Generation of Sohlh2 CKI mice
Sohlh2loxP/loxP and SftpcCreERT2+ mice were both purchased from Cyagen (Suzhou, China). To generate mice with tamoxifen-inducible Sohlh2 expression specifically in AECIIs, Sohlh2loxP/loxP were crossed to SftpcCreERT2+ mice. To induce recombination by CreERT2, 5 consecutive intraperitoneal tamoxifen (100 mg/kg/dose; Sigma-Aldrich, MO, USA) injections, were given from 6 weeks of age. Sohlh2loxP/loxP SftpcCreERT2- mice were used as the control for experiments. All mice were kept in a controlled environment with 24~26°C, 50%~60% humidity, and 12h cycle of night and day. DNA samples were extracted from lungs obtained from Sohlh2loxP/loxPSftpcCreERT2- (Control) and Sohlh2loxP/loxPSftpcCreERT2+ (Sohlh2 KI) mice using DNeasy Blood and Tissue Kit (Qiagen, Germany), which were used for genotyping through PCR reactions and the subsequent resolution by agarose gel electrophoresis. The primer sequences are shown in Extended Data Table 1. All animal experiments and procedures in this study were approved by the Committee on Ethical Use of Animals of the School of Basic Medicine of Shandong University and were performed in compliance with all relevant ethical regulations.
HFD-induced murine lung fibrotic model
Briefly, 8-week-old mice were fed with HFD (Medicinece, Jiangsu, China) for 8 weeks and sacrificed for subsequent analysis. In parallel experiments, Mice were randomly divided into the Control/HFD, Sohlh2 KI/HFD, Control/HFD+NAC, and Sohlh2 KI/HFD+NAC groups. Each group contained 5 mice. Four-group mice were fed with HFD for 8 weeks, at the same time, the mice in Control/HFD+NAC and Sohlh2 KI/HFD+NAC groups were fed with 100μL NAC solution at the concentration of 30mg/mL every day for 8 weeks.
Bronchoalveolar lavage fluid (BALF) collection and cell count
Briefly, after the mice were euthanized, the lungs were lavaged with 0.8 mL ice-cold PBS for three times, and the BALF was collected. After centrifugation for 5min at 4°C, the supernatant was stored at -80°C for subsequent experiments. The sedimented cell pellets were re-suspended in 100μL PBS. The cell number was quantified by a hemocytometer, and cytospin slides were prepared using 40μL of the cell suspension with 160μL of PBS. Slides were stained using Wright-Giemsa staining, and the numbers of macrophages and neutrophils were counted in a total of at least 200 cells.
Isolation of murine AECIIs
The Control and Sohlh2 KI mice were euthanized by intraperitoneal injection of 1% pentobarbital, and a thoracotomy was performed. The lungs were excised and were digested in 2mL 1g/L trypsin (including DnaseI 0.01g/L). After filtration sequentially through a 200-mesh Nylon screen and centrifugation, the supernatant was discarded and the cell pellets were suspended in DMEM.
The lung cell suspension was inoculated into the petri dish coated with mouse IgG and incubated for 40min in a 5%CO2 cell incubator at 37℃. The liquid containing unadhered cells was sucked out and inoculated in another petri dish coated with mouse IgG and incubated for 40min at 37℃ for two times. Finally, the unadhered cells were sucked out and centrifugation, the supernatant was discarded and the cell pellets were suspended in DMEM, then cultured in a 5% CO2 cell incubator at 37℃. After 24 hours, ~90% of adherent cells were AECIIs. The morphological characteristics and growth of cells were observed by an inverted microscope every day.
Immunofluorescent staining of isolated AECIIs
Cells were fixed in a 4% fixative solution and permeabilized with 0.2% Triton X-100. After blocking, the cells were incubated with primary antibodies against SP-C (Affinity, USA), and then a fluorescent secondary antibody. Nuclei were stained with DAPI (Beyotime, Haimen, China). Images were obtained under a fluorescence microscope (Olympus, Tokyo, Japan) using CellSens Dimension software.
