2.1 Cell lines and cell culture
Mouse leukemic monocyte/macrophage cell line (RAW264.7) and human monocytic cell line (THP-1) were obtained from the National Collection of Authenticated Cell Cultures (Shanghai, China). RAW264.7 cells were cultured in Dulbecco's modified Eagle's medium (DMEM, Gibco, Grand Island, NY, USA), with the supply of 10% fetal bovine serum (FBS, Gibco). THP-1 cells were cultured in RPMI 1640 medium (Gibco), with the supply of 10% FBS. THP-1 monocytes were first stimulated with 100 ng/ml phorbol-12-myristate-13-acetate (PMA, Sigma-Aldrich, Merck KGaA, Darmstadt, Germany) for 24 hours to differentiate into macrophages, and these cells were subsequently exposed to silica (SiO2, 12.5 µg/mm2, S5631, 1–5 µm, Sigma-Aldrich) for 36h, and the cell culture supernatant (SN) was harvested for exosome isolation. Similarly, the SN of RAW264.7 cells was collected for exosome isolation after 36 hours stimulation of SiO2 (25 µg/mm2). The untreated THP-1 cells and RAW264.7 cells using as M0 phenotype.
2.2 Exosome isolation, identification and treatment
Differential centrifugation (Optimal™ L-80 XP, Beckman Coulter, USA) was used to isolate exosomes from the BALF or the SN of the cultured cells. Exosome isolation was performed as before (37). The total protein content of exosomes was used to evaluate the quantity of exosomes, which is measured by micro-BCA assay (Sigma-Aldrich). To validate the exosomes, the expression of extracellular vesicle-related protein markers in the purified exosomes were detected by western blot analysis, including TSG101 (tumor susceptibility gene 101, 14497-1-AP, 1:1 000, Proteintech, Wuhan, China), HSP70 (heat shock protein 70, ab2787, 1:1 000, Abcam, Cambridge, UK) and CD63 (ab134045, 1:1000, Abcam). A transmission electron microscopy (TEM, FEI, Massachusetts, USA) was used to observe the morphology of exosomes, and nanoparticle tracking analysis (NTA, Zetasizer Nano ZS, Malvern Instruments, Worcestershire, UK) was used to analyze the size distribution range of exosomes. For cell treatment, 50 µg of exosomes was used to treat 1 × 105 Raw264.7 cells or 1 × 106 THP-1 cells. To evaluate the activation of signaling pathways, a STAT3 inhibitor (Stattic, 5 µM, Abcam, USA) and an AKT inhibitor (MK2206, 10 nM, Beyotime, Shanghai, China) were used to inhibit protein phosphorylation. Proteinase K (Sigma-Aldrich) was used to verify the location of exosomal HMGB3. The purified exosomes were diluted in 1 ml of PBS and divided evenly into 2 parts, one of which was incubated with 100 µg/ml protease K at 37°C for 10 min to digest exosome surface proteins without penetrating the membranous lipid bilayer. After termination of digestion, exosomes were extracted by centrifugation at 4°C at 110,000 × g for 2 hours.
2.3 Trafficking analysis of exosomes in vitro and vivo study
To dynamically trace exosomes, a PKH26 fluorescent kit (Sigma-Aldrich) was used to label the exosomes as described previously(37). In the in vivo study, PKH26-labeled exosomes were resuspended in 100 µl of sterile PBS and administered to C57BL/6 mice by tail intravenous injection. After 20 hours, the distribution of exosomes was detected by in vivo Xtreme II (BRUKER; Munich, Germany).
2.4 Exosome secretion inhibition assay
The neutral sphingomyelinase inhibitor (GW4869, 10 µM, Cayman Chemical, Michigan, USA) was used to block exosome secretion. Before SiO2 exposure, THP-1 cells and RAW264.7 cells were pre-treated with GW4869 for 24 hours. These cells were then treated with SiO2 + GW4869 (10 µM) for 36 hours and the SN was collected.
