Human materials
FFPE kidney tissues of patients with or without renal disease, which were obtained by autopsy, were used. Renal diseases include MPA (n=4), IgA nephropathy (IgAN; n=2), and hypertensive arteriosclerosis (n=3). Kidney tissues of a patient who died of Ewing’s sarcoma but did not manifest renal involvement were used as normal kidney tissues, as there was no pathological finding. All patients were negative for anti-GBM antibody. Peripheral blood (10 ml) was obtained from a healthy volunteer after acquisition of written informed consent.
Rats
Wistar-Kyoto (WKY) rats (3 weeks old, male) were purchased from Sankyo Laboratory (Sapporo, Japan) and maintained under specific pathogen-free condition.
Reagents
Col (IV) derived from human placenta that includes α3(IV)NC1, proteases derived from Streptomyces griseus (S. griseus), pertussis toxin, and phorbol myristate acetate (PMA) were purchased from Sigma-Aldrich (St. Louis, MO, USA). Neutrophil elastase (NE) was purchased from Abcam (Cambridge, UK). Recombinant human α3(IV)NC1 and MPO light chain were purchased from Cloud-Clone (Katy, TX, USA). Human native MPO was purchased from RayBiotech (Peachtree Corners, GA, USA) and Elastin Products Company (Owensville, MO, USA).
Antibodies
Antibodies used as anti-human primary antibodies include rat anti-α3(IV)NC1 mAb (clone H31, IgG2a; Chondrex, Redmond, WA, USA), rabbit anti-α3(IV)NC1 polyclonal antibody (pAb; Cloud-Clone), mouse anti-tumstatin, α3(IV)NC1 mAb (clone MAB7546, IgG1; Bio-Techne, Minneapolis, MN, USA), rabbit anti-CD11c pAb (Thermo Fisher Scientific, Rockford, IL, USA), and mouse anti-CD68 mAb (clone KP1, IgG1; Abcam). Antibodies used as secondary antibodies include horseradish peroxidase (HRP)-conjugated goat anti-rat IgG1 (Bethyl Laboratories, Montgomery, TX, USA), IgG2a (Bio-Rad Laboratories, Hercules, CA, USA), and IgG2b (Bio-Rad Laboratories) antibodies, HRP-conjugated goat anti-rat IgG antibody (Bethyl Laboratories), HRP-conjugated goat anti-rabbit IgG antibody (Jackson ImmunoResearch, West Grove, PA, USA), HRP-conjugated goat anti-mouse IgG antibody (SeraCare Life Sciences, Milford, MA, USA), fluorescein isothiocyanate (FITC)-conjugated rabbit anti-rat IgG antibody (Dako, Glostrup, Denmark), Alexa Fluor 594-conjugated goat anti-rabbit IgG antibody (Abcam), and Alexa Fluor 488-conjugated goat anti-mouse IgG antibody (Abcam).
Antigen retrieval from FFPE normal kidney sections
FFPE normal kidney sections were cut into 4 µm sections, mounted on silane-coated glass slides, deparaffinized with xylene, and then autoclaved at 121℃ under acidic condition (0.2 M HCl, pH 0.9, 6 min), neutral condition (citrate buffer, pH 6.0, 10 min), or alkaline condition (Tris-EDTA, pH 9.0, 20 min). Sections that did not undergo heating were used as controls. In other experiments, FFPE normal kidney sections were deparaffinized with xylene, heated under neutral condition, and then exposed to proteases derived from S. griseus (0.5 mg/ml) for 30 min at 37℃. After rinsing in running tap water for 5 min, the sections were subjected to IHC for α3(IV)NC1.
IHC for α3(IV)NC1 using FFPE normal kidney sections
After antigen retrieval, the sections were exposed to 3% hydrogen peroxide (H2O2)-methanol to inactivate endogenous peroxidase in the tissues followed by blocking the non-specific binding of antibodies and then allowed to react with rat anti-α3(IV)NC1 mAb (1:1000) for 1 h at room temperature (RT). After rinsing with phosphate-buffered saline (PBS), the sections were next made to react with the HRP-conjugated goat anti-rat IgG2a antibody (1:1000) for 1 h at RT. After rinsing with PBS, the HRP activity on tissue sections was detected by 3,3¢-diaminobenzidine (DAB) substrates followed by counterstaining with Mayer’s hematoxylin dye.
Digestion of Col (IV) by proteases
Col (IV) (1 mg/ml) was mixed with an equal volume of proteases derived from S. griseus at final concentrations of 0, 1.25, 12.5, 125, and 1250 µg/ml or NE at final concentrations of 0, 125, 250, 500, 1000, and 2000 µU/ml for 30 min at 37℃. Thereafter, the solution was heated for 15 min at 80℃ to inactivate the enzymes. Samples were subjected to enzyme-linked immunosorbent assay (ELISA) to detect α3(IV)NC1.
