Patient samples
Oral tumor tissues were obtained from patients diagnosed with OSCC at the Department of Oral and Maxillofacial Surgery, Kaohsiung Medical University Hospital, Kaohsiung, Taiwan, and confirmed using clinical and histological data from the Cancer Registry. Overall survival was defined as the interval between the date of diagnosis and date of death. This study was approved by the Institutional Review Board of Kaohsiung Medical University Hospital (approval no. KMUH-IRB-20130300 and KMUHIRB-F(I)-20220016). Patient informed consent was waived by the Institutional Review Board due to the retrospective nature of the study.
Cell culture
Human oral squamous cell carcinoma cell lines HSC-3, Ca9-22, and OECM-1 were obtained from the Bioresource Collection and Research Center, Hsinchu, Taiwan (https://www.bcrc.firdi.org.tw). HSC-3 and Ca9-22 cells were cultured in DMEM/F12 medium (Thermo Fisher Scientific, Waltham, MA, USA), and OECM-1 cells were cultured in RPMI 1640 medium (Thermo Fisher Scientific, Waltham, MA, USA). All cell culture media were supplemented with 10% fetal bovine serum (FBS; Biological Industries, Beit Haemek, Israel) and 1% penicillin-streptomycin-amphotericin B (Thermo Fisher Scientific, Waltham, MA, USA). Cells were maintained at 37°C in a humidified incubator with 5% CO2 incubator.
Gene knockdown and overexpression
Knockdown of IL-1RA was conducted by lentiviral infection using a pLKO.1-puro vector carrying shRNA sequences (shIL-1RA#1, 5’-GCCTTCAGAATCTGGGATGTT–3’; shIL-1RA#2, 5’-CGAGAACAGAAAGCAGGACAA-3’; shIL-1RA#3, 5’-GCAAGGACCAAATGTCAATTT-3’; shIL-1RA#4, 5’-CGTCATGGTCACCAAATTCTA-3’) that target consensus regions of human IL1RN (Accession: NM_000577), which were obtained from the National RNAi Core Facility, Academia Sinica, Taipei, Taiwan. Another pLKO.1-puro vector carrying shRNA sequences targeting firefly luciferase (shLuc, 5’-GCGGTTGCCAAGAGGTTCCAT-3’) was used as a control (National RNAi Core Facility, Academia Sinica, Taipei, Taiwan). For gene overexpression of IL-1RA, prepackaged lentiviral particles carrying pReceiver-Lv105 vector expressing full-length human IL1RN (IL-1RA-OE; Accession: NM_173841.2), or empty pReceiver-Lv105 vector (EV) as a control, were purchased from GeneCopoeia (Rockville, MD, USA). The infection was performed by adding lentiviral particles to the corresponding cells in the cell culture medium containing 8 µg/mL polybrene (Sigma-Aldrich, St. Louis, MO, USA). After infection for 48 h, 2 µg/mL puromycin was added for selection, and the surviving cells were maintained in 2 µg/mL puromycin until further experiments.
Clonogenic survival assay
OSCC cells were seeded in 6-well plates (1 × 103 cells/well; Corning, Tewksbury, MA, USA) and cultured for 14 days prior to staining with 0.5% crystal violet (Sigma-Aldrich, St. Louis, MO, USA) for 15 min at room temperature. For ionizing radiation treatment, cells were irradiated at a dose of 5 Gy using a 6-MV linear accelerator (Elekta, Stockholm, Sweden) at the Department of Radiation Oncology, Kaohsiung Medical University Hospital, Kaohsiung, Taiwan. Images were captured using a light microscope (Nikon, Tokyo, Japan) and analyzed using ImageJ software (https://imagej.nih.gov/ij).
Tumorsphere formation assay
OSCC cells were seeded in ultra-low attachment 96-well plates (5 × 102 cells/well; Corning, Tewksbury, MA, USA) in serum-free cell culture medium supplemented with 20 ng/ml epidermal growth factor (EGF; PeproTech, Rehovot, Israel), 20 ng/ml fibroblast growth factor-basic (FGF-basic; PeproTech), 10 µg/mL insulin (Sigma-Aldrich, St. Louis, MO, USA), and 1X B27 (Thermo Fisher Scientific, Waltham, MA, USA). After 14 days of cell culture, images of tumorspheres larger than 50 µm in diameter were captured using a light microscope (Nikon, Tokyo, Japan) and analyzed with ImageJ (https://imagej.nih.gov/ij).
Soft agar colony formation assay
OSCC cells were suspended in cell culture medium mixed with 0.4% low-melting agarose (Sigma-Aldrich, St. Louis, MO, USA) and then seeded in 6-cm dishes (1 × 104 cells/dish; Corning, Tewksbury, MA, USA) pre-coated with a layer of 0.5% low-melting agarose (Sigma-Aldrich, St. Louis, MO, USA). After 14 days of cell culture, colonies larger than 100 µm in diameter were stained with 0.5% crystal violet for 15 min at room temperature, and images were captured using a stereo microscope (Olympus, Tokyo, Japan) and analyzed with ImageJ (https://imagej.nih.gov/ij).
