Cell model
Macrophages were obtained as previously described (13). Briefly, the mononuclear cells were collected from the peripheral blood samples of human donors signed the written informed consent and preserved in a -80°C freezer. Then the mononuclear cells were cultured in RPMI 1640 medium (Thermo Scientific, Carlsbad, CA, USA) supplemented with 10% FBS and 50 ng/mL M-CSF (Solarbio, Beijing, China) at 37°C for one week, after which the differentiated macrophages were isolated. For induction of in vitro AS models, different concentration of ox-LDL (0, 50, 100, 150, 200 µg/ml) (R&D Systems, Minneapolis, MN, USA) was added into RPMI 1640 medium of macrophages for 24 h. Then different concentration of CTRP9 (0, 0.3, 1, 3 µg/ml) (R&D Systems, Minneapolis, MN, USA) was added for 24 h to explore its role in AS progression. The optimal concentrations of ox-LDL and CTRP9 were determined for the subsequent experiments.
Cell transfection
To validate the roles of various signaling pathways, si-CTRP9, si-USP22, and pcDNA3.1 containing the coding sequence of CTRP9, were obtained from GenePharma (Shanghai, China). The si-NC or empty vectors were served as controls. Cell transfection was performed through Lipofectamine 3000 (Invitrogen, Carlsbad, CA, USA) as per the manufacturer’s protocols.
Cell viability
Briefly, the cells were inoculated into a 96-well plate at a density of 2×104 cells per well, and then the cells were treated under various conditions, added with 10 µL of CCK-8 solution (Solarbio, Beijing, China) and incubated for 2 h at 37°C. The absorbance at 450 nm was measured using a microplate reader (PerkinElmer, Shanghai, China).
Immunofluorescence
Briefly, the cells were pre-treated with 4% paraformaldehyde, and then the cells were washed with PBS and maintained with 5% FBS at 37°C for 60 min. Thereafter, the samples were incubated with primary antibodies including anti-LC3 (ab192890, 1:1000) at 4°C overnight, followed by incubating with fluorescence-conjugated secondary antibodies (ab150077, 1:1000) in the dark for 60 min. The results were observed and analyzed by a BX53 fluorescence microscope (Olympus, Tokyo, Japan).
Oil Red O staining
After treated under various conditions, the cells were collected, pre-treated with 4% paraformaldehyde, and washed with PBS. Then the cells were maintained with 60% isopropanol for 5 min and stained with premixed Oil Red O (Solarbio, Beijing, China) for 30 min and hematoxylin for 30 s. Then results were observed by a CHBS phase-contrast microscope (Olympus, Tokyo, Japan).
Cholesterol concentration assay
The content of cholesterol was determined using the commercial kit (Solarbio, Beijing, China) as previously described (14). The colorimetric analysis was implemented to determine the concentration of total cholesterol (TC), cholesterol ester (CE) and free cholesterol (FC).
ELISA
The concentration of CTRP9 in the supernatant of cells were monitored using Enzyme-linked immunosorbent assay (ELISA, R&D Systems, Minneapolis, MN, USA) according to the manufacturer's protocols.
Cholesterol efflux analysis
Briefly, the fluorescence-labeled cholesterol was added into cells and incubated in the dark at 37°C overnight. After treated under various conditions, the supernatant was collected, the cell monolayer was lysed and mixed by pipetting, and the absorbance was detected at 482/515 nm. The cholesterol efflux was calculated as fluorescence intensity of supernatant / (fluorescence intensity of supernatant + cell lysate) * 100%.
Cycloheximide assay
Briefly, the cells were treated with 10 µg/ml cycloheximide (CHX) for the indicated times (0, 2, 4, 6 and 8 h). Then the level of Sirt1 protein was detected by western blotting and quantified by quantity-one software.
RT-qPCR
The total RNA was isolated using TRIzol reagent (Invitrogen, Carlsbad, CA, USA). According to the instructions of reverse transcription reagent kit (Sangon Biotech, Shanghai, China), the cDNA was obtained, and the amplification was implemented on the ABI quantitative PCR system (Applied Biosystems, Waltham, MA, USA) for detecting RNA expression. The PCR conditions were as follows: denaturation at 95°C for 10 min, followed by 35 cycles of denaturation at 94°C for 20 s, annealing at 60°C for 30 s and extension at 72°C for 30 s. The relative expressions of mRNA were calculated using 2−ΔΔCt method. The primers were list as follows:
USP22-F: 5’- CTCCTGTCTGGTCTGTGAGATG -3’
USP22-R: 5’- CAGCAACTTATACGGGATGTGA -3’
Sirt1-F: 5’- CATAGACACGCTGGAACAGG -3’
Sirt1-R: 5’- GCAGATGAGGCAAAGGTT -3’
GAPDH-F: 5’- GACAAGATGGTGAAGGTCGG -3’
GAPDH-R: 5’- CATGGACTGTGGTCATGAGC -3’
Western blotting
The total proteins were extracted using RIPA lysis buffer (Solarbio, Beijing, China). After centrifugation, the supernatant was obtained, and the concentration of proteins was detected by BCA Assay Kit (Sangon Biotech, Shanghai, China). Then proteins were separated by 10% SDS-polyacrylamide gel electrophoresis (SDS-PAGE, Sangon Biotech, Shanghai, China) gel. The proteins were transferred to polyvinylidene fluoride (PVDF) membranes (Millipore, Billerica, MA, USA), and blocked with 5% non-fat milk. The samples were incubated with primary antibodies that included anti-USP22 (ab195289, Abcam, 1:1000), anti-Sirt1 (ab110304, Abcam, 1:1000), anti-LC3I/II (ABC929, Millipore, 1:1000), anti-SQSTM1 (ab109012, Abcam, 1:1000), anti-tubulin (ab7291, Abcam, 1:1000) at 4°C overnight. Next, the membrane was incubated with HRP-conjugated rabbit anti-mouse IgG secondary antibody (ab6728, 1:1000) for 2 h at room temperature. The band density was quantified using the using ImageJ software (US National Institutes of Health, Bethesda, MD, USA).
Statistical analysis
The quantitative data were presented as the mean ± standard deviation (SD). All statistical analyses were performed using GraphPad Prism 7.0. Student’s t test was conducted for comparison between two groups. One-way analysis of variance followed by Tukey’s post hoc test for comparison among three or more groups. P<0.05 were statistically significant. All the experiments were performed in triple.