Detection of α3(IV)NC1 by ELISA
Wells of 96-well plates (Thermo Fisher Scientific) were coated with 5 µg/ml rat anti-α3(IV)NC1 mAb (50 µl/well) overnight at 4℃ and then washed four times with PBS containing 0.05% Tween 20 (PBS-T) and soaked in PBS-T containing 1% skim milk (150 µl/well) for 1 h at RT to block the non-specific binding of antibodies. After the removal of the blocking solution from the wells, positive control [PC; 1.25 µg/ml recombinant human α3(IV)NC1] or sample solution (50 µl/well) was added into the wells and then incubated for 1 h at RT. After washing with PBS-T, the wells were next incubated with 1 µg/ml rabbit anti-α3(IV)NC1 pAb (50 µl/well) for 1 h at RT. After washing with PBS-T, the wells were further incubated with 1:20,000 HRP-conjugated goat anti-rabbit IgG antibody (50 µl/well) for 1 h at RT. After washing with PBS-T, 3,3¢,5,5¢-tetramethylbenzidine (TMB) was added into the wells. After 30 min incubation at RT, 1 M H2SO4 was added to stop the reaction. Absorbance at 450 nm was measured using Multiskan FC (Thermo Fisher Scientific). The optical density of the PC was set as 100, and the relative values of samples (% reactivity) were calculated.
Detection of α3(IV)NC1 and macrophages in FFPE kidney sections of patients with renal disease by IHC
FFPE kidney sections of patients with renal disease were autoclaved for 20 min at 121℃ in Tris-EDTA (pH 9.0) to retrieve the antigens. Thereafter, the sections were exposed to 3% H2O2-methanol to inactivate endogenous peroxidase in the tissues followed by blocking the non-specific binding of antibodies and then allowed to react with rat anti-α3(IV)NC1 mAb (1:1000) for 1 h at RT. As a control, isotype rat IgG2a (MBL, Nagoya, Japan) was used. After rinsing with PBS, the sections were next made to react with the HRP-conjugated goat anti-rat IgG2a antibody (1:1000) for 1 h at RT. After rinsing with PBS, the HRP activity on tissue sections was detected by DAB substrates followed by counterstaining with Mayer’s hematoxylin dye.
In other experiments, the sections stained for α3(IV)NC1 were further allowed to react with rabbit anti-CD11c pAb (1:500) for 1 h at RT before counterstaining. After rinsing with PBS, the sections were next made to react with alkaline phosphatase (AP)-polymer reagents (Dako) for 1 h at RT. After rinsing with PBS, the AP activity on tissue sections was detected by fuchsin chromogen followed by counterstaining with Mayer’s hematoxylin dye.
Alternatively, FFPE kidney sections of patients with renal disease were autoclaved for 20 min at 121℃ in citrate buffer (pH 6.0) to retrieve the antigens. Thereafter, the sections were exposed to 3% H2O2-methanol to inactivate endogenous peroxidase in the tissues followed by blocking the non-specific binding of antibodies and then allowed to react with mouse anti-CD68 mAb (1:50) for 1 h at RT. After rinsing with PBS, the sections were next made to react with the HRP-conjugated goat anti-mouse IgG antibody (1:100) for 1 h at RT. After rinsing with PBS, the HRP activity on tissue sections was detected by DAB substrates followed by counterstaining with Mayer’s hematoxylin dye.
Detection of α3(IV)NC1 and macrophages in FFPE kidney sections of patients with renal disease by immunofluorescence staining
FFPE kidney sections of patients were autoclaved for 20 min at 121℃ in Tris-EDTA (pH 9) to retrieve the antigens. Thereafter, the sections were subjected to blocking of the non-specific antibody binding and then allowed to react with rabbit anti-CD11c pAb (1:500) overnight at 4℃. After rinsing with PBS, the sections were subsequently made to react with Alexa Fluor 594-conjugated goat anti-rabbit IgG antibody (1:1000) for 1 h at RT. The sections were next allowed to react with mouse anti-CD68 mAb (1:50) for 1 h at RT. After rinsing with PBS, the sections were subsequently made to react with Alexa Fluor 488-conjugated goat anti-mouse IgG antibody (1:500) for 1 h at RT followed by mounting using a solution containing 4¢,6-diamidino-2-phenylindole (DAPI; Vector Laboratories, Burlingame, CA, USA).
In other experiments, after blocking of the non-specific antibody binding, FFPE kidney sections were reacted to mouse anti-tumstatin, α3(IV)NC1 mAb (1:500), and rabbit anti-CD11c pAb (1:500) overnight at 4℃. After rinsing with PBS, the sections were next made to react with Alexa Fluor 488-conjugated goat anti-mouse IgG (1:500) and Alexa Fluor 594-conjugated goat anti-rabbit IgG (1:1000) antibodies for 1 h at RT followed by mounting using the solution containing DAPI.
