N-ADSC and T2DM-ADSC exhibited similar circadian rhythms of the clock genes in terms of phase and amplitude after transplantation
The results of next-generation sequencing revealed that the N-ADSC transplants exhibited daily fluctuations in the clock genes PER1, PER2, PER3, CRY1, CRY2, and aryl hydrocarbon receptor nuclear translocator like (ARNTL) (basic helix-loop-helix ARNT like 1 [BMAL1]). In contrast, daily fluctuations were not noted in the clock genes CLOCK1, CLOCK2, CLOCK3, and CLOCK4 (Fig. 1a,b). Similarly, the T2DM-ADSC-transplants showed daily fluctuations in PER1, PER2, PER3, CRY1, CRY2, and ARNTL (BMAL1), whereas such fluctuations were not observed in CLOCK1, CLOCK2, CLOCK3, and CLOCK4 (Fig. 1c). In the Z-score display of next-generation sequencing, daily fluctuations were noted in PER1, PER2, PER3, CRY1, CRY2, and ARNTL (BMAL1) in both the N-ADSC (Fig. 1c) and T2DM-ADSC transplants (Fig. 1d). Next, quantitative PCR was performed to analyze daily fluctuations in the clock genes PER2, CLOCK1, CRY1, and ARNTL (BMAL1) (Fig. 1e–h). The clock genes PER2, CLOCK1, CRY1, and ARNTL (BMAL1) exhibited similar daily fluctuations in terms of phase and amplitude in both transplants (Fig. 1e-h). Significant differences in expression were observed only in CLOCK1 at ZT10 and CRY1 at ZT6. At ZT6, the expression of CRY1 was significantly increased in the T2DM-ADSC transplant compared with the N-ADSC transplant (Fig. 1g). At ZT10, the expression of CLOCK1 was significantly decreased in the T2DM-ADSC transplant compared with the N-ADSC transplant (Fig. 1f).
The expression of mitochondrially encoded ATP synthase 8 pseudogene 1 ( MTATP8P1 ) and NADH:ubiquinone oxidoreductase subunit A7_2 ( NDUFA7_2 ) varied between the light and dark periods
Between the N-ADSC and T2DM-ADSC transplants, next-generation sequencing detected great variations in the following categories related to tissue regeneration: cell morphology; embryonic development; hair and skin development and function; organ development; organismal development; and tissue development (Table 1). Based on next-generation sequencing, the genes that exhibited variation in the expression between the N-ADSC and T2DM-ADSC transplants were categorized (Fig. 2a). Genes with considerably decreased expression in the T2DM-ADSC transplant were extracted as 17 candidate genes (Fig. 1b). The results were performed for these 17 genes to analyze their expression levels at two time points (ZT6 and ZT18 in the light and dark period, respectively). In the N-ADSC transplant, two genes (MTATP8P1 and NDUFA7_2) showed significantly lower expression levels at ZT18 (dark period) versus ZT6 (light period). In contrast, significant variations were not recorded in the T2DM transplant (Fig. 2c, q). The remaining 15 genes did not show any significant variations in the expression between the two aforementioned time points (Fig. 2d–p, r, s). The MTATP8P1 and NDUFA7_2 genes that showed variations between the two time points were related to mitochondria. Thereafter, we focused on the daily fluctuations in mitochondrial genes.
Between N-ADSC and T2DM-ADSCs transplants, daily fluctuations in mitochondrial genes showed variations in phase
Fifteen highly expressed mitochondrial genes were identified, namely mitochondrially encoded ATP synthase membrane subunit 6 (MT-ATP6), MT-ATP8, mitochondrially encoded cytochrome c oxidase I (MT-CO1), MT-CO2, MT-CO3, mitochondrially encoded cytochrome b (MT-CYB), MT-ND1, MT-ND2, MT-ND3, MT-ND4, MT-ND4L, MT-ND5, MT-ND6, mitochondrially encoded 12S rRNA (MT-RNR1), and mitochondrially encoded 16S rRNA (MT-RNR2) (Fig. 3). In the N-ADSC transplant, the mitochondrial genes MT-ATP6, MT-ATP8, MT-CO2, MT-ND1, MT-ND3, and MT-ND4L showed daily fluctuations, reaching their lowest levels at ZT10 and ZT22 (Fig. 3a, b). Moreover, daily fluctuations in the mitochondrial genes MT-ATP6, MT-ATP8, MT-CO2, MT-ND1, MT-ND3, MT-ND4L, and MT-ND5 differed in phase between the T2DM-ADSC and N-ADSC transplants, reaching their lowest levels at ZT18. These results revealed that daily fluctuations in the mitochondrial genes differed in the phase between the N-ADSC and T2DM-ADSC transplants (Fig. 3c, d).
Daily fluctuations in mitochondrial function differed in phase and amplitude between the N-ADSC and T2DM-ADSC transplants
We explored the characteristics through which T2DM affected the daily fluctuations in mitochondrial function. Electron microscopic images of the mitochondrial structure showed that the crista structure was regularly aligned in the N-ADSC group. In contrast, the crista structure was destroyed in the T2DM-ADSC group, with fewer cristae being present (Fig. 4a). Therefore, we decided to analyze the daily fluctuations in the number of mtDNA copies. The N-ADSC group exhibited daily fluctuations in the number of mtDNA copies, reaching the lowest number at ZT10. In contrast, daily fluctuations were not observed in the T2DM-ADSC transplant (Fig. 4b). Difference in the mitochondrial membrane potential is critical for maintaining the production of mitochondrial ATP by the respiratory chain. Previous reports suggested that the mitochondrial membrane potential disappears after opening the mitochondrial permeability transition pore. This is followed by a flow of cytochrome C into the cytoplasm. In this study, a low molecular fluorescent dye JC-1 was used to observe the mitochondrial membrane potential. Differences in mitochondrial membrane potential prompt the accumulation of JC-1 in mitochondria. In addition, it alters the fluorescence properties from green fluorescence (wavelength: 530 nm) to red fluorescence (wavelength: 590 nm) due to the accumulation of the dye. Thereafter, the ratio of red fluorescence intensity to green fluorescence intensity was evaluated. The fluorescence intensity ratio of JC-1 mitochondrial accumulation, which reflects mitochondrial membrane potential difference, showed daily fluctuations in the N-ADSC transplant, peaking at ZT10. However, the T2DM-ADSC transplant did not exhibit daily fluctuations (Fig. 4c). Mitophagy is a system that selectively eliminates mitochondria that are degraded due to oxidative stress and DNA damage. In mitophagy, degraded mitochondria are isolated by autophagosomes and fused with lysosomes, where they are finally digested. In this study, we used the fluorescence intensity of Mtphagy Dye (which visualizes mitophagy) to evaluate daily fluctuations in mitophagy. In the N-ADSC transplant, the fluorescence intensity of the mitophagy-visualizing dye showed daily fluctuations, peaking at ZT10. In contrast, no daily fluctuations were observed in the T2DM-ADSC transplant (Fig. 4d). Moreover, signals regulating the daily fluctuations in mitochondrial genes and functions were examined by pathway analysis based on the results of next-generation sequencing. NF-kB was identified as a factor that plays a central role in the extracted signaling pathway (Fig. 5a). When daily fluctuations were evaluated using the NF-kB reporter assay, the results showed daily fluctuations in NF-kB reporter activity in the N-ADSC transplant, peaking at ZT10. Nevertheless, no daily fluctuations were observed in the T2DM-ADSC transplant (Fig. 5b).