein. For NF-kB/AP-1 reporter cells, cells were cultured in complete RPMI medium with the addition of zeocin (200 µg/ml) as a selective factor (InvivoGen, San Diego, CA, USA).
THP-1-Derived Macrophages
THP-1 monocytic cell-derived macrophages were generated as previously described by stimulating them with 50 ng/ml phorbol 12-myristate 13-acetate (PMA) 20. The treated cells were then incubated at 37°C (under humidity) in 5% CO2 for 48 hours, and the morphological presentation of the cells was monitored throughout. Upon cells' transformation and adherence, the culture medium was removed and replaced by fresh media. Transformed macrophages were treated with TNF-α or vehicle as mentioned previously.
Real-Time Quantitative Polymerase Chain Reaction (PCR)
Total RNA was isolated from cultured cells using RNeasy Mini Kit (Qiagen, Valencia, CA, USA), according to the manufacturer’s instructions. cDNA synthesis was carried out using 1 µg of the total RNA isolated through the use of a high-capacity cDNA reverse transcription kit (Applied Biosystems, Foster City, CA, USA). 500 ng cDNA was then amplified, and the gene expression of (MMP-9, Hs00234579_m1 ; ACSL1, Hs00960561; and GAPDH, Hs03929097_g1) was conducted through the use of TaqMan® Gene Expression Master Mix (Applied Biosystems, Foster City, CA, USA) according to manufacturer’s instructions 20–23. The threshold cycle (Ct) was normalized to the house-keeping gene GAPDH, and the expression of the target gene was calculated relatively to control using the ΔΔCt-method 24–27. Relative mRNA expression was visualized as fold expression over the average of control gene expression, with the control treatment assumed to be 128. The data is presented as mean standard error of the mean (± SEM), and statistical analyses were deemed significant at p < 0.05.
MMP-9 Determination
Sandwich ELISA was used according to the manufacturer's instructions (R&D Systems, Minneapolis, MN, USA) to find MMP-9 protein in the supernatants of treated cells.
Gelatin Zymography
Gelatin zymography was used to detect the gelatinase activity of MMP-9 as previously described and in accordance with BioRad technology 29. In brief, the collected conditioned medium from treated cells was mixed with zymogram sample buffer containing (62.5mM Tris-HCl, pH.6.8, 25% glycerol, 4% SDS and 0.01% bromophenol blue) and wad subjected to electrophoresis on 10% polyacrylamide gel with gelatin (10% Ready Gel® Zymogram Gel, Biorad) as the substrate. After electrophoresis was completed, the gel was incubated for 1 h at room temperature in a 2.5% Triton X-100 solution and treated with a zymogram developing buffer containing 50mM Tris-HCl, pH 7.5, 200mM NaCl, and 5mM CaCl2 at 37°C for 24 hours. The gels were stained with 0.5% Coomassie Brilliant Blue R-250, 40% Methanol, 10% Acetic Acid solution for 2 hours, followed by destaining step in 40% Methanol, and 10% Acetic Acid solution to visualize the bands. Proteolytic activity was indicated by the presence of clear bands against the blue background of the stained gel.
siRNA Transfections
We performed small interfering RNA (siRNA) transfection, as previously described by Al-Roub et al 30. Briefly, we washed THP-1 monocytic cells and resuspended them in nucleofector solution (100 µl; Amaxa Nucleofector Kit V). We transfected the cells separately with siRNA against ACSL1 (30 nM; OriGene Technologies, Inc., city, MD, USA), scramble siRNA (30 nM; OriGene Technologies, Inc., city, MD, USA), and pmaxGFP (0.5 ug; Amaxa Nucleofector Kit V for THP-1cells, Lonza, city, country). We performed all transfection experiments with an Amaxa Cell Line Nucleofector Kit V for monocytic cells (Lonza, city, Germany) using an Amaxa Electroporation System (Amaxa Inc., city, Germany)17. After 36 hours, we treated the siRNA transfected cells with TNFα. Next, after 24 hours, we harvested the monocytic cells and conditioned media. Lastly, we assessed the gene knockdown level of ACSL1 using real-time PCR.
Western Blotting
We performed Western blotting, as described earlier31. We first harvested treated and untreated THP-1 monocytic cells. Then, we treated the cells with lysis buffer (10X Lysis Buffer, Cell Signaling, USA) for 30 minutes. We resolved the lysates by 12% SDS-PAGE, as described earlier, 31 and transferred the cellular proteins to an Immuno-Blot PVDF membrane (Bio-Rad Laboratories, USA) by electroblotting. We blocked the Immuno-Blot PVDF membranes with 5% non-fat milk in phosphate buffered saline (PBS) for 1 hour. We then incubated the membranes with primary antibodies against p-44/42 mitogen-activated protein kinases (MAPK; ERK1/2), p-SAPK/JNK, p-c-Jun, p-NF-κB, and the respective unphosphorylated antibodies in 1:1000 dilution overnight at 4°C. We procured all primary antibodies from Cell Signaling (Cell Signaling Technology Inc., Danvers, MA, USA). We then washed the blots and incubated them for 1 hour with horseradish peroxidase-conjugated secondary antibody (Promega, Madison, WI, USA). We developed immunoreactive bands using an Amersham ECL Plus Western Blotting Detection System (GE Health Care, city, UK) and visualized them by Molecular Imager® VersaDocTM MP Imaging Systems (Bio-Rad Laboratories, Hercules, CA, USA).
Statistical Analysis
We performed statistical analyses on the GraphPad Prism software ( La Jolla, CA, USA). Data are presented as mean ± standard error of the mean (SEM). We used unpaired Student’s t-test and one-way ANOVA to compare means between groups. P-value < 0.05 was considered significant (*P < 0.05, ** P < 0.01, *** P < 0.001, and **** P < 0.0001).