Making of AAV model rats
According to Little’s protocol [13], WKY rats (4 weeks old, male) were immunized with human native MPO (1600 μg/kg) on day 0 and given an intraperitoneal injection of pertussis toxin (800 ng) on days 0 and 2 (Group 1, original protocol, n=11). Because the administration of PMA has been shown to exacerbate renal disorder in other AAV model rats [14], PMA was employed to modify the original protocol. Materially, WKY rats immunized with human MPO were further given an intraperitoneal injection of PMA (1 μg) on days 7, 14, 21, 28, and 35 (Group 2, modified protocol, n=12). For controls, rats were similarly immunized with or without recombinant human MPO light chain, which has been shown to induce non-pathogenic ANCA [15].
Urinalysis and serological and histopathological examinations of AAV model rats
All rats were euthanized on day 42 for blood and tissue sampling. Chronological blood sampling by tail cut was carried out on days 0, 14, and 28. Urine samples were collected using a metabolic cage on day 40. Hematuria was assessed at urine sampling immediately by a dipstick (Siemens Healthineers, Erlangen, Germany). The serum was separated by centrifugation. ANCA was detected quantitatively using flow cytometry (FCM). In brief, human peripheral blood neutrophils were fixed with 4% paraformaldehyde, and then the plasma membrane of neutrophils was penetrated using Permeabilization Wash Buffer (BioLegend, San Diego, CA, USA). Cells (1×106/ml) were allowed to react with 1:500 diluted rat sera for 30 min at RT. After washing with the buffer, cells were next made to react with 4 μg/ml FITC-conjugated rabbit anti-rat IgG antibody for 30 min at RT. After washing with the buffer, cells were subjected to FCM using an Attune Acoustic Focusing Cytometer (Applied Biosystems, Foster City, CA, USA). Serum C-reactive protein (CRP) levels at the time of death were determined by a commercial laboratory service (Daiichi Kishimoto Clinical Laboratory, Sapporo, Japan).
FFPE tissues of the systemic organs were cut into 4 μm sections, deparaffinized with xylene, and then subjected to hematoxylin and eosin (HE) staining. Erythrocyte casts were counted in the maximum longitudinal section of the kidney specimen.
Detection of anti-GBM antibody in rat sera
Wells of 96-well plates were coated with 2.5 µg/ml recombinant human α3(IV)NC1 that exhibits a high homology with the rat counterpart (50 µl/well) overnight at 4℃ and then washed four times with PBS-T and soaked in PBS-T containing 1% skim milk (150 µl/well) for 1 h at RT to block the non-specific antibody binding. After the removal of the blocking solution, 1:10 diluted rat sera (50 µl/well) were added into the wells and then incubated for 1 h at RT. After washing with PBS-T, the wells were next incubated with 1:10,000 diluted HRP-conjugated goat anti-rat IgG antibody (50 µl/well) for 1 h at RT. After washing with PBS-T, TMB was added into the wells. After 30 min incubation at RT, 1 M H2SO4 was added to stop the reaction. Absorbance at 450 nm was measured using Multiskan FC. To determine IgG subclass of anti-GBM antibody, 1:20,000 diluted HRP-conjugated anti-rat IgG1, IgG2a, and IgG2b antibodies were used as secondary antibodies.
IHC for rat tissues
FFPE kidney sections of normal rats were cut into 4 µm sections, mounted on silane-coated glass slides, deparaffinized with xylene, and then heated using a water bath for 20 min at 95℃ in citrate buffer (pH 6.0) or autoclaved for 6 min at 105℃ in 0.2 M HCl (pH 0.9). These sections were subjected to IHC for α3(IV)NC1. FFPE kidney sections of AAV rats were deparaffinized with xylene and then heated using a water bath for 20 min at 95℃ in citrate buffer (pH 6.0) to retrieve α3(IV)NC1 and CD11c or Tris-EDTA (pH 9.0) to retrieve CD68. Thereafter, the sections were exposed to 3% H2O2-methanol to inactivate endogenous peroxidase in the tissues followed by blocking the non-specific binding of antibodies and then allowed to react with mouse anti-tumstatin, α3(IV)NC1 mAb (1 µg/ml), rabbit anti-CD11c pAb (1:100), or mouse anti-CD68 mAb (1:50) for 1 h at RT. These anti-human antibodies have been confirmed to react with each rat counterpart. After rinsing with PBS, the sections were next made to react with the HRP-conjugated goat anti-mouse IgG antibody (1:100) or the HRP-conjugated goat anti-rabbit IgG antibody (1:500) for 1 h at RT. After rinsing with PBS, the HRP activity on tissue sections was detected by DAB substrates followed by counterstaining with Mayer’s hematoxylin dye.
Statistics
Student’s t-test and Mann-Whitney U-test were applied for comparison between parametric and non-parametric groups, respectively. p<0.05 was regarded as statistically significant.