Chemicals and solutions
MTT (3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide) and type I collagen were obtained from Thermo Fisher Scientific (Darmstadt, Germany). Technical Manual Cell Counting Kit-8 (CCK-8) was obtained from Dojindo Molecular Technologies (Rockville, MD, USA). GDCA was obtained from Cayman Chemical Company (Michigan, MI, USA). Methanol (liquid chromatography–mass spectrometry (LC–MS) grade), acetonitrile (LC–MS grade), and water (LC–MS grade) were obtained from VWR (Budapest, Hungary). Matrigel matrix was ordered from Corning (Glendale, AZ, US). All other laboratory chemicals were purchased from Sigma-Aldrich Kft. (Budapest, Hungary).
Cell lines and treatments
HTC-116, a human colon adenocarcinoma cell line, was obtained from Sigma-Aldrich Kft. (Budapest, Hungary). HTC-116 cells were cultured in Dulbecco’s Modified Eagle’s Medium (DMEM)/F-12 Ham media supplemented with 15% (v/v) fetal bovine serum (FBS), 1% (v/v) L-glutamine, and 2% (v/v) antimycotics/antibiotics (AA). Caco-2, a human colon adenocarcinoma cell line, was a kind gift from Dr. Maria A. Deli (Biological Research Center, Szeged, Hungary). Caco-2 cells were cultured in Roswell Park Memorial Institute (RPMI)-1640 media supplemented with 15% (v/v) FBS, 1% (v/v) L-glutamine, and 2% (v/v) AA. FHC, a normal colon epithelial cell line, was obtained from American Type Culture Collection (Manassas, VA, United States). FHC cells were cultured in DMEM/F-12 Ham media supplemented with 15% (v/v) FBS, 10 mM HEPES (v/v) (for a final concentration of 25 mM), 10 ng/ml cholera toxin, 0.005 mg/ml insulin, 0.005 mg/ml transferrin, 100 ng/ml hydrocortisone, and 20 ng/mL human recombinant epidermal growth factor. The cells were incubated at 37°C and gassed with a mixture of 5% CO2 and 95% air. The media were replaced every second day. Passage numbers were between 3 and 15 in each experiment.
For BA treatments, the cells were treated with seven different types of BAs (GCA, GDCA, GCDCA, TCA, TDCA, TCDCA, and DCA) in four different concentrations (100, 300, 500, and 1000 µM) for 24, 48, and 72 h. For human bile treatments, the cells were treated with gallbladder or hepatic bile. Gallbladder bile samples were obtained from the gallbladder of 6 cadavers (average age: 78.42 ± 4.7; male-to-female ratio: 3:3) in the Department of Pathology, University of Szeged. The cadavers had no known history of hepatic or biliary disease. Hepatic bile samples were obtained during routine endoscopic retrograde cholangiopancreatography procedure from patients (average age: 66 ± 5.6; male/female ratio: 2/6) who previously underwent cholecystectomy at the Department of Medicine, University of Szeged. Patients’ data are shown in Table 1. Bile samples were kept at −20°C until use. A small part of the samples was used for HPLC measurements, while the remaining bile samples were used for cell treatments for 24, 48, and 72 h in a 100× dilution. The cells were seeded in 25 cm2 tissue culture flasks or 96-well plates and grown to 70%–80% of confluence two days before BA or human bile treatments.
Ethical approval
The clinical part of the study was carried out with the approval of the Ethics Committee of the University of Szeged (No. 5016), followed by the EU Member States’ Directive 2004/23/EC on presumed consent practice for tissue collection, the guidelines of the Helsinki Declaration, and the General Data Protection Regulation (EU) 2016/679. Written informed consent was obtained from all patients for sample and data collection.
Table 1. Clinicopathological characteristics and the level of bile acids (BAs) in the gallbladder and liver.
