Patients who underwent clinical bronchoscopy at the Fuwai Yunnan Cardiovascular Hospital (Kunming, China) were recruited in this research. The pulmonary microbial community was easily affected by multi-factors, and subjects were excluded from our study if they (1) have other cardiopulmonary diseases, lung comorbidities, pulmonary infection, metabolic diseases, and other systemic diseases; (2) take any particular drugs, such as antibiotics, in the 3 months before enrollment; (3) have special diets such as feeding with breast or formula; and (4) participate in other clinical studies or were unable to provide consent for care or BALF collection. Finally, a total of 68 patients were enrolled in the current research. Bronchoalveolar lavage fluid (BALF) was collected into the sterile tube according to a standardized protocol with minimum oral contamination. Two-milliliter BALF was collected from each participant, flash-frozen in liquid nitrogen, and transferred to − 80◦C later until further processing.
The metabolomic assay required BALF samples that were thawed on ice after being taken from liquid nitrogen. Methanol and L-2-chlorobenzalanine were used to extract the metabolites. The UHPLC -Q Exactive HF-X system (Thermo) was utilized to conduct metabolomic analysis on all samples. The instrument was outfitted with an ACQUITY UPLC HSS T3 (100 mm × 2.1 mm.i.d., 1.8µm; Waters, Milford, USA), and the column temperature was kept at 40°C. The gradient elution of the Analytes was performed as previously described. Quality control samples are prepared by mixing equal volumes of all assay samples and are utilized to assess the stability of the assay system. The metabolism data that was obtained was further advanced based on previously reported findings. A principal component analysis (PCA) was conducted to analyze global similarities, which included quality control samples (QC). The student's t-test was combined with multivariate analysis. The method of orthogonal partial least-squares discriminate analysis (OPLSDA) was employed to identify differential metabolites (DMs) between groups (VIP > 1, p-value < 0.05). DMs were selected based on Fisher's exact test and clustering, and the Pearson coefficient was used to organize them. Differentially enriched KEGG (Kyoto Encyclopedia of Genes and Genomes) was performed to investigate the metabolomic pathways potentially involved in the pathogenesis of CHD-PAH. This was achieved by integrating databases of HMDB, KEGG compounds, and LIPID MAPS.
Cell culture and grouping in vitro
Life Technologies provided Dulbecco's modified eagle medium and FBS, while the HPAECs were supplied by the ATCC in Manassas, Virginia. All cells were cultured in high glucose DMEM with 10% FBS, penicillin (100 U/mL), and streptomycin (100 g/mL) in an incubator at 37°C and 5% CO2. After cells reached 80–90% confluence (ethylenediaminetetraacetic acid), they were digested with 1x trypsin + EDTA.
To experiment regulatory effects of diethyl pyridine-2,4-dicarboxylate, AMP, fumaric acid and hexamethylenetetramine on pulmonary artery endothelial cells, five groups designed including; HPAECs, HPAECs + of diethyl pyridine-2,4-dicarboxylate (0, 1, 2, 4, and 8 mg/L), HPAECs + AMP (0, