PTEN expression is adversely related to UPR signature and PTEN deficiency synergizes with ATF6α to activate UPR signaling in PCa cells
To determine the correlation between PTEN expression and UPR signaling pathway in PCa, we have analyzed various PCa public datasets. As shown in Fig. 1a, 1b, gene set enrichment analysis (GSEA) was performed using microarrays from Gene Expression Omnibus (GEO) datasets (GSE3325 and GSE6919). The UPR gene signature was significantly enriched in PTEN-low tumors compared with PTEN-high tumors. Of note, ATF6α target genes (HSPA5 and PDIA6) were up-regulated in PTEN-low samples (Supplementary Fig. 1a, 1b).
To further confirm the relation between PTEN function and UPR activation, prostate-specific Pten knockout (Ptenflox/flox: Pb-Cre+, referred to herein as PtenPC–/– mice) mice were used. As shown in Fig. 1c, PTEN protein levels were significantly decreased in wild type (WT) mice under ER stress inducer tunicamycin (Tm) treatment. In addition, spliced ATF6α (ATF6α-N), and its target gene BiP were increased significantly after Tm treatment in PtenPC–/– prostate tissues than those in WT mice. To further verify the effects of PTEN on UPR activity, we next silenced PTEN with siRNA in DU145 and VCaP (PTEN-WT) cells and overexpressed PTEN in LNCaP and PC3 (PTEN-deficient) cells. Western blot showed that the protein levels of ATF6α and its target gene were increased after silencing PTEN expression, especially in the presence of Tm treatment in DU145 and VCaP cells (Fig. 1d and Supplementary Fig. 1d). In contrast, PTEN overexpression inhibited protein expression of ATF6α and its target gene induced by Tm in LNCaP and PC3 cells (Fig. 1e and Supplementary Fig. 1e). Similarly, real-time qPCR revealed that mRNA levels of the ATF6α target genes were suppressed by overexpression PTEN in LNCaP cells and activated by silence PTEN in DU145 cells (Fig. 1f, 1g and Supplementary Fig. 1f). Additionally, as shown in Fig. 1h, 1i, the BiP luciferase activity was highly induced by Tm. However, these activity effects of Tm were further enhanced by PTEN silencing in DU145 cells but decreased by PTEN overexpression in LNCaP cells. Collectively, these results demonstrated that ATF6α signaling was adversely related to PTEN expression.
Further analyses on The Cancer Genome Atlas (TCGA) and GSE29010 showed that UPR gene signature was enriched in PTEN-loss prostate tumors when compared with PTEN-WT prostate tumors (Supplementary Fig. 1g, 1h). We next analyzed the relationship between PTEN loss and expression of UPR target genes. As shown in Supplementary Fig. 1i, compared with target genes (ASNS, ATF3, ATF5) of PERK and target genes (HSPA13, SERP1) of IRE1α, the mRNA levels of ATF6α target genes (HSPA5, PDIA4)[24] were significantly increased in PCa tissues with PTEN loss. Collectively, these results supported that PTEN dysfunction can activate the ATF6α signaling.
Since ATF6α could be activated by PTEN knockout or knockdown, we aimed to confirm whether PTEN dysfunction participated in the activity of ATF6α signaling. As shown in Fig. 1j, the combination of PTEN silencing and ATF6α overexpression significantly increased mRNA levels of HERPUD1, SEL1L, and BiP in DU145 cells. However, the increase induced by PTEN silencing could be attenuated when ATF6α was silenced (Fig. 1k). Likewise, we identified that the increase of the luciferase activity of BiP promoter caused by PTEN knockdown could be further strengthened by introducing ATF6α (Fig. 1l) but abolished by silencing ATF6α in DU145 cells (Fig. 1m).
