Plant material, seedlings preparation and culture conditions
The plant material was taken from the collection of the Instituto de Investigaciones Agroforestales (INAF) UCTB Baracoa, Guantánamo, Cuba. The hybrid line UF 677 (International Cacao Germplasm Database [ICGD] 2021) and genotypes EICB-371, EICB-384 and EICB-385 of traditional Cuban cacao identified as Trinitario (Bidot et al. 2015) were used.
Seedlings and micrografted plants were obtained using the protocol described by Miguelez-Sierra et al. (2017) for the in vitro micrografting of T. cacao using side graft with axillary buds from young plants. The genotypes EICB-371, EICB-384 and EICB-385 were used as scions and the clone UF 677 was the rootstock. The micrograftings were maintained in a growth room at 25 ± 1 ºC, 16 h/8 h (light/darkness photoperiod), and 23 µmol m− 2 s− 1 of photosynthetic photon flux (PPF).
Microbial cultures and inocula
The bacterial inocula was obtained from 48 hours' cultures of P. chlororaphis CP07 in King B (KB) Agar. Plated on Ø 90 mm dishes with 10 mL of KB Agar, they were incubated at 28°C. After 24 hours, the plates were rinsed twice with 5 ml of sterile distilled water. Then was extracted with a sterile pipette and placed into a sterile tube. The bacterial suspension was adjusted with sterile distilled water at OD600 0.6 (108 cfu mL− 1). P. palmivora Mab 1 cultures were made on Ø 9 mm dishes, with V8 Agar 10 mL and incubated in the dark for 7 days at 24 ˚C. The inoculum consisted of a zoospore suspension prepared for mass zoospore production by 'wet-plate' method as described by Pistininzi et al. (2014). For that, mycelial plugs were scraped on the bottom of Petri dishes to promote colony growth in V8 broth, and then, the nutrients were drained and dishes washed with sterile distilled water (SDW) to create a stressing environment for sporangial production. The colonies formed at the bottom of dishes were maintained humid without free-flowing water at 22˚C for a week. After that, dishes were flooded with SDW and then placed at 28˚C to trigger zoospores release. Zoospores concentration was adjusted to 105 zoospores mL− 1. The final inoculum consisted of a 1:1 mixture of the zoospore suspension and a low-melting-point agarose solution (2% in sterile distilled water w/v) maintained at 37°C.
In planta assay under greenhouse conditions
Eight-week-old in vitro micrografted plants were used. The micrografted plants consisted of traditional Cuban cacao genotypes (EICB-371, EICB-384 and EICB-385) grafted on UF 677 rootstocks. Plants were removed from the culture vessels and planted in organic supplemented substrate (Substrat D'argile n° 9 ELEVE DCM®) in plastic pots of 2 L capacity. They were maintained for two weeks under controlled conditions for acclimatization with temperature 25 ± 1°C, relative humidity 88–92%, illumination of 119.85 µmol m− 2 s− 1 (photosynthetic photon flux) and photoperiod 16 h/8 h (light/dark). Irrigation was applied three times a week on alternate days, at a rate of 100 mL of water per plant.
After two weeks, plants were transferred to a greenhouse with temperature 25 ± 1°C, relative humidity 70% and 50% natural illumination. Plants were inoculated with 5 mL of P. chlororaphis CP07 inoculum or 5 mL of distilled water was applied to the roots. After 10 days, Mab 1 (105 zoospores-mL− 1) was inoculated on approximately two-month-old leaves. For this purpose, the zoospore suspension was inoculated on the abaxial side of two leaves per plant with a sterile brush as described by Widmer (2009), in this case a small paint brush of 0.7 cm in width was used. A total of 100 µL per leaf was inoculated. Inoculated plants were transferred to a 100% humidity chamber for seven days to promote pathogen infection. After seven days, the appearance of symptoms was evaluated on the basis of a leaf symptom scale for Phytophthora spp. infection according to Nyassé et al. (1995) modified by Acebo-Guerrero et al. (2015). The scale comprised six values: 0 = no symptoms, 1 = penetration point (very small necrotic spot), 2 = net of points (larger number of necrotic spots), 3 = reticulate patch (spider web-like), 4 = mottled necrotic patch (marbled appearance), and 5 = true necrosis (large brown lesions). Disease severity was calculated as described Yang et al. (2009): Disease severity = [∑(The number of infected leaves corresponding to the scale value x scale value)/(Total plants x highest scale value)]x 100.
