Ethics Statement
Usage of animal specimens in this study was approved by the Ethical Committee of the National Institute for Viral Disease Prevention and Control (IVDC), China CDC. Animal housing and experimental protocols were in accordance with the Chinese Regulations for the Administration of Affairs Concerning Experimental Animals.
Antibodies and reagents
Commercially supplied the antibodies in this study include mAbs for PrP (Santa Cruz, sc-58581, USA), NeuN (Merck Millipore, MAB377, USA), GFAP (GeneTex, GTX34759, USA), Iba1 (Sigma, SAB2702364, USA), HK2 (Abcam, ab209847, UK; Cell Signaling Technology, 2867, USA), PFKFB3 (Abcam, ab181861, UK), PKM1 (Cell Signaling Technology, 7067, USA), PKM2 (Cell Signaling Technology, 4053, USA), AMPKa (Cell Signaling Technology, 2532, USA), pAMPKa (Cell Signaling Technology, 2535, USA), YAP (Cell Signaling Technology, 14074, USA), pYAP (Cell Signaling Technology, 4911, USA), OXPHOS (Abcam, ab110413, UK), PI3 (Abcam, 191606, UK), AKT (Santa cruz, sc-5298, USA), pAKT (Cell Signaling Technology, 4060, USA), mTOR (Cell Signaling Technology, 2983, USA), pmTOR (Cell Signaling Technology, ab2974, USA).
The reagents used in this study include PBS (Sinodetech scientific, CBS004-BR500, China), DMEM (GIBCO, 25200056, USA), penicillin streptomycin (Thermo Fisher Scientific, 15140122, USA), trypsin (GIBCO, 25200056, USA), AICAR (Selleck, S1802, USA), Dorsomorphin (Selleck, S7306, USA), resveratrol (Sigma, PHL89539, USA), RIPA (Beyotime, P0013B, China), Protease Inhibitor Cocktail (Merck Millipore, 535140-1SET, Germany), XFe96 FluxPaks (Agilent, 102416-100, USA), 96-well cell culture plate (Nunc, 165306, USA), Seahorse XF Calibrant Solution (Agilent, 100840-000, USA), Seahorse XF Base Medium (Agilent, 102353-100, USA), Glucose (Sigma, G7528, USA), L-glutamine (Sigma, G8540, USA), Sodium pyruvate (Sigma, S8636, USA), Oligomycin (Abcam, ab141829, UK), 2-DG (Sigma, D8375, USA), FCCP (Sigma, C2920, USA), Antimycin (Abcam, ab141904, UK), Rotenone (Sigma, R8875, USA).
Scrapie infected rodent models
The brain samples of Syrian golden hamsters inoculated intracerebrally with hamster-adapted scrapie agent 263K, those of C57BL/6 (C57) mice inoculated intracerebrally with two types of mice-adapted scrapie strains 139A and ME7, were enrolled in this study [12]. The bioassay procedures, the clinical, neuropathological, and pathogenic features of these infected animals were described previously [ref]. The average incubation periods of 263K-infected hamsters, 139A- and ME7-infected mice were 80.1 ± 5.7, 183.9 ± 23.1 and 184.2 ± 11.8 days, respectively. Age-matched healthy hamsters and mice were used as control.
Preparation of brain homogenates
Brain homogenates were prepared according to the procedure described previously [ref]. Brain tissues from the scrapie-infected and healthy rodents were washed in PBS for three times, and 10% (w/v) brain homogenates were prepared in cold lysis buffer (100 mM NaCl, 10mM EDTA, 0.5% Nonidet P-40, 0.5% sodium deoxycholate, 10 mM Tris, pH 7.5) containing a mixture of protease inhibitors (Merck, 539134, US). The tissue debris were removed with low-speed centrifugation at 2000 g for 10 min and the supernatants were collected for further study.
Cell culture and cell lysates
Cell line SMB-S15 and its normal partner cell line SMB-PS were provided by Roslin institute, U.K. The cell line SMB-S15 was established originally by culture from brains taken from mice clinically affected by Chandler scrapie strain, in which PrPSc replicates consistently itself along with cell passages [ref]. Cell line SMB-PS was established from the SMB-S15 cells treated with pentosane sulfate (PS) that completely removed PrPSc propagation and its infectivity in bioassays [ref]. SMB cell lines were cultured in Dulbecco’s modified Eagle’s medium (DMEM) with 10% fetal bovine serum (FBS) at 33°C humidified atmosphere with 5% CO2.
The preparation of cellular lysates of SMB cells were described elsewhere [ref]. Briefly, cells were washed with PBS, digested by pancreatic enzyme, and harvested by centrifugation at 5000 rpm for 3 min. The cell pellets were lysed for 2 h in RIPA buffer with protease inhibitor cocktail set III, followed by centrifugation at 5000 rpm for 3 min and the supernatants were collected.
Drug treatment upon cultured cells
SMB-S15 cells were passaged on a 6-well cell plates. 24 h after passage, cells were exposed to 1000 µM AICAR (AMPK activator) or 10 µM Dorsomorphin (AMPK inhibitor) for 6 h and 12 h. The drug treated SMB-S15 cells, we well as untreated SMB-S15 and SMB-PS cells, were harvested for further study.
Mitochondrial isolation
Isolations of the mitochondrial fractions were performed on ice or at 4°C. Approximately 8 × 106 cells were scraped, washed once with mitochondrial isolation buffer (MIB, 10 mM Tris, 200 mM sucrose, 1 mM EGTA, pH 7.5) containing freshly prepared 1 × protease inhibitor cocktail. Cells were resuspended in 1 ml MIB and broken about 35 times by 2 ml needles. The lysates were centrifuged at 500 × g for 10 min. The supernatants were collected and centrifuged at 7000 × g for 10 min. The mitochondria in the spherules were washed once with MIB and centrifuged at 10000 × g for 10 min. The pellets were suspended in 300 µl MIB and the protein concentrations were determined by BCA method.