ATF6α protects against ER stress-induced cytotoxicity and promotes PCa progression in vivo
To define the function of ATF6α in PCa progression, we performed IHC in a cohort of 145 Chinese PCa cases from Qilu hospital with three tissue microarrays (TMAs). We found that ATF6α was expressed in both nucleus and cytoplasm. Of note, nuclear staining of ATF6α was frequently seen in PCa cases with high Gleason score. Representative image of IHC staining for nuclear ATF6α expression of PCa cases were shown in Fig. 2a. We showed a significantly positive correlation between nuclear ATF6α expression with Gleason score (Fig. 2b). Furthermore, high expression of ATF6α was significantly associated with poor clinical outcome (Fig. 2c). We also observed that the expression levels of ATF6α target genes were significantly higher in localized PCa than those in BPH tissues as shown in GSE46602 and GSE70768 (Supplementary Fig. 2a). And the Kaplan-Meier curve showed that patients with high levels of ATF6α target genes had a shorter biochemical relapse free survival rate than those with low expression (Supplementary Fig. 2b). In all, these results suggested that upregulation of ATF6α target gene was associated with PCa progression to advanced clinical states. To elucidate the biological functions of ATF6α in PCa cells, we designed siRNA against ATF6α. As shown in Supplementary Fig. 2c, 2d, transfection of siRNA constructs can significantly deplete ATF6α protein and mRNA levels in DU145 and LNCaP cells. We showed that Tm treatment resulted in decreased cell viability in DU145 and VCaP cells (Fig. 2d, 2e and Supplementary Fig. 2e, 2f) and the inhibitory effects of Tm on cell viability were further enhanced by treatment with ATF6α siRNA or its inhibitor (Fig. 2e and Supplementary Fig. 2f) but compromised by ATF6α overexpression (Fig. 2d and Supplementary Fig. 2e). Next, in vivo experiments demonstrated that, introduction of ATF6α into DU145 cells showed an increased tumor growth in the xenograft models when compared to its parental controls (998 ± 145.6mm3vs. 456 ± 93 mm3) (Fig. 2f, 2h). Moreover, the protein levels of ATF6α and its target genes in DU145-ATF6α group were relatively increased compared with that in DU145-vector group (Fig. 2i, 2j). Collectively, our data suggested that ATF6α contributes to PCa progression.
PTEN interacts with ATF6α and inhibits ATF6α activity
To elaborate on the effect of PTEN on ATF6α, we sought to determine whether ATF6α physically associates with PTEN. As shown in Fig. 3a, HA-PTEN co-precipitated with the full-length Flag-ATF6α (short for ATF6α(P)), but not the N-terminal of ATF6α (short for ATF6α(N)) in LNCaP cells. Interestingly, Tm diminished the interaction between HA-PTEN and ATF6α(P). Additionally, the endogenous interaction between ATF6α(P) and PTEN in DU145 cells dramatically decreased with the presence of Tm (Fig. 3b). Finally, to determine whether PTEN directly interacts with ATF6α, GST, and recombinant GST-ATF6α were used to pull down the lysates of HEK293T cells with HA-PTEN overexpression. As shown in Fig. 3c, GST-ATF6α, but not GST protein, interacted with PTEN. Together, these results demonstrated the direct interaction between ATF6α and PTEN.
Immunofluorescent staining analysis showed that the nuclear staining of ATF6α markedly increased when LNCaP cells were treated with Tm, whereas the staining of ATF6α in nucleus significantly decreased when PTEN was overexpressed (Fig. 3d, 3e). We then investigated whether PTEN could inhibit the transcriptional activity of ATF6α using a BiP promoter-luciferase system. As shown in Fig. 3f, introducing PTEN profoundly diminished the transcriptional activity of BiP promoter in LNCaP cells with overexpression ATF6α. Likewise, PTEN can significantly suppress the mRNA levels of HERPUD1, SEL1L, and BiP induced by ATF6α overexpression in LNCaP cells (Fig. 3g).
We then performed rescue experiments and the data showed that introduction of PTEN could decrease the cellular viability of LNCaP, PC3, VCaP and DU145. However, such decrease could be restored partly by ectopic overexpression of ATF6α, suggesting that ATF6α could promotes cell growth, at least in part, by deregulating PTEN (Fig. 3h and Supplementary Fig. 3a, 3b). Furthermore, overexpression of ATF6α could increase the cell viability of PCa cells with PTEN deficiency, which indicates that ATF6α may enhance cell growth independently of PTEN. Since BiP has been shown to control ATF6α export from ER through a dissociation mechanism[25], we next determined whether PTEN plays a role in their dissociation. The interaction between ATF6α and BiP was determined by immunoprecipitation. In consistent with the previous study, ATF6α dissociated from BiP when PCa cells were challenged with Tm. However, there was no visible change in dissociation when PTEN was overexpressed in LNCaP cells (Supplementary Fig. 3c) or knocked down in DU145 cells (Supplementary Fig. 3d). This suggested that PTEN cannot affect the dissociation between BiP and ATF6α.
ATF6 α activity was repressed by PTEN mediated-phosphatase activity
We subsequently explored the molecular basis by which PTEN inactivates ATF6α. Since PTEN is a protein phosphatase that inactivates protein function by dephosphorylation[26, 27], we first determined whether ATF6α could be phosphorylated or not in PCa cells. As shown in Fig. 4a, 4b, the tyrosine phosphorylation levels of ATF6α were dramatically increased when DU145 cells were stimulated by Tm. To define the exact phosphorylation site on ATF6α, we constructed several plasmids targeting the tyrosine sites of ATF6α. The results showed that compared with ATF6αWT, the expression levels of phosphorylated and spliced ATF6α were decreased more significantly in ATF6αY111A in the presence of Tm (Fig. 4c). Concordantly, real-time qPCR analysis demonstrated that the expression level of HERPUD1 was significantly decreased in ATF6αY111A group than ATF6αWT (Fig. 4d). In addition, PTEN only pulled down ATF6αWT but not ATF6αY111A, which suggests that Y111 is required for its interaction with PTEN (Fig. 4e). To examine whether PTEN dephosphorylates ATF6α or not, PTEN was silenced in DU145 (Fig. 4f) or overexpressed in LNCaP cells (Fig. 4g). The levels of phosphorylated ATF6α(P) were significantly increased in DU145 cells but decreased in LNCaP cells compared with their control. However, no observable change was detected in DU145 or LNCaP cells with mutant ATF6αY111A in response to PTEN knockdown or overexpression (Fig. 4f, 4g), indicating tyrosine residue Y111 is important for the phosphorylation of ATF6α.
To further confirm the specific phosphatase sites of PTEN for ATF6α inactivating dephosphorylation, we transfected LNCaP cells with a variety of PTEN expression constructs with mutations diagramed in Fig. 4h. These mutations include the protein phosphatase dead PTENY138L, the lipid phosphatase-dead PTENG129E, dual phosphatase-deficient PTENC124S, and PTENG129R constructs. After transfection with PTENG129E, the levels of phosphorylated ATF6α were reduced in LNCaP cells (Fig. 4i). In addition, none of the PTEN constructs affected ATF6αY111A phosphorylation levels (Fig. 4j). Collectively, these data indicated that PTEN inhibits ATF6α activation by dephosphorylation. To examine the functional consequence of PTEN-mediated dephosphorylation of ATF6α, we analyzed its nuclear translocation in DU145 cells. Our data showed that ATF6αWT, but not ATF6αY111A was transported into the nucleus in the presence of Tm (Fig. 4k). Furthermore, as shown in Fig. 4l, ATF6αY111A exhibited low transcriptional activity in both unstressed and stressed cells when compared with ATF6αWT, which was consistent with the results obtained from real-time qPCR of HERPUD1, SEL1L, and BiP (Fig. 4m). These results highlighted that PTEN-inactivity-mediated phosphorylation is required for the protein cleavage, nuclear translocation, and the subsequent transcription modulation of ATF6α.
ER stress induces PTEN protein instability through ATF6α and ATF6 α destabilizes PTEN protein via CHIP-mediated polyubiquitin
Since a significant decrease in PTEN protein levels were observed in mice prostate tissues in the presence of Tm (Fig. 1c), we then treated DU145 and VCaP cells with ER stress inducers in vitro. We found that there was a progressive reduction in PTEN expression in a time- and dose-dependent manner at the protein levels (Fig. 5a and Supplementary Fig. 4b) but not at the mRNA levels (Supplementary Fig. 4c), suggesting the potential of posttranslational modification. We then aimed to determine of which the UPR signaling pathways (ATF6α, PERK, and IRE1) was required for the decrease of PTEN expression by using MEFs from Atf6α, Perk, and Ire1 knockout mice. Our data showed that the reduction of PTEN protein levels caused by Tm challenge could be partly reversed in Atf6α−/− MEFs compared with those in Perk−/− and Ire1−/− MEFs (Fig. 5b). Similar effects were also observed when ATF6α, PERK or IRE1 was silenced in DU145 cells (Fig. 5c). However, PTEN protein levels could be rescued after introducing Atf6α into Atf6α−/− MEFs (Fig. 5d). Collectively, these results suggest that Tm-induced decrease of PTEN protein expression was mediated by ATF6α.