2.5 Western blot analysis
The primary antibodies used for western blot analysis are list below: anti-CD68 (28058-1-AP, 1:1000, Proteintech, Wuhan, China), anti-CD31 (28083-1-AP, 1:1000, Proteintech), anti-SP-B (sc-133143, 1:1000, Santa Cruz Biotechnology, Texas, USA), anti-podoplanin (PDPN, sc-53533, 1:1000, Santa Cruz Biotechnology), anti-caveolin-1 (sc-53564, 1:1000, Santa Cruz Biotechnology), anti-p-STAT1 (Tyr701) (340797, 1:1000, Zenbio, Chengdu, China), anti-p-STAT3 (AP0247, 1:1000, Bioworld, Nanjing, China), anti-p-AKT (ab81283, 1:500, Abcam, Cambridge, UK), anti-p-NF-κB p65 (310013, 1:1000, Zenbio), anti-p-ERK1/2 (AF1015, 1:1000, Affinity Biosciences, Jiangsu, China), anti-p-P38 MAPK (ab4822, 1:1000, Abcam), anti-STAT1 (ab4822, 1:1000, Proteintech), anti-STAT3 (10253-2-AP, 1:1000, Proteintech), anti-AKT (10176-2-AP, 1:1000, Proteintech), anti-NF-κB p65 (R25149, 1:1000, Zenbio), anti-ERK1/2 (BF8004, 1:1000, Affinity Biosciences), anti-P38 MAPK (R25239, 1:1000, Zenbio), anti-IL-1β (ab283818, 1:1000, Abcam), anti-HMGB1 (R22773, 1:1000, Zenbio), anti-HMGB2 (R26860, 1:1000, Zenbio), anti-HMGB3 (D160490, 1:1000, Sangon Biotech, Shanghai, China), anti-beta-actin (β-actin, 20536-1-AP, 1:1000, Proteintech), anti-Histone-H3 (17168-1-AP, 1:1000, Proteintech) and anti-glyceraldehyde3-phosphate dehydrogenase (GAPDH, 60004-1-AP, 1:1000, Proteintech). A chemiluminescent system (ChemiDocTM XRS+, BIO-RAD, USA) was used for detection.
2.6 Reverse Transcription-Polymerase Chain Reaction (RT-PCR) analysis of mRNA
The total RNA extraction, reverse transcription and RT-PCR were performed as before (37). Using β-actin or GAPDH as reference. The primer sequences are listed in table S1.
2.7 Animal model
A 28-day silicosis mouse model was constructed by one-dose intratracheal injection of silica suspension (100 mg/kg bodyweight) as described previously(37), and the BALF and lungs were harvested for further study. For administration of exosomes, exosomes (7.5 µg/g of bodyweight) were first suspended in 50 µl of PBS and administered to each animal by intratracheal injection. Then exosomes (10 µg/g of bodyweight per two days) were subsequently administered to the mice by tail intravenous injection until they were sacrificed at Day 9, and the lungs were collected for flow cytometry analysis. The same volume of PBS was administered to the control group. Exosomes for animal treatment were derived from RAW264.7 macrophages. We transfected RAW264.7 macrophages with siRNA and isolated exosomes from the cell culture supernatant, resulting in exosomes derived from siNC-transfected SiO2-exposed RAW264.7 macrophages (SiO2 + siNC-Exos) and exosomes derived from siHMGB3-transfected SiO2-exposed RAW264.7 macrophages (SiO2 + siHMGB3-Exos). The animal protocols were in accordance with the requirements of related regulations and procedures of the National Institutes of Health Guide for the Care and Use of Laboratory Animals as well as ethical principles.
2.8 Immunohistochemical staining
The anti-CD68 (28058-1-AP, 1:200, Proteintech), anti-HMGB3 (D160490, 1:100, Sangon Biotech) and anti-α-SMA (14395-1-AP, 1:200, Proteintech) antibodies were used to perform immunohistochemical staining.
2.9 Immunofluorescence
After fixation and permeabilization with 4% paraformaldehyde and 0.2% Triton X-100, the adherent cells and smears were blocked with 3% BSA-PBS, and subsequently labeled with anti-CD68 (1:100, 12-0689-42, Invitrogen, Thermo Fisher Scientific, Massachusetts, USA) and anti-iNOS (1:100, 53-5920-82, Invitrogen) antibodies at 4°C overnight. DAPI was used to stain nuclei. The fluorescence was observed with an inverted fluorescence microscope (Olympus, Tokyo, Japan).