Western blot
Protein samples were separated by 12% SDS-PAGE and electroblotted onto nitrocellulose membranes. Membranes were blocked in TBS containing 0.1% Tween 20 (TBST) with 5% skimmed milk at room temperature (RT) for 2 h and then incubated with primary antibodies at 4 ℃ overnight. After washing with TBST three times, the membranes were incubated with horseradish peroxidase (HRP) conjugated secondary antibodies at RT for 2 h. The blots were developed using enhanced chemiluminescence (ECL) system. Images were captured by ChemiScope 6000 (CLiNX) and quantified by Image J software.
Immunohistochemical assay (IHC)
Brain tissues were fixed in 10% buffered formalin solution and paraffin sections (5 µm in thickness) were prepared routinely. Sections were repaired under high temperature with 1% sodium citrate solution in microwave for 30 min and quenched for endogenous peroxidases with methanol containing 3% H2O2 for another 10 min. After blocking in 5% bovine serum albumin (BSA) at RT for 15 min, the sections were incubated with various primary antibodies, including 1:300-diluted mAb for PFKFB3 and HK2 at 4°C overnight. Subsequently, the sections were incubated with 1:200-diluted HRP-conjugated goat anti-mice or HRP-conjugated goat anti-rabbit secondary antibody at 37 ℃ for 1 h and visualized by incubation with 3,3-diaminobenzidine tetrahydrochloride (DAB). The sections were counterstained with hematoxylin, dehydrated, and mounted in permount. For detection of PrPSc, the brain sections were exposed to the buffer containing 4 M guanidinium isothiocyanate (GdnSCN) at 4 ℃ for 1 h prior to the routine IHC process.
Immunofluorescent assay (IFA)
To label cell membrane structure, cell lines SMB-PS and -S15 were incubated with 5.0 µg/ml Texas Red®-X-conjugated wheat germ agglutinin (WGA) at 33°C for 1 h. After washing with PBS, SMB cells were fixed with 4% paraformaldehyde at RT for 20 min, followed by treatment with 0.4% Triton X-100 for 5 min and blocked with PBS containing 5% BSA for 2 h. Subsequently, fixed cells were incubated with primary antibodies, including 1:200-diluted mAb for PFKFB3, 1:200-diluted pAb for HK2, 1:200-diluted mAb for pAMPKa at 4 ℃ overnight. After washing, fixed cells were incubated with 1:200-diluted Alexa Fluor 488-labeled goat-derived anti-rabbit or Alexa Fluor 568-labeled goat-derived anti-mice antibodies at RT for 1 h. Further, sections were incubated with 1 µg/ml DAPI at RT for 5 min. The sections were sealed, and the images of the targeting proteins were analyzed by high-solution confocal microscope (Leica, Germany).
Brain tissue slices were permeabilized with 0.4% Triton X-100 for 30 min and blocked with BSA at RT for 1 h. After blocked, sections were incubated with 1:200-diluted mAb for PFKFB3, 1:200-diluted pAb for HK2, 1:200-diluted mAb for pAMPKa, 1:200 diluted mAb for NeuN, 1:200 diluted pAb for Iba1, 1:200 diluted mAb for GFAP at 4°C overnight. Slices were incubated with corresponding secondary antibodies and DAPI according to the above procedures. The images were analyzed by high-solution confocal microscope (Leica, Germany).
Measurement of oxygen consumption rate (OCR) and extracellular acidification rate (ECAR)
Cellular OCR and ECAR were determined by the Seahorse XF96 Extracellular Flux Analyzer (Agilent Seahorse Bioscience) in accordance with manufacturer’s protocol. Cell lines SMB-S15, -PS and -RES were separately inoculated on XF96 microplates (10000 cells/well) till approximately 80% abundance. The culture medium was changed and washed with the test medium (Seahorse XF Base Medium with 25 mM glucose, 4 mM L-glutamine and 1 mM sodium pyruvate) for 3 times. Cells were stored in a non-CO2 incubator in an unbuffered assay medium (Antitron) for 60 min before measurement. Cellular OCR was detected with XF Cell Mito Stress Test Kit (Agilent). After baseline recording, cells were received with 2 µM oligomycin, 0.5 µM FCCP and 1 µM rotenone/1 µM antimycin A successively. Cellular ECAR was evaluated with XF Cell Glycolysis Test Kit (Agilent, 103020). The culture medium was changed and washed with the test medium (Seahorse XF Base Medium, 4 mM L-glutamine) for 3 times. After baseline recording, cells were received with 25 mM glucose, 2 µM oligomycin and 50 mM 2-DG successively. The data each preparation was automatically counted by the Analyzer and the values of the cellular OCR and ECAR were normalized with the cell numbers.
Statistical analysis
Statistical analysis was conducted using the SPSS 22.0 statistical package. Quantitative analysis of immunoblot images, the positive staining in IHC and fluorescent intensity in IF assays were carried out using software Image J. Quantification of IFA was represented as integral optical density (IOD) that is the sum of the reaction intensities of all selected objects in the field of view. All experiments in the present study were conducted at least three times with consistent results. All data were presented as the mean + SEM. The p values for differences between two groups were determined by two-tailed Student’s t test. The p values were described as *** (p < 0.001), ** (p < 0.01), * (p < 0.05) and ns (not significant).