Clinicopathological characteristics and the level of bile acids in gallbadder and liver
|
Variable
|
Gallbladder (n=6)
|
Liver (n=8)
|
n
|
(%)
|
n
|
(%)
|
Gender
|
3
3
|
(50.50)
(50.00)
|
2
6
|
(25.00)
(75.00)
|
Age
|
1
5
|
(16.66)
(83.33)
|
2
6
|
(25.00)
(75.00)
|
Cause of death
- Sepsis
- Acute left ventricular failure
- Stroke
- Tumour
|
1
3
1
1
|
(16.66)
(50.02)
(16.66)
(16.66)
|
0
0
0
3
|
(0.0)
(0.0)
(0.0)
(37.5)
|
Bile acids in human serum ( µg/mL)
|
GCA
|
8 048 ± 1996
|
(19.77)
|
929 ± 160
|
(20.37)
|
GDCA
|
7 733 ± 1790
|
(19.00)
|
799 ± 233
|
(17.51)
|
GCDCA
|
11 138 ± 4096
|
(27.37)
|
1 982 ± 736
|
(43.46)
|
TCA
|
5 144 ± 1890
|
(12.64)
|
848 ± 133
|
(18.59)
|
TDCA
|
3 303 ± 1142
|
(8.11)
|
0±0.0
|
(0.00)
|
TCDCA
|
4 877 ± 1474
|
(11.98)
|
0±0.0
|
(0.00)
|
DCA
|
34.5 ± 25.9
|
(0.09)
|
0.20 ± 0.08
|
(0.004)
|
CDCA
|
65.4 ± 41.3
|
(0.16)
|
0.65 ± 0.31
|
(0.014)
|
CA
|
354 ± 331
|
(0.88)
|
0.32 ± 0.1
|
(0.007)
|
UDCA
|
0±0.0
|
(0.00)
|
1.61
|
(0.035)
|
Total Bile Acids:
|
40 699.05
|
|
4 559.49
|
|
LC–MS measurements
The frozen samples were allowed to thaw at 4°C. Then, a dilution of 1:500 of the bile samples and a dilution of 1:200 of the liver samples were prepared in cold methanol:water 1:1. 100 µL of each sample was spiked with 10 µL methanol, containing 100 µg/mL internal standards (GCDA-D4 used for TCA, GCA, GCDA, and GDCA and DCA-D4 used for DCA, UDCA, CDCA, TDCA, and TCDCA, respectively). Samples were vortex-mixed (LSE W, Corning, NY, USA) for 1 min and then incubated for 30 min at −20°C. The incubated samples were centrifuged (Heraeus Fresco 17, Thermo Scientific, Waltham, MA, USA) at 13000 rpm for 15 min at 10°C. 5 µL of the supernatants was subjected to liquid chromatography–high-resolution mass spectrometry (LC–HRMS) analysis.
LC–HRMS measurements were performed using a Thermo Scientific Dionex Ultimate 3000 UHPLC System (Dionex) coupled to a Q Exactive Plus hybrid quadrupole-Orbitrap mass spectrometer operating with a heated electrospray interface. BAs were separated using a Purospher STAR RP-18 Hibar HR 100 × 2.1 mm, 2 µm reversed-phase columns (Merck KGaA, Darmstadt, Germany) tempered at 40°C. Solvent A was water, and solvent B was methanol:acetonitrile 1:1, and both were supplemented with 0.1% formic acid. The flow rate was 300 µL/min, and the following gradient elution was applied: 0–1 min, 5% B; 12 min, 95% B; 15 min, 95% B; 15.5 min, 5% B; 20 min, 5% B.
The ion source had the following settings: the temperature of the probe heater and ion transfer capillary, spray voltage, sheath gas flow rate, auxiliary gas flow rate, and S-lens radio frequency level were set to 350°C, 275°C, 3.5 kV, 30 arbitrary units, 20 arbitrary units, and 50 arbitrary units, respectively. The mass spectrometer acquired data using parallel reaction monitoring in negative polarity mode at 17,500 (at m/z = 200) resolution and a minimum automatic gain control target of 2.00 × 105 with a maximum injection time of 100 ms. The isolation window was 0.4 m/z. Fragmentation was performed with a normalized collision energy of 60.
