2.10.1. Kirby Bauer disc and well diffusion method:
The agar disc diffusion and well diffusion method were performed with 24 hour MDR broth cultures of S. aureus and E. coli using Muller Hinton agar. Different concentrations of chitosan AgNPs were used in each sterile disc and well. After incubation at 37℃ for 24 hours the diameter of the zone of clearance was measured [5].
The antifungal assay was done with antifungal assay agar. Different concentrations of chitosan AgNPs were used in each well. After incubation at 37℃ for 24 hours the diameter of the zone of clearance was measured
2.10.2. Minimal inhibitory concentration (MIC) assay:
For each bacterial culture, MIC was performed with different concentrations of chitosan AgNPs, and 0.1ml of 24 hours NB cultures of MDR S. aureus and E. coli were inoculated and incubated at 37℃ for 24 hours. The optical density was measured at 600nm in a colorimeter [18].
For the fungal culture, MIC was carried out with increasing concentrations of chitosan AgNPs and 0.1ml of 24 hours PDB cultures of Aspergillus species were inoculated and incubated at 37℃ for 24 hours. The optical density was measured at 600nm in a colorimeter
2.11 Anti-quorum sensing assays:
2.11.1 Qualitative assay- Congo red agar assay:
In this assay, the Congo red agar medium is formulated, and the 24 hour broth culture was transferred to the plates and incubated at 37°C for 24 hours [24].
2.11.2 Semi-quantitative assay – Crystal violet tube assay:
For the semi-quantitative assay, a batch of 7 test tubes was used. One tube for the untreated sample, one tube for media control and 5 tubes for the test samples were the increasing concentration of chitosan AgNPs and a standard quantity of MDR pathogens were inoculated and incubated at 37℃ for 24 hours. After the period of incubation, the contents of the tubes were aspirated, washed with PBS and dried. The 0.1% crystal violet stain is poured into the tubes to stain the biofilms. After the stipulated time the excess stain was removed and washed with Milli-Q water [24].
% biofilm inhibition= [1- (O.D of cells treated with Chitosan AgNPs/ O.D. of non-treated control)*100]
2.11.3 Swarming assay:
For this assay, LB agar was used in untreated samples and LB agar blended with the synthesized chitosan AgNPs was used for treated samples. The MDR E.coli is pocked at the center of each plate. In this experiment, Chromobacetrium violaceum MTCC2656 acts as a reporter strain. [25].
2.11.4 Pigment inhibition assay:
Overnight culture (14-18 hours) of Chromobacterium violaceum MTCC 2656 was inoculated in fresh LB broth with various concentrations of chitosan AgNPs. After the period of incubation, the cultures were centrifuged and the collected pellet is treated with 0.5 ml of DMSO to dissolve the violet pigment from the bacterial cells. The cell debris in the resulting solution was removed by centrifugation at 10,000 rpm for 10 minutes. The absorbance was read at 570nm in the colorimeter. [26].
Inhibition rate (%) = O.D 570 nm control – O.D570 nm sample/ O.D570 nm control *100%