2.1 Cell lines and animals
From American type culture collection (ATCC) (https://www.atcc.org/), we acquired human normal colorectal mucosal cell FHC, CRC cells SW480, RKO and HCT 116, as well as human colorectal adenocarcinoma epithelial cell DLD-1. Culturing FHC, RKO, HCT 116 and DLD-1 in 1640 + 10% FBS, and SW480 in L-15 + 10% FBS, the cells were then incubated in a 37℃ incubator with 5% CO2.
The four-week-old female BALB-c nude mice were provided by Cavens Biogle Model Animal Research Co., Ltd (www.cavens-biogle.cn). A cage containing five mice, with a temperature of 22–25˚C and humidity between 50–60%, was kept with a 12-h light/dark cycle. Water and food were provided in adequate amounts.
Both AAALAC (Association for Assessment and Accreditation of Laboratory Animal Care International) and the IACUC (Institutional Animal Care and Use Committee) of Chinese PLA General Hospital have given their approval to the laboratory animal facility and all animal protocols used in this study. The ethics committee of Chinese PLA General Hospital gave their approval to this research.
2.2 Collection of tissue samples
From the Seventh Medical Center of Chinese PLA General Hospital in Beijing, China, 91 CRC patients were employed to conduct a CRC tissue microarray (TMA). All the patients who provided the tissues signed informed consent. None of the patients had undergone preoperative intervention therapy or chemotherapy. Clinical data of a meticulous nature, including age, gender, tumor size, clinical grade, histological type, differentiation degree, and lymph node metastasis, was included and statistically analyzed. Using the American Joint Committee on Cancer (AJCC) staging system, surgically resected specimens were used to ascertain the stages of invasive adenocarcinoma.
2.3 Bioinformatics analysis
In this study, CSF3 mRNA levels in CRC and normal tissues were investigated based on TCGA data through GEPIA 2 website (http://gepia2.cancer-pku.cn/#analysis). The co-expressed genes of CSF3 were investigated by the co-Expedia website (https://www.coexpedia.org/search.php). The expression patterns of CSF3’s co-expressed genes were evaluated in CRC and normal samples from TCGA database. Analysis of all DEGs obtained was conducted using the Kyoto Encyclopedia of Genes and Genomes (KEGG), utilizing the R. package cluster Profiler v3.16.0.
2.4 Immunohistochemical staining (IHC)
IHC staining was used to quantify the expression of antibodies in the lesion sites. The slides were deparaffinized with xylene 3 times. Then, the slides were subjected to antigen repair using EDTA solution and block using 3% H2O2. After that, primary and secondary antibodies were added, subsequent DAB and Hematoxylin were applied to visualize the expression patterns of antibodies in the healthy and lesion sites. IHC experimental scores were classified into negative (0), positive (1–4), ++ positive (5–8), or +++ positive (9–12), and high/low levels were ascertained by the median of these scores. The details of anti-bodies were listed as follows: CSF3 (1:500, abcam, #ab204989), Ki67 (1:100, abcam, #ab16667), Goat Anti-Rabbit IgG H&L (HRP) (1:400, abcam, #ab97080).
2.5 Plasmid construction and lentivirus infection
This manuscript used the RNA interference method to knock down CSF3. The RNA interference target sequence of CSF3 (GTGCTTAGAGCAAGTGAGGAA) was designed and the corresponding shRNA lentiviral vector was constructed. 1.5×105 HCT 116 and RKO cells in the logarithmic growth phase were infected at the lentivirus titer of 3×108 TU/mL under ENI.S + Polybrene, then were maintained in 1640 + 10% FBS medium. The infection efficiencies were evaluated by microscopic fluorescence.
