CHSY1 is upregulated in human OC tissues, and this phenotype is associated with a poor prognosis in patients
CHSY1 expression was assessed by IHC of a human TMA containing 154 OC tissues and 45 peritumour ovarian tissues, and representative images are shown in Fig. 1A. All samples on the TMA were classified into the CHSY1 low group or CHSY1 high group according to CHSY1 expression. According to the sign test, the proportion of OC samples with high CHSY1 expression (46.6%) was significantly higher than the proportion of peritumour samples with high CHSY1 expression (6.3%) (P < 0.001) (Table 5).
Table 5
Immunohistochemistry analysis in ovarian cancer tissues and normal ovarian tissues
CHSY1 expression | Tumor tissue | Normal tissue | p value |
Cases | Percentage | Cases | Percentage | 0.000*** |
Low | 55 | 53.4% | 18 | 94.7% |
High | 48 | 46.6% | 1 | 6.3% |
We investigated the correlation between CHSY1 expression and the clinicopathological features of OC. According to Mann‒Whitney U analysis, the expression of the CHSY1 gene was significantly different among patients grouped by pathological features such as pathological grade, T value, tumour lymph node metastasis (N value), tumour distant metastasis (M value), clinical stage and recurrence (Table 6). The same results were observed by Spearman grade correlation analysis (Table 7).
Table 6
Mann‒Whitney U analysis on CHSY1 and tumor characteristics in patients with ovarian cancer
Features | No. of patients | CHSY1 expression | p value |
low | high |
All patients | 103 | 55 | 48 | |
Age (years) | | | | 0.704 |
≤ 48 | 52 | 29 | 23 | |
༞48 | 50 | 26 | 24 | |
Grade | | | | 0.006** |
I | 8 | 5 | 3 | |
II | 13 | 11 | 2 | |
III | 61 | 24 | 37 | |
stage | | | | 0.000*** |
1 | 7 | 6 | 1 | |
2 | 23 | 19 | 4 | |
3 | 53 | 24 | 29 | |
4 | 18 | 4 | 14 | |
Tumor size | | | | 0.380 |
≤ 12.5cm | 52 | 30 | 22 | |
༞12.5cm | 51 | 25 | 26 | |
T Infiltrate | | | | 0.000*** |
T1 | 7 | 6 | 1 | |
T2 | 23 | 19 | 4 | |
T3 | 71 | 28 | 43 | |
Lymphatic metastasis(N) | | | | 0.003** |
N0 | 80 | 48 | 32 | |
N1 | 21 | 5 | 16 | |
Metastasis | | | | 0.005** |
M0 | 83 | 49 | 34 | |
M1 | 18 | 4 | 14 | |
Recurrence of state | | | | 0.001*** |
No | 21 | 18 | 3 | |
Yes | 80 | 35 | 45 | |
Table 7
Spearman grade correlation analysis between CHSY1 expression and tumor characteristics in patients with ovarian cancer
| | CHSY1 |
T Infiltrate | Spearman related | 0.399 |
| significance(double-tailed) | 0.000*** |
| N | 101 |
Lymphatic metastasis(N) | Spearman related | 0.294 |
| significance(double-tailed) | 0.003** |
| N | 101 |
Metastasis | Spearman related | 0.282 |
| significance(double-tailed) | 0.004** |
| N | 101 |
stage | Spearman related | 0.431 |
| significance(double-tailed) | 0.000*** |
| N | 101 |
Recurrence of state | Spearman related | 0.341 |
| significance(double-tailed) | 0.000*** |
| N | 101 |
Grade | Spearman related | 0.303 |
| significance(double-tailed) | 0.006** |
| N | 82 |
To determine the prognostic significance of CHSY1 in OC patients, we analysed overall survival (OS) and disease-free survival (DFS) by the Kaplan–Meier method. CHSY1 gene expression was significantly associated with the OS and DFS of OC patients, which means that the survival period was shorter in patients with high expression of the CHSY1 gene than in those with low expression (Fig. 1B).
Based on the above data, the CHSY1 gene may be related to the development and prognosis of OC and may be a drug target for OC treatment.