Cell adhesion
96-well tissue plates were coated with 40 µg/ml type I collagen (diluted in phosphate-buffered saline (PBS)) at 4°C. After 12 h of coating, the collagen solution was removed, and the wells were air-dried and then washed with PBS. The cells were serum-starved for 8 h. Then, 100 µl cell suspension (105 cells/ml) was added to each coated well and incubated for 20 min at 37°C. The non-adherent cells were removed by washing the wells with a culture medium four times. After washing, the cells were incubated with different BAs for 24, 48, and 72 h. After treatments, 10 µl of MTT substrate was added to each well, and the cells were incubated for an additional 3 h. The MTT-treated cells were then lysed in dimethyl sulfoxide, and absorbance was measured at 560 nm using a FLUOstar OPTIMA Spectrophotometer (BMG LabTech, Ortenberg, Germany). All treatments were carried out in triplicate.
Proliferation
Cell proliferation was determined using the CCK-8 solution. Briefly, the cells (5 × 103) were seeded in a sterile 96-well plate and incubated with BAs for 24, 48, and 72 h. After treatments, the cells were incubated with 10 µl of the CCK-8 solution for 3 h. Then, absorbance was measured at 450 nm using a FLUOstar OPTIMA Spectrophotometer (BMG LabTech, Ortenberg, Germany). All treatments were carried out in triplicate.
Viability
Cell viability was measured using Lactate Dehydrogenase (LDH) Cytotoxicity Colorimetric Assay Kit according to the manufacturer’s instructions. Briefly, 100 µl cell suspension (2 × 104 cells) was seeded in a sterile 96-well tissue culture plate and incubated overnight to allow the cells to adhere. The following day, the cells were treated with 0.1% Triton X-100 or BAs. The LDH release induced by Triton X-100 was assigned to 100%. After incubation, 100 µl supernatant was carefully removed from each well and transferred into a new sterile 96-well plate. Then, 100 µl reaction mixture was added to each well and incubated for 30 min at room temperature. Absorbance was measured at 490 nm using a FLUOstar OPTIMA Spectrophotometer (BMG LabTech, Ortenberg, Germany) to determine LDH release. All treatments were carried out in triplicate. The average absorbance values of each triplicate were calculated, and the average value of the background control (200 µl assay medium) was subtracted from each sample to reduce background noise. Then, the percentage of cytotoxicity was calculated using the following formula: Cytotoxicity (%) = (exp. value − low control/high control − low control) × 100. For low control, 100 µl cell suspension plus 100 µl assay medium was added, and for high control, 100 µl cell suspension plus 100 µl Triton X-100 was added.
Migration
The cells (250,000 cells/well) were seeded in 24-well plates and allowed to adhere overnight. The following day, the confluent monolayer was gently scratched using P2 tips. Only wells containing even-sided and sharp-edged wounds were used for experiments. After washing, reagents were added to the wells. Pictures were taken before and after the 72 h BA treatment using an Olympus IX71 inverted microscope (Olympus, Budapest, Hungary). The digital images were analyzed using Image J to quantify the distance between the two edges of the wound, and the migration rate was expressed as the percentage of migration.
Clonogenic assay
The cells (1,000 cells/ well) were seeded in 6-well plates and allowed to adhere overnight. The following day, BAs were added to the wells, and the cells were incubated for 24, 48, and 72 h. After treatments, the normal culture medium was returned, and the cells were allowed to grow until day 9. Then, the media were removed, and the cells were washed with PBS, fixed with methanol–ethanol solutions (3:1 dilution), and stained with Giemsa. Pictures were taken before and after the 72 h BA treatment using an Olympus IX71 inverted microscope (Olympus, Budapest, Hungary). The digital images were analyzed using Image J.
Invasion assay
Matrigel pre-coated transwell inserts were used for invasion assays. 200 µl cell suspension (~ 2.5 × 105/ml in serum-free medium) was loaded into the upper chamber of the transwell. In contrast, the lower chamber contained 750 µl complete medium with or without BAs. Then, the cells were incubated at 37°C for 24–72 h in a humidified incubator. The cells that migrated to the bottom surface of the transwell were fixed in formaldehyde (3.7% in PBS), permeabilized with 100% methanol, and stained with Giemsa. The non-invading cells on the upper surface of the membrane were gently scraped off using a cotton swab. Cell invasion was quantified by counting the average number of invaded cells in five randomly selected microscopic fields. All treatments were carried out in triplicate.
Statistical analysis
Quantitative variables were presented as mean ± standard error of the mean. Significant differences between groups using determined by ANOVA. P ≤ 0.05 was considered statistically significant.