XTT cell viability assay
OSCC cells were seeded in 96-well plates (1 × 104 cells/well; Corning, Tewksbury, MA, USA) for 24 h, prior to the addition of XTT reagent from Cell Proliferation Kit II (Sigma-Aldrich, St. Louis, MO, USA) for 2 h at 37°C, followed by measurement of the optical density (OD) at 470 nm by subtracting the background at 660 nm.
Transwell cell migration and invasion assays
OSCC cells were re-suspended in serum-free cell culture medium and plated onto inserts (2 × 104 cells/insert; 8 µm pores) in 24-well transwell plates (Corning, Tewksbury, MA, USA). The inserts were pre-coated with or without Matrigel (Corning, Tewksbury, MA, USA) for cell invasion and migration assays, respectively, and normal cell culture medium was added to the bottom wells. After 24 h, cells that remained on the upper side of the inserts were removed using cotton swabs, and cells that appeared on the lower side of the inserts were fixed with 4% formaldehyde (Sigma-Aldrich, St. Louis, MO, USA) for 15 min and stained with 0.05% crystal violet (Sigma-Aldrich, St. Louis, MO, USA) for 30 min at room temperature. Images were captured using a light microscope (Nikon, Tokyo, Japan) and analyzed using ImageJ software (https://imagej.nih.gov/ij/).
Measurement of oxygen consumption rate (OCR) and extracellular acidification rate (ECAR)
The basal OCR and ECAR of OSCC cells were measured using the Extracellular Oxygen Consumption Assay and Glycolysis Assay kits (Abcam, Waltham, MA, USA), respectively, according to the manufacturer’s instructions. The fluorescent signal was measured using a CLARIOstar Plus multi-mode plate reader (BMG Labtech, Ortenberg, Germany) at 1.5 min intervals with excitation/emission wavelengths of 360/650 nm for OCR and 380/615 nm for ECAR. To measure multiple statuses of OCR in mitochondria, an Agilent Seahorse XFe24 Analyzer (Agilent Technologies, Santa Clara, CA, USA) was used in accordance with the procedures from the manufacturer and our previous report [59]. The mitochondrial modulators were obtained from Seahorse XF Cell Mito Stress Test Kit (Agilent Technologies, Santa Clara, CA, USA) and injected sequentially for specific measurements as follows: first, 1 µM oligomycin was injected to measure ATP production; second, 0.5 µM carbonyl cyanide 4-(trifluoromethoxy)phenylhydrazone (FCCP) was injected to measure maximal respiration; finally, 0.5 µM rotenone and 0.5 µM antimycin A were injected to measure spare respiratory capacity [63].
Measurement of reactive oxygen species (ROS) formation
OSCC cells were seeded in 6-well plates (3 × 105 cells/well) overnight, followed by labeling with 10 µM 2’,7’-dichlorofluorescin diacetate (DCFDA; Sigma-Aldrich, St. Louis, MO, USA) for 20 min at room temperature. The cells were then analyzed using a Cytomics FC 500 Flow Cytometer (Beckman Coulter, Indianapolis, IN, USA) in accordance with the manufacturer’s instructions and our previous report [59].
Polymerase chain reaction (PCR) array
Total RNA extracted from OSCC cells was reverse transcribed and analyzed by real-time PCR using the Human Stem Cell Signaling RT2 Profiler PCR Array (Qiagen, Redwood City, CA, USA) according to the manufacturer’s instructions and our previous report [53].
Proteome array
Total protein extracted from OSCC cells was analyzed using the Human Phospho Kinase Array (R&D Systems, Minneapolis, MN, USA), according to the manufacturer’s instructions and our previous reports [52, 54].