2.10 Flow cytometry
To perform flow cytometry analysis, THP-1 cells were first stimulated with 100 ng/ml PMA for 24 hours and then cocultured with exosomes for 36 hours. RAW264.7 cells were surface stained with anti-F4/80 (0.2 µg, 12-4801-82, Invitrogen) antibodies at 4°C for 1 hour and then fixed with ice-cold methyl alcohol for 30 min. these cells were subsequently labeled with an anti-iNOS (0.125 µg, 53-5920-82, Invitrogen) antibody at 4°C for 2 hours. THP-1 cells were stained with anti-iNOS (0.25 µg, 53-5920-82, Invitrogen) and anti-CD68 (0.5 µg, 12-0689-42, Invitrogen) antibodies at 4°C for 2 hours after cell fixation and permeabilization. The cells were resuspended in 500 µl of PBS and detected by BD FACSAria™ Fusion (Becton, Dickinson and Company, USA). For lung tissue, cardiopulmonary lavage was performed with PBS containing 0.5 M EDTA to remove residual blood from the lung tissue, and the tissue was then digested with 2 mg/ml collagenase at 37°C for 30 min with mixing (125 rpm/min). After adding serum to terminate digestion, cells were filtered using a nylon strainer with an aperture of 70 µm and then centrifuged at 500 x g for 5 min. Using 40% and 80% Percoll to isolate monocytes, then cells were surface stained with CD11b (0.2 µg, 56-0112-82, Invitrogen) and F4/80 (0.2 µg, 12-4801-82, Invitrogen) at 4°C for 1 hour. After washing, an intracellular fixation and permeabilization buffer set (88-8824-00, Invitrogen) was used to fix and permeabilize cells according to the instructions. Cells were then incubated with iNOS (0.25 µg, 53-5920-82, Invitrogen) and CD206 (0.25 µg, 17-2061-80, Invitrogen) antibodies at 4°C for 2 h. After washing, 500 µl of PBS was used to resuspend the cells, and flow cytometry analysis was performed.
2.11 Enzyme-linked immunosorbent assay (ELISA)
ELISA was used to analyze the expression levels of murine IL-1β, IL-6 and TNF-α in the SN or BALF according to the instruction. These ELISA kits were obtained from proteintech.
2.12 Cell migration
THP-1 cells and RAW264.7 cells were centrifuged and resuspended in FBS-free conditioned medium. A Transwell chamber (3422, Corning Costar, USA) with an aperture size of 8 µm was utilized. In brief, 150 µl of cell suspension (1–2 x 105 cells) was added to the upper chamber, and 700 µl of conditioned medium with 10% FBS (with or without 150 µg of exosomes) was added to the lower chamber. Cystal violet staining (C0121, Beyotime, Shanghai, China) was used for observation ater 24 hours, and ImageJ software was used to analyze the results.
2.13 Plasmid construction and transfection
Murine HMGB3 cDNA were cloned into the pcDNA3.1(+) vector at the Pme I and Not I sites. A total of 1.5 µg plasmid with 3 µl of Lipofectamine 2000 (Invitrogen, Thermo Fisher Scientific, Massachusetts, USA) was mixed in 100 µl of OPTI-MEM (Gibco), and the mixture was used to transfect cells (1.5 µg of plasmid per 105 cells) for 24–36 hours.
2.14 RNA interference
Three siRNA against the mouse HMGB3 and their negative controls were constructed and generated by RiboBio (Guangzhou, China). The siRNA sequences were listed below. si-HMGB3#1, CATGCAGGGAAGAACATAA; si-HMGB3#2, GGCAGATAAAGTCCGATAT; and si-HMGB3#3, AGCAGCCTTATGTCACCAA. siRNA (100 nM) was mixed with the transfection reagent (RiboBio; Guangzhou, China), and the mixture was used to transfect cells for 24–36 hours according to the instructions. The short hairpin RNAs (shRNAs) against the human HMGB3 and their negative controls were generated by RiboBio (Guangzhou, China). The following shRNA sequences were used: shHMGB3#1: gatcccAAGGAAAGTTTGATGGTGCAActcgagTTGCACCATCAAACTTTCCTTtttttggat, shHMGB3#2: gatcccGGCTCCATCATGATCTTCGACGATActcgagCCGAGGTAGTACTAGAAGCTGCTATtttttggat, and shHMGB3#3: gatcccGCAGATAAAGTGCGCTATGATctcgagCGTCTATTTCACGCGATACTAtttttggat.
2.15 Statistics
Using GraphPad Prism software (La Jolla, CA, USA) to analyze data. All the results are expressed as the mean ± SEM. For numerical data, Student's t test (unpaired, two-tailed) was used for comparison between two groups, and two-way ANOVA followed by Tukey's multiple comparisons test was used for multiple comparisons. Statistical significance was set as P < 0.05.