2.6 RNA extraction and Real-time quantitative PCR (qRT-
PCR)
The total RNA of cells was extracted according to the manufacturer’s instruction of TRIzol reagent (Sigma, St. Louis, MO, USA), which was subsequently reverse-transcribed to synthesize cDNA. 10 µL qRT-PCR system was conducted with SYBR Green Mastermixs Kit (Vazyme, Nan-jing, Jiangsu, China). The relative expression of mRNA was calculated based on 2-△△Ct method. The primer sequences (5′-3′) included CSF3-forward: CAGAGCCCCATGAAGCTGAT; CSF3-reverse: GCCCTG-GATCTTCCTCACTTG; GAPDH-forward: TGACTTCAACAGCGACACCCA; GAPDH-reverse: CACCCTGTTGCTGTAGCCAAA.
2.7 Western blot assay
Lysis Buffer lysis (Cell Signal Technology, Danvers, MA) was employed to lysate the cells, and 10% SDS-PAGE was then used to segregate the total proteins. The proteins were then transferred onto PVDF membranes, which were blocked with TBST solution of 5% skim milk at room temperature for 1h before being incubated with primary and secondary antibodies. TBST was then applied to the membranes thrice, each time for 10 min. Finally, the ECL + plusTM Western blot system kit was used for color rendering, and X-ray imaging was captured. The de-tails of antibodies were listed as follows: CSF3 (1:500, abcam, #ab181053), p65 (1:2000, Proteintech, #10745-1-AP), p-p65 (1:1000, CST, #3033), GAPDH (1:30000, Proteintech, 60004-1-lg), Goat Anti-Rabbit (1:3000, Beyotime, # A0208), Goat Anti-Mouse (1:3000, Beyotime, A0216).
2.8 Proliferation
After infection, the cells were inoculated in a 96-well plate at the density of 2000 cells/well. The number of cell was counted for continuous 5 days using Celigo. Finally, the data were statistically analyzed to plot the cell proliferation curve.
2.9 Migration
Assays of wound healing and transwell were conducted to evaluate cell migration. Following infection, the cells were cultured in a 96-well plate (7×104 cells/well). Subsequently, the cells were incubated in an incubator with 5% CO2 at 37°C. A microscope was used to graph the images at the designated time, and the rate of cell migration was determined by the scratch images.
After infection, cells were prepared at a density of 4×105 cells/mL and placed in the upper chamber, which was then incubated in a serum-free medium. Subsequently, the upper chamber was transferred to the lower chamber, which was filled with a medium containing 30% FBS, and left to incubate for 72 h for transwell assay. Finally, 400 µL Giemsa was added for cell staining and the cell migration ability was quantified.
2.10 Flow cytometry
Lentivirus-infected cells were cultured in 6-well plates (2 mL/well) for 5 days. At room temperature in the dark, 10µL Annexin V-APC was added to staining for 10-15min. The cell apoptosis level was then measured using FACSCalibur (BD Biosciences, San Jose, CA, USA). As for cell cycle detection, cells were treated as previously described. Then, 1.5 mL PI solution was added, and the cell number in G1, S and G2 phase was counted.
2.11 The construction of tumor xenograft Model
1×107 RK0 cells with shCtrl or shCSF3 were subcutaneously injected into the axilla of the animal's right forelimb, each group containing 5 mice. The tumor volume was calculated at an indicated time according to the following formula: tumor volume = π/6×L×W×W, in which L and W represent tumor length and tumor width, respectively. After 34 days, the mice were sacrificed and the tumors were removed for weighing and photographing and finally frozen in liquid nitrogen and stored at -80°C.
2.12 Statistical analysis
Repeating all experiments three times, GraphPad Prism 8 (San Diego, CA, USA) and SPSS 19.0 (IBM, SPSS, Chicago, IL, USA) were utilized for data processing. Student's t-test and one-way ANOVA were then employed to evaluate the statistical significance. The data were presented as the mean ± SD. The link between CSF3 levels and clinicopathological characteristics of colorectal cancer patients was revealed via Spearman correlation analysis and Mann-Whitney U analysis. Kaplan-Meier ascertained the prognostic importance of CSF3 in CRC. P < 0.05 was considered as statistical significance, and all tests were two-tailed.