Western blot
Total protein extracted from OSCC cells was separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE), followed by transferred onto nitrocellulose membranes (Merck, Darmstadt, Germany). The membranes were blocked with 2% skimmed milk (Anchor, Auckland, New Zealand) and incubated with primary antibodies overnight, followed by further incubation with species-matched horseradish peroxidase-conjugated secondary antibodies (Thermo Fisher Scientific, Waltham, MA, USA) for 1 h at room temperature. Immunoreactive protein bands were detected by incubation with Immobilon Western chemiluminescent reagents (Merck, Darmstadt, Germany), and the signals were captured by ChemiDoc XRS+ (Bio-Rad, Hercules, CA, USA) and analyzed with Image Lab (Bio-Rad, Hercules, CA, USA). The following primary antibodies were used for Western blot: Goat anti-human IL-1RA (R&D Systems, Minneapolis, MN, USA), rabbit anti-human SOX2 (GeneTex, Hsinchu, Taiwan), rabbit anti-human EGF (GeneTex, Hsinchu, Taiwan), rabbit anti-human THY1 (Abcam, Waltham, MA, USA), rabbit anti-human c-KIT (Cell Signaling Technology, Danvers, MA, USA), rabbit anti-human p21 (GeneTex, Hsinchu, Taiwan), rabbit anti-human phospho-EGFR at Tyr1086 (GeneTex, Hsinchu, Taiwan), rabbit anti-human EGFR (GeneTex, Hsinchu, Taiwan), rabbit anti-human phospho-p44/42 MAPK (ERK1/2) at Thr202/Tyr204 (Cell Signaling Technology, Danvers, MA, USA), mouse anti-human ERK1/2 (GeneTex, Hsinchu, Taiwan), rabbit anti-human phospho-JNK1/2/3 at Thr183/Thr183/Thr221 (Abcam, Waltham, MA, USA), rabbit anti-human JNK1/2/3 (Abcam, Waltham, MA, USA), rabbit anti-human GAPDH (GeneTex, Hsinchu, Taiwan), and mouse anti-human β-actin (Sigma-Aldrich, St. Louis, MO, USA).
Immunohistochemistry (IHC)
Formalin-fixed and paraffin-embedded normal and tumor tissue sections were immunostained using a Bond-Max automated IHC stainer (Leica Microsystems, Wetzlar, Germany) in accordance with the manufacturer’s instructions and our previous reports [53, 60]. The following primary antibodies were used for IHC: goat anti-human IL-1RA (R&D Systems, Minneapolis, MN, USA), rabbit anti-human SOX2 (GeneTex, Hsinchu, Taiwan), rabbit anti-human Ki67 (GeneTex, Hsinchu, Taiwan), rabbit anti-human phospho-EGFR at Tyr1086 (GeneTex, Hsinchu, Taiwan), and rabbit anti-human phospho-JNK1/2/3 at Thr183/Thr183/Thr221 (Abcam, Waltham, MA, USA). IHC images were captured using an Eclipse E600 microscope (Nikon, Tokyo, Japan), and total immunostaining scores for each tissue section were determined as the product of the percentage of positively stained cells (0, 0–4%; 1, 5–24%; 2, 25–49%; 3, 50–74%; 4, 75–100%) multiplied by the intensity of staining (0, negative; 1, weak; 2, moderate; 3, strong). To further analyze the association between IL-1RA expression and patient survival, the expression level of IL-1RA by IHC scoring was categorized into low versus high expression with cut-off values according to ROC curves [53, 60].
Animal study
Experiments involving animals were approved by and in accordance with the guidelines and regulations of the Institutional Animal Care and Use Committee of Kaohsiung Medical University, Kaohsiung, Taiwan (Approval no. 108127). Three-week-old male NOD.CB17-Prkdcscid/JNarl mice were obtained from the National Laboratory Animal Center of Taiwan (https://www.nlac.narl.org.tw). For orthotopic xenografts, OECM-1 cells expressing luciferase (OECM-1-luc; 5 × 105 cells per mouse) resuspended in 100 µL of phosphate-buffered saline were injected into mice through the intrabuccal route. At one week post-xenograft, the mice were randomly assigned to eight groups (five mice per group), including empty vector (EV) versus IL-1RA-OE from each of the untreated, metformin-treated, cisplatin-treated, and metformin combined with cisplatin-treated groups. The untreated groups were intraperitoneally injected with normal saline thrice per week. The metformin-treated group (200 mg/kg) was injected intraperitoneally three times per week. The cisplatin-treated group (2 mg/kg) was injected intraperitoneally once per week. In the metformin combined with cisplatin-treated groups, metformin (200 mg/kg) was administered three times per week and cisplatin (2 mg/kg) was administered once per week. All mice were monitored weekly using an IVIS Spectrum in vivo imaging system (PerkinElmer, Santa Clara, CA, USA), according to the manufacturer’s instructions and our previous report [53]. After treatment for 5 weeks, the mice were sacrificed, and orthotopic xenograft tumors were collected for tumor weight and volume measurements, followed by immunohistochemical analysis.
Statistical analysis
Statistical analyses were performed using JMP version 10.0.1 for Windows (SAS Institute, Cary, NC, USA). The log-rank test was used to compare patient survival using Kaplan-Meier curve analysis. The Student’s t-test was used to compare the two groups. One-way analysis of variance (ANOVA) with post-hoc Tukey’s test was used for multiple group comparisons. Pearson correlation (r) was used to evaluate the correlation between the two protein expression levels by IHC. The data are presented as the mean ± SD from three independent experiments where applicable or as otherwise specified in individual figures. P values less than 0.05 were considered statistically significant.