2.1 Sample
Patients with proven cervical carcinoma were requested to join this study, conducted between April 2016 and April 2018 at the Aldenora Bello Cancer Hospital and Tarquinio Lopes Filho Cancer Hospital, located in São Luis – Maranhão (Brazil).
Samples of tumor material were collected from 125 women with cervical cancer, with follow-up being carried out women, recording the oncological treatment, according to the protocol of the hospitals, until the when they returned for a consultation to evaluate the treatment performed.
The study was accepted by the Institutional Ethical Committee. All patients were informed and signed permission to participate before trial initiation.
2.2 Epidemiological data
Patients referred for outpatient care at the Gynecology Service Oncologists in these hospitals were invited to participate in this study, and the objectives of the study, if they accepted, they signed the Informe Consent Form (ICF) and were submitted to a questionnaire to collect the socio-demographic data.
The patients in whom the presence of a tumor was demonstrated in the biopsy of the uterine cervix and that met the inclusion criteria, were followed up after diagnosis, and collected treatment data in a Clinical Questionnaire recording performed oncological procedures (Surgery, Radiotherapy, Chemotherapy or otherwise performance), until your first follow-up return with tests to assess the response to the treatment performed.
2.3 Inclusion and exclusion criteria
The inclusion criteria was to be women over 18 years of age diagnosed with cervical cancer who agreed to participate in the research by signing an informed consent form.
The exclusion criteria were: Women with small lesions, in which the performance of the biopsy could interfere with the staging, women undergoing psychiatric treatment and women that refused to sign the informed consent form.
2.4 Experimental procedures
The collected samples containing tumor fragments were placed in microtubes, containing one ml of RNA Later and transported in thermal boxes at 4°C and sent to the Multiuser Laboratory located in the Biobank of Tumors and DNA of the Maranhão following registration and storage protocols. After 24 hours, the sample was RNA was removed later and stored in a freezer at -80°C until the procedures were performed laboratory.
Extraction of genomic DNA from frozen samples was performed as per protocol described by the Dneasy Blood and Tissue kit user manual.
For the identification of HPV DNA in samples of cervical tumors, it was PCR Nested amplification technique was used, according to Vidal et al (2016).
The determination of HPV genotypes was performed by automated sequencing of the PCR product using the MegaBACE 1000 sequencer (GE Healthcare, UK). At reactions were carried out at the Molecular Biology Laboratory of the State University of Maranhão located at the Center for Higher Studies in Caxias (CESC - UEMA). The sequencing was performed with the BigDye™ Terminator v3.1 Cycle Sequencing kit (Thermo Fisher Scientific), according to the manufacturer's protocol.
For the analysis and alignment of the nucleotide sequences obtained in the sequencing, the Chromas program was used, obtaining electropherograms of the HPV DNA sequences present in the samples. For confirmation and identification of type of HPV, the comparison of the nucleotide sequences of the samples was performed sequenced, submitting them to the World Nucleotide Database – Gene Bank, using the BLAST program (NCBI).
2.4 HPV variants
After identifying the types of HPV present, the samples infected by HPV16 were submitted to a new PCR amplification protocol of regions of the viral genome, capable of identifying the variant to which that type of HPV detected belongs.
Two pairs of primers were used, which amplify the entire LCR region and the E6 gene.
The PCR product was further purified and sequenced according to afore mentioned protocol. Consensus sequences were joined using the software Geneious (Biomatters Ltd.) and all generated sequences were aligned according to the specific strains for HPV 16, using reference sequences proposed by Burk et al (2013) using MEGA software (version 6.0, www.megasoftware.net). The analysis ofvariants of HPV 16 and the construction of the phylogenetic tree was carried out at the National Institute of Cancer, under the supervision of Dr. Miguel Angelo Martins Moreira.
2.6 Clinical data
The International Federation of Gynecology and Oncology (FIGO) staging system was used to classify all patients. Contrast enhanced computadorized tomography (CT) of abdomen and pelvis performed to access lymph node involvement. Pathological features as tumor size, histological type, grade of differentiation, hemoglobin level and parametrial and vaginal were recorded. We included patients treated with concurrent chemotherapy radiotherapy treatment (CCRT) for the purpose of cure.
Patients treated according to the department protocol. The external beam radiotherapy (EBRT) were performed with 4-field box procedure to whole pelvis, protecting organs at risk, being prescript 45-50.4 Gy dosis, daily fractions of 1.8 Gy, five fractions treated weekly. Additional parametrial boost until 54 Gy, protecting the midline, was realized with dose planned according to the stage. External beam irradiation executed by Cobalt-60 or 6 MV linear accelerator (Siemens). The patients given treatment with CCRT, received cisplatin, 40mg/m² for 6 cycles, weekly, performed with concurrent external radiation. Intracavitary brachytherapy was given employing the high-dose rate (HDR) after loading technique, supplied in four fractions, two times a week, with a dosis of 7-7.5 Gy per session to Point “A” according to clinical stage and tumor volume.
2.6 Local response to treatment
The assessment of local response to treatment was programmed to occur 12 weeks after radiation end, performed with gynecological clinical examination, a cervical cytology, CT in all cases (whenever necessary ultrasound or magnetic resonance imaging) and cervical biopsies in uncertain cases to access absence or presence of the tumor. They were classified ascomplete response (100% decreasing of the original tumor volume without clinical or radiologic presence of disease), partial response (decreasing of the original tumor volume by at least 50%), stable disease (reduction of less than 25% or progression up to 10% of the initial volume) and progression of disease (increase of more than 25% of the initial volume).
2.7 Ethical aspects
This study complied with all the principles set out in the Declaration of Helsinki and Resolution 466 of December 2012 of the National Health Council of Ministry of Health, guaranteeing the secrecy, reliability and dignity of the subjects of the research, as well as guaranteeing their autonomy and defense of their vulnerability.
The study project was previously approved by the Research Ethics Committee of the Federal University of Maranhão (CEP-UFMA), under Consolidated Opinion No.1.289.419/2015.
2.8 Statistical analysis
Descriptive statistical analysis was performed using the Stata program (version 14.0), data being presented in the form of figures and tables. To check association between the HPV and sociodemographic and clinical variables, the x 2 (square) test was used, with p values ≤ 0.05 were considered statistically significant.
The values referring to not knows/did not answer were excluded from the association analysis.