Cell incubation was conducted in a 12-well plate with a density of 500,000 cells per well for 4 hours using 500 µl of DMEM with 10% FCS. Subsequently, the medium was changed to 500 µl of DMEM without FCS, and the MCF7 cells were further incubated for 12 hours. For the preparation of MTE solution, 27.1 mg of MTE was dissolved in 100 µl of pure ethanol, and then diluted at a ratio of 1:1000 with DMEM without FCS. The solution for the control group was prepared in the same manner without adding MTE.
To obtain different concentrations (5 µg/ml and 10 µg/ml), various amounts of MTE solution and DMEM without FCS were added, totaling 500 µl per well. In the control group, the control solution and DMEM without FCS were added to each well instead of the MTE solution. This was followed by a 2-hour incubation period. Since changes in mRNA levels can occur within hours after stimulation, and the half-life of mRNA is also in the range of hours, a 2-hour incubation time was chosen. After incubation, excess liquid was removed, and the wells were rinsed with phosphate buffered saline (PBS). RA-1 buffer (Macherey-Nagel, Düren, Germany) was added to lyse the cells.
RNA isolation was performed using NucleoSpinRNAII (Macherey-Nagel, Düren, Germany), and reverse transcription of the RNA was carried out using the High-Capacity cDNA Reverse Transcription Kit (Thermo Fisher Scientific, Waltham, MA, USA) with 10 ng of RNA. The temperature protocol included phases of 10 minutes at 25°C, 2 hours at 37°C, 5 seconds at 85°C, followed by cooling to 4°C.
For the PCR assay, each well was prepared with 10 µl of TaqMan® Universal PCR Master Mix 2X (Thermo Fisher Scientific), 8 µl of distilled water (treated with 0.1% diethyl pyrocarbonate), 1 µl of TaqMan® Gene Expression Assay 20X (Thermo Fisher Scientific; Target: ACTB, Assay ID Hs999903_m1; Target: ESR2, Assay ID Hs01100357_m1; primer sequences not provided by the manufacturer), and 1 µl of cDNA sample. The PCR assay was performed using the ABI Prism 7500 Fast (Thermo Fisher Scientific).
Thermal cycling for the PCR assay was conducted as follows: The reaction started with an initial denaturation step at 95°C for 20 seconds, followed by 40 cycles of amplification at 95°C for 3 seconds, and then 60°C for 30 seconds. The results were analyzed using the comparative 2-ΔΔCT method [14], with β-Actin serving as the endogenous control for the calculation of ΔCT values. Three measurements were performed in total, each with two technical replications.
For RNA isolation, NucleoSpinRNAII kit (Macherey-Nagel, Düren, Germany) was used, and reverse transcription of the RNA was carried out using the High-Capacity cDNA Reverse Transcription Kit (Thermo Fisher Scientific, Waltham, MA, USA) with 10 ng of RNA. The temperature protocol included phases of 10 minutes at 25°C, 2 hours at 37°C, 5 seconds at 85°C, followed by cooling to 4°C.