To characterize the inhibitory effect of Tm on PTEN expression, we treated DU145 cells with MG132 (a proteasome inhibitor) or leupeptin (a protease inhibitor). Our data showed that MG132, but not leupeptin, could rescue Tm-induced PTEN protein levels downregulation (Fig. 5e and Supplementary Fig. 4d). This suggested that PTEN protein undergoes degradation in a proteasome-dependent manner in the presence of Tm. Our results were consistent with previous report, which demonstrated that PTEN protein levels were regulated by both polyubiquitylation and monoubiquitylation[28]. Further analysis showed that more polyubiquitination in PTEN protein occurred in the presence of Tm stimulation or ATF6α overexpression in DU145 cells (Fig. 5f, 5g). Moreover, polyubiquitination of PTEN proteins could hardly be detected in Atf6α−/− MEFs when compared to WT (Fig. 5h). However, such decrease in polyubiquitination could be restored by introducing ATF6α into Atf6α−/− MEFs (Fig. 5h). These results confirmed that ATF6α plays an important role in PTEN degradation induced by Tm.
We further investigated the molecular mechanism by which ATF6α mediated PTEN suppression. It was previously reported that CHIP, NEDD4-1, XIAP, and WWP-2 [29–32] regulated PTEN by promoting protein degradation. To search for genes that participate in PTEN degradation induced by ATF6α, we performed real-time qPCR assay in DU145 cells treated with Tm. The data showed that the increase of CHIP mRNA levels in DU145 cells induced by Tm could be reduced by silencing ATF6α (Supplementary Fig. 4e). This result was also confirmed by western blot (Fig. 5i, 5j and Supplementary Fig. 4f). Furthermore, CHIP protein levels were decreased more significantly in Atf6α−/− MEFs, compared with those of Perk−/− and Ire1−/− MEFs (Supplementary Fig. 4g). However, such inability in Atf6α−/− MEFs could be rescued by introducing ATF6α (Fig. 5k). These data supported that ATF6α was important for protecting CHIP protein stability. We next aimed to assess whether ATF6α destabilizes PTEN protein via CHIP-mediated polyubiquitination. As shown in Fig. 5l, the knockdown of CHIP expression inhibited PTEN polyubiquitination induced by ATF6α in DU145 cells. Similarly, the decreased PTEN polyubiquitination caused by ATF6α knockdown could be reversed by introducing CHIP expression in DU145 cells (Fig. 5m).
To determine whether ATF6α directly regulates CHIP expression, we conducted a luciferase activity assay with CHIP promoter containing reporter plasmid. Our data showed that Tm treatment could significantly increase the transcriptional activity of CHIP promoter, which also could be enhanced by overexpressing ATF6α (Fig. 5n). It was previously reported that TGAC is the core sequence critical for ATF6α binding[33]. We aligned this sequence with CHIP promoter from − 2000 ~ + 300bp and found two perfectly matched sequences. We constructed two TGAC-mutant plasmids and performed transient transfection assays with Tm treatment. As shown in Fig. 5o, mutant construct failed to affect CHIP activity in the presence of Tm.
Combined inhibition of ATF6α and AKT synergistically delays PCa progression
In the context of PTEN inactivity, the most pronounced signaling event is the constitutive activation of AKT which associates with the UPR pathway[34]. Indeed, we identified that silencing ATF6α could attenuate the activation of PI3K/AKT pathway in DU145 cells (Fig. 6a). Similar effects were also observed in Atf6α−/− MEFs when compared with WT MEFs (Fig. 6b). Furthermore, the decreased activity of AKT signaling elicited by ATF6α deficiency was rescued by re-introducing ATF6α in Atf6α−/− knockout MEFs (Fig. 6c). Either PTEN silencing or ATF6α overexpression enhanced AKT activity in DU145 cells, and the combination of them was more effective in increasing AKT activity (Fig. 6d).
We then evaluated the potential benefit of co-targeting ATF6α and AKT in PCa cells. As shown in Fig. 6e and Supplementary Fig. 5a, combination of AKT inhibitor (AZD5363) with ATF6α inhibitor (Ceapin-A7) was more effective in inhibiting cell proliferation in DU145 and VCaP cells. Similar to the pharmacologic inhibition, siATF6α combined with AKT inhibitor treatment significantly reduced cell viability of PCa cells (Fig. 6f and Supplementary Fig. 5b).
To determine the impacts of AZD5363 and Ceapin-A7 on tumor growth, we have established DU145 xenograft model. As shown in Fig. 6g-6i, either AZD5363 or Ceapin-A7 treatment reduced the tumor volume, and a combination of AZD5363 and Ceapin-A7 induced further inhibition in tumor growth. The expression level of activated ATF6α was detected by western blot and real-time qPCR assay in these tumors (Fig. 6j, 6k). These results suggested that ATF6α inhibitor combined with AKT inhibitor would be useful for the treatment of PCa.