Flow cytometry analysis
For apoptosis analysis, cells were analyzed with Annexin V-FITC/PI Apoptosis Detection Kit (Vazyme, Nanjing, China). For analysis of ROS, mouse primary AECIIs and human A549 cells were untreated or treated with 300µM PA for 24h, then collected and suspended in 1mL PBS containing 2µM DHE (Beyotime, Haimen, China) in the dark for 30min at 37°C. After incubation, samples were examined by flow cytometry (CytoFLEX, Beckman Coulter, CA, USA), and the data were analyzed using CytExpert software (Beckman Coulter, CA, USA).
Real-time qPCR
The extraction of total RNA, generation of cDNA, and RT-qPCR were achieved as described in our previous study (17). Gene expression was measured by 2-ΔCt, and the relative gene expression was assayed by 2-ΔΔCt. Primers used in this study were synthesized by the Beijing Genomics institution (Beijing, China), and the primer sequences are shown in Extended Data Table 2.
Western blot analysis
Total proteins from the lung tissues or cells were extracted and analyzed using Western blot as described in our previous study (19). Frozen lung tissues were homogenized and lysed in RIPA buffer (Beyotime, Haimen, China) containing a protease inhibitor (Solarbio, Beijing, China). Nuclear and cytosol extracts were prepared using the Nuclear Protein Extraction Kit (Solarbio, Beijing, China), according to the manufacturer's instructions. Subsequently, these cellular fractions underwent Western blot assays. Histone H3 was used as a nuclear fraction marker, and β-Tubulin was used as a loading control for cytosol protein (20). The protein concentrations were measured with BCA Protein Quantification Kit (Vazyme, Nanjing, China). Samples mixed with the loading buffer were separated on a 10% SDS-PAGE gel. After transferring to polyvinylidene fluoride membranes (Millipore, Bedford, MA) by electrotransfer, the membranes were blocked with 5% non-fat milk at room temperature for 2h. The membranes were probed with appropriate primary antibody at 4°C overnight, followed by incubation with peroxidase-conjugated anti-rabbit (or anti-mouse) IgG antibody for 2h at room temperature. The interaction was monitored with a BeyoECL Star (Beyotime, Haimen, China). The antibodies used in the study are shown in Extended Data Table 3.
Cell culture and treatment
The human cell line A549 was purchased from the Cell Bank of Type Culture Collection of the Chinese Academy of Sciences (Shanghai, China), and was maintained in RPMI 1640 medium containing 10% FBS and 1% penicillin-streptomycin. For the stable overexpression or knockdown of Sohlh2 in A549 cells, DNA transfection was performed as previously described(21). Briefly, A549 cells were seeded at 25% confluence in 10-cm plates the day before transfection. Two days later, infected cells were selected with 1μg/mL puromycin (Sigma-Aldrich, MO, USA) for 2 weeks. The human A549 cells and mouse primary AECIIs were treated with 300μΜ PA, and the corresponding control group was treated with PBS. The cells were seeded on coverslips, which were pre-placed in 24-well plates. After the cell adheres to the coverslips, the cells were exposed to 300μΜ PA for 48h after pretreatment with or without 5mM NAC.
MDA assay
The up-right lung lobes of mice were homogenized in PBS at a ratio of 1:10 (weight: volume). A549 cells were collected and homogenized. The levels of malondialdehyde (MDA) in the lungs, serum, and A549 cell homogenate were assessed by corresponding kits following the manufacturer’s instructions (Jiancheng Bioengineering Institute, Nanjing, China).
ELISA assay
The contents of tumor necrosis factor-alpha (TNF-α), transforming growth factor-beta1 (TGF-β1), and interleukin-6 (IL-6) in BALF, cell culture supernatant, and the lung tissues were measured using ELISA kits (Excell Bio, Jiangsu, China). The contents were assayed by comparison of the optical density (450nm and 570nm) with the standard curve.
Histological analysis
After fixation with 4% paraformaldehyde (PFA) and paraffin embedding, lung sections (4μm) were used in hematoxylin and eosin (H&E), Masson's trichrome, immunofluorescence staining assays. For the immunofluorescence assay, 5% bovine serum albumin (BSA) was used to block the sections, after which the tissues were incubated with anti-Sohlh2, anti-α-SMA, and anti-FN overnight at 4°C. Then, a fluorescent secondary antibody was added for 1h at 37°C. The sections were covered with an antifade solution containing DAPI (Beyotime, Haimen, China). The fluorescence signals of the lung tissues were visualized with fluorescence microscopy (Olympus, Tokyo, Japan) using CellSens Dimension software. The antibodies used for immunofluorescence are shown in Extended Data Table 3.