Treatments consisted on plants inoculated with P. chlororaphis CP07, plants treated with sterile distilled water and infected with P. palmivora Mab 1 and plants inoculated with strain CP07 and infected with Mab1. Control treatment consisted on plants treated with sterile distilled water. Five plants per treatment were used and the experiment was repeated three times.
Determination of PAL activity in leaves and roots.
Leaf and root samples were collected on plants maintained under same conditions as the in planta assay in greenhouse which were reserved to this experiment. Plants of EICB-371 micrografts with rootstock UF 677 were used. Samples were taken on days 0, 1, 2, 3 and 4 of infection with P. palmivora Mab 1 from plants of each previously established treatment as described in the in planta assay. Seven plants from each treatment were used in the experiment. Approximately two-month-old leaves and all roots from each plant were used. PAL activity was determined also in roots to investigate the regulation of this mechanism in roots as part of the mutualistic interaction, between genotype EICB-371 and the bacterial strain, that enables the induction of the protective effect against P. palmivora. Samples were macerated independently with liquid nitrogen and kept at -80°C for preservation.
The determination of PAL activity was performed according to Olsen et al. (2008) using L-phenylalanine as substrate. Extraction was performed with 50 mg of leaf or root sample placed in a centrifuge tube with 2 mL of extraction solution (Tris-HCl, 100 mM, pH 8.8; containing 84 µL of β -mercaptoethanol (12 mM) in 100 mL of extraction solution). The tubes were kept on ice and vortexed for 1 min. Samples were centrifuged at 16000 x g, at 4°C for 10 min (Eppendorf Centrifuge 5702®, Germany). The supernatant was stored at -20 ºC until use. The protein concentration in the samples was determined by the method of Bradford (1976). The absorbance reading was performed at 595 nm in a spectrophotometer (Spectra Max M2, SPE002) using a standard curve of bovine serum albumin (BSA) with six concentrations between 0-500 mg L− 1.
For quantification of PAL activity, 500 mL of enzyme extract, 450 mL of Tris-HCl (pH 8.8) (100 mM) and 50 mL of L-phenylalanine (100 mM) were placed in an Eppendorf tube. The assay was performed in triplicate. The samples were incubated at 37°C for 1 h and the reaction was stopped by the addition of 50 mL of HCl (5 M). They were then centrifuged at 16 000 x g for 15 min (Eppendorf Centrifuge 5702®, Germany). The absorbance reading at 290 nm in spectrophotometer (Spectra Max M2, SPE002) was performed against blanks prepared in the same way as the samples, but only HCl (5 M) was added before L-phenylalanine.
The enzymatic activity was obtained from the absorbance readings and the production of cinnamic acid expressed in nmol of product formed per mg of sample per hour (nmol of cinnamic acid mg− 1 h− 1) was determined using a standard curve of cinnamic acid with concentrations of 2, 4, 6, 8 and 10 µg L− 1.
Data processing
The assays were performed in a completely randomized design. Data which did not conform to normality and homogeneity of variance were analyzed with Kruskal Wallis' ANOVA at p < 0.05. Data which conformed to normality and homogeneity of variance were analyzed with ANOVA and Tukey' Test at p < 0.05. All experiments were repeated three times. Data of one experiment representative of the three replicates were used for figures and standard error is presented as vertical bars in the figures. The program Statistica 8.0 was used for data processing.