Knockdown of CHSY1 in OC cells in vitro by lentivirus
We first examined the background gene expression of CHSY1 in several OC cell lines by qRT‒PCR. We found that the expression of the CHSY1 gene in SK-OV-3, CAOV-3, HO-8910, and A2780 cells was relatively high compared with that in normal ovarian cells (IOSE80) (P < 0.05); it was highest in SK-OV-3 cells, whereas HO-8910 and A2780 cells showed moderate and low levels of CHSY1, respectively (Fig. 2A).
Multiple 19–21 nt target sequences were designed for RNA interference using the CHSY1 gene as a template. After evaluation and filtering with the design software, a total of 3 sequences were selected as interference targets, and lentivirus containing shRNA was transfected into SK-OV-3 cells. The qRT‒PCR results showed that the expression of CHSY1 was not significantly different between the shCtrl group and the shCHSY1-1 group. The CHSY1 knockdown efficiency was 50.8% (P < 0.05) in the shCHSY1-2 group and 57.0% (P < 0.05) in the shCHSY1-3 group. Therefore, shCHSY1-3 was used in the following experiments as shCHSY1 (Fig. 2B).
Cells infected with shCtrl or shCHSY1 lentivirus were observed via fluorescence microscopy 72 hours later. The lentiviral vector used in the experiment had fluorescent tags, and the expression of fluorescence (GFP) was observed under a fluorescence microscope. Both HO-8910 and SK-OV-3 cells showed over 80% infection efficiency and normal cell conditions. Therefore, downstream experiments were planned (Fig. 2C). To further determine CHSY1 gene knockdown efficiency after lentivirus infection, qRT‒PCR was applied; the CHSY1 knockdown efficiency in the shCHSY1 group vs. shCtrl group of HO-8910 cells was 79.30% (P < 0.05), while in SK-OV-3 cells, the CHSY1 knockdown efficiency was 55.93% (P < 0.05) (Fig. 2D). The western blotting results showed that after lentivirus infection, the protein level of CHSY1 in the shCHSY1 group was decreased compared with that in the shCtrl group, which indicated successful lentivirus-mediated knockdown.
Knockdown of CHSY1 inhibits the proliferation and migration of OC cells in vitro
To examine whether CHSY1 promotes the growth of OC cells, we observed the proliferation of cells after CHSY1 knockdown via Celigo cell counting. The HO-8910 cells in the shCHSY1 group exhibited a lower proliferation rate (P < 0.01, fold change = -3.8) than those in the shCtrl group. SK-OV-3 cells in the shCHSY1 group exhibited a lower proliferation rate than those in the shCtrl group (P < 0.001, fold change = -14.6) (Fig. 3A).
The proliferation of cells in different groups was detected with an EdU assay. The results revealed that the percentage of EdU-positive cells in the shCHSY1 group was significantly higher (P < 0.05) than that in the shCtrl group. The percentage of EdU-positive cells in the shCHSY1 group was significantly higher (P < 0.01) than that in the shCtrl group (Fig. 3B). The results showed that the number of replicating cells was reduced, which means that the cell proliferative ability was weakened when CHSY1 was knocked down.
The results of flow cytometry demonstrated that after lentivirus infection, the percentage of apoptotic HO-8910 cells was significantly increased in the shCHSY1 group compared with the shCtrl group (P < 0.001, fold change = 7.4). The percentage of apoptotic SK-OV-3 cells was significantly increased in the shCHSY1 group (P < 0.001, fold change = 3.0) (Fig. 3C).
To assess the effect of CHSY1 on the metastasis and migration ability of OC cells, wound healing and Transwell assays were performed. The wound healing assay showed that the migration rate of HO-8910 cells in the shCHSY1 group (24 h) was decreased by 65% (P < 0.001) compared with that in the shCtrl group of SK-OV-3 cells. The migration rate of cells in the shCHSY1 group (24 h) was decreased by 42% (P < 0.01) (Fig. 3D). The Transwell assay showed that compared with the shCtrl group, the migration rate of HO-8910 cells in the shCHSY1 group was decreased by 48% (P < 0.01). In SK-OV-3 cells, the migration rate of cells in the shCHSY1 group was decreased by 85% (P < 0.001) (Fig. 3E). The above results indicated that knockdown of CHSY1 significantly reduced the migration ability of OC cells.
Collectively, the results proved that the knockdown of CHSY1 could inhibit the proliferation and migration of the HO-8910 and SK-OV-3 OC cell lines.
Total RNA quality inspection of the chip samples
The results of quality inspection of chips are shown in Fig. 4A ~ D.
Knockdown of CHSY1 caused the aberrant expression of related genes
The above results showed that CHSY1 is highly expressed in OC and is associated with prognosis, but the mechanism and related pathways are not clear. Therefore, we used transcriptome sequencing to identify differentially expressed genes between the CHSY1 knockdown and control groups. HO8910 cells were grouped into the NC (shCtrl group) and KD (shCHSY1 group) groups. We calculated the significance of the difference between groups based on the P value using a linear model [10] based on the empirical Bayesian distribution and used the Benjamini‒Hochberg method to correct the false discovery rate (FDR). The screening criteria for significantly differentially expressed genes were |fold change| ≥1.3 and FDR < 0.05.
Seventy-three genes were upregulated and 219 genes were downregulated in the KD group compared with the NC group. A volcano plot was drawn to reveal the differentially expressed genes between the two groups based on the fold change and significance level (Fig. 4E). Hierarchical clustering analysis was carried out. The clustering results revealed subsets of genes with different expression patterns from the target gene sets; genes with similar expression patterns may have similar functions, participate in the same biological pathways, or be in adjacent regulatory positions in the pathway(Fig. 4F).
Using the above methods, we identified the main genes that were differentially expressed after CHSY1 knockdown and identified them by q-PCR (primers of all differentially expressed genes are shown in Table 3). According to qPCR in HO-8910 cells, the MZT1 and OLR1 genes were upregulated (P < 0.05), while the TIAM1, COMT, RAD23B, DUSP3, CALU, KIAA1191, C4orf32, ARPC1A, CFL2, and ITGA2 genes were downregulated (P < 0.05), and significant differences were observed in the expression of the PPP1CB, PTCH1 and LAMC1 genes (Fig. 4G). Among these differentially expressed genes, T-lymphoma invasion and metastasis-inducing protein-1 (TIAM1) was the most downregulated when CHSY1 was knocked down. Based on the previous literature, we found that TIAM1 promoted tumour metastasis and drug resistance in some malignancies, including OC, so it is likely to act as a downstream gene of CHSY1, so it was used in the following research.
Knockdown or overexpression of CHSY1 causes the synchronous expression of TIAM1
To verify whether TIAM1 may be a downstream gene of CHSY1, qPCR and western blotting were applied to assess TIAM1 expression in HO8910 and SK-OV-3 cells when CHSY1 was knocked down or overexpressed. According to qPCR, the CHSY1 and TIAM1 genes were downregulated in the shCHSY1 group in HO-8910 and SK-OV-3 cells compared with the shCtrl group (P < 0.05). The CHSY1 and TIAM1 genes were upregulated in the CHSY1 group in HO-8910 and SK-OV-3 cells relative to the shCtrl group (P < 0.05). The same results were observed by western blotting: both CHSY1 and TIAM1 protein expression levels were decreased in the shCHSY1 group in the two cell lines. Both CHSY1 and TIAM1 protein expression levels were increased in the CHSY1-overexpressing group (Fig. 4H,I).
CHSY1 affects the proliferation and metastatic ability of OC cells through TIAM1
Through the above experiments, we confirmed that CHSY1 can directly affect the expression of TIAM1, but whether CHSY1 regulates cell functions via TIAM1 was verified by the next steps. We first constructed a lentiviral vector containing the shTIAM1 plasmid and confirmed that shTIAM1-1 was highly effective for TIAM1 knockdown by qPCR (P < 0.05) (Fig. 5A). Therefore, shTIAM1-1 was used in the following experiments.
The control and targeted lentivirus-infected cells were grouped as shown in Table 4 and observed for 72 hours under a microscope, which showed that the cell infection efficiency reached more than 80% and that the cell state was normal (Fig. 5B).
Then, the proliferation and migration abilities of the cells were assessed to determine the role of CHSY1 and TIAM1 in OC cell function. In both HO-8910 and SK-OV-3 cells, the CHSY1 + NC-shTIAM1 group had significantly increased cell proliferation (P < 0.05) compared with the NC (OE + KD) group, while it was significantly enhanced in the shTIAM1 + NC-CHSY1 group (P < 0.05). The cell proliferation rate in the CHSY1 + shTIAM1 group was significantly reduced (P < 0.05) compared with that in the CHSY1 + NC-shTIAM1 group and was significantly increased compared with that in the shTIAM1 + NC-CHSY1 group (Fig. 5C).
The migration ability of HO-8910 and SK-OV-3 cells was assessed via Transwell assay, which showed that the Transwell migration rate was significantly higher in the CHSY1 + NC-shTIAM1 group than in the NC (OE + KD) group (P < 0.001), while it was significantly reduced in the shTIAM1 + NC-CHSY1 group compared with the NC (OE + KD) group (P < 0.001). After lentiviral infection, the Transwell migration rate in the CHSY1 + shTIAM1 group was lower than that in the CHSY1 + NC-shTIAM1 group but higher than that in the shTIAM1 + NC-CHSY1 group (P < 0.001) (Fig. 5D).
The above experiments indicated that CHSY1 affects TIAM1 gene and protein expression, that TIAM1 is a downstream gene of CHSY1, and that CHSY1 affects the proliferation and metastatic ability of OC cells through TIAM1 in vitro.
CHSY1 affects the proliferation and metastasis of OC cells via the ERK signalling pathway
By analysing the sequencing results via Ingenuity Pathway Analysis (IPA), the interaction network of the target gene and CHSY1 was constructed. The network involving classical pathway genes is shown in Fig. 6. Some pathways were found to be aberrantly expressed in the shCHSY1 group, and we selected several of the signalling pathways related to OC, including the MAPK/ERK signalling pathway, based on a literature search. Proteins related to the signalling pathway were assessed by western blotting in SK-OV-3 cells transfected with lentiviral shRNA. mTOR, p-mTOR, and p-ERK protein levels were decreased, while ERK, P38, P53, TNF-α, and β-catenin levels were not significantly different in the shCHSY1 group compared with the shCtrl group (Fig. 7A). To verify the role of the ERK pathway in CHSY1, an ERK inhibitor was added to HO-8910 cells infected with lentivirus facilitating CHSY1 overexpression. Western blot assays showed that CHSY1 and p-ERK were upregulated in the overexpression group compared with the control group, but there was no significant change in ERK protein expression. CHSY1 and p-ERK were downregulated in the ERK inhibitor group compared with the CHSY1 group (P < 0.001) and upregulated in the CHSY1 + ERK inhibitor group (P < 0.001), while no difference was noticed in ERK protein. The above results indicate that ERK signalling is a pathway affecting the action of CHSY1. The same result was observed in SK-OV-3 cells (Fig. 7B).
Cell Counting Kit-8 (CCK-8) assays were used to examine the proliferation of HO8910 cells with lentivirus-mediated CHSY1 overexpression and ERK inhibitor treatment. Cells transfected with only CHSY1 lentivirus had the strongest proliferative capacity. Proliferation decreased after the ERK inhibitor was added, while cells treated with only ERK inhibitors had the weakest proliferative capacity, even lower than that of the control group (P < 0.001). The same results were observed in SK-OV-3 cells, which means that the effect of CHSY1 on cell proliferation was ERK-dependent (Fig. 7C).
The results of HO8910 cell apoptosis detection by flow cytometry showed that the apoptosis level was decreased in the CHSY1 overexpression group compared with the control group, and it was increased significantly after the addition of ERK inhibitor (P < 0.001). The same result was observed in SK-OV-3 cells (Fig. 7D). Thus, the inhibitory effect of CHSY1 on apoptosis is achieved through the ERK pathway.
CHSY1 promotes the growth of OC via TIAM1 in vivo
We next investigated the function of CHSY1 and TIAM1 in OC tumorigenesis in vivo. Tumour size and tumour weight (Fig. 8A ~ B) indicated that CHSY1 is indispensable for in vivo tumorigenesis, and CHSY1-mediated tumour growth was inhibited after TIAM1 was knocked down. Therefore, TIAM1 is a downstream gene of CHSY1 and is a key factor in its tumour-promoting role in vivo. Histological analysis confirmed that xenograft tumours showed a high positive Ki67 staining rate, which means that the cells are highly proliferative. The Ki67 protein level was reduced after TIAM1 was knocked down (Fig. 8C). Collectively, these results suggest that CHSY1 promotes cancer growth in vivo and that this effect is achieved through the downstream gene TIAM1.