TUNEL staining
TUNEL staining for the analysis of apoptosis was performed using One-step TUNEL In Situ Apoptosis Kit (Elabscience Biotechnology, TX, USA). Images were obtained under a fluorescence microscope (Olympus, Tokyo, Japan) using CellSens Dimension software. TUNEL-positive cells displayed green staining within the nucleus, and the number of TUNEL-positive cells was counted in three nonoverlapping microscopic fields by a blinded person under high power magnification and displayed as a percentage.
DHE staining
Intracellular ROS levels were quantitatively analyzed with dihydroethidium (DHE) (Beyotime, Haimen, China) by measuring fluorescent intensity. The cells were seeded on coverslips. The freshly prepared DHE (2μM) was incubated with the cells in the dark for 30min at 37°C. The fluorescent intensity was proportional to ROS levels, and images were captured with a fluorescence microscope (Olympus, Tokyo, Japan) using CellSens Dimension software.
After routine dewaxing and hydration of paraffin sections of mouse lung tissues, the sections were incubated with freshly prepared DHE (2μM) in the dark for 30 min at 37°C. After washing three times with PBS, a coverslip was placed on the section, and fluorescent images were captured using a fluorescence microscope (Olympus, Tokyo, Japan).
Transmission Electron Microscopy (TEM)
Fixatives for TEM sample preparation were composed of 4% paraformaldehyde, 2.5% glutaraldehyde, and 0.02% picric acid in 0.1M sodium cacodylate buffer. Murine lungs were inflated with 1.2mL TEM fixative and were then excised and transferred to a 50mL polypropylene tube containing 10mL TEM fixative. A TEM (FEI, OR, USA) was used to obtain images with an accelerating voltage of 200 kV. AECIIs were identified according to the appearance of lamellar bodies and the microvilli at the apical cell membrane.
ChIP assay
ChIP analysis was performed following a previously described protocol (22). A549 cells stably expressing Sohlh2 or control vector were prepared using a Simple ChIP Enzymatic Chromatin IP Kit (Cell Signaling Technology, MA, USA) following the manufacturer's guidelines. A549 cells were treated cross-linked with 37% formaldehyde at a final concentration of 1% at room temperature for 10 min. Fragmented chromatin was treated with nuclease and subjected to sonication. Chromatin immunoprecipitation was performed with rabbit anti-Sohlh2 antibody (Novus, CO, USA) and normal rabbit IgG. After reverse cross-linking and DNA purification, immunoprecipitated DNA was quantified by real-time PCR using UltraSYBR Mixture (CWBIO, Jiangsu, China) with primers for Sohlh2 binding sites in the p62 promoter. The human p62 promoter-specific primers used were as follows: forward 5’-GAAGCTCGGGGTGCGG-3’, reverse 5’-CGGTCCTGGGACTCCCTT-3′. Primers as negative control sites were 5’-TTTCGGAAGCGTTTTCCC-3’ and 5’-AGCGCGTTCATTCAGGAA-3’. Fold enrichment was calculated based on the threshold cycle (CT) value of the IgG control using the comparative CT method.
Luciferase reporter assay
A549 cells were cultured in a 24-well plate and transiently transfected with Sohlh2 overexpression plasmid, p62 promoter firefly luciferase reporter construct, and Renilla luciferase plasmid (Promega, WI, USA) using Lipofectamine2000 (Invitrogen, CA, USA). Luciferase activities were determined 48h after transfection using a dual-luciferase reporter assay system (Vazyme, Nanjing, China). Results were represented as the ratio of Firefly to Renilla luciferase activity and normalized to vector control.
Statistical analysis
All experiments were independently repeated three times. Results were shown as the mean ± SD values. All data were analyzed with GraphPad Prism 7 software (San Diego, CA, USA). The Student t-test was used to assess the significant difference between groups. In these analyses, P value < 0.05 was considered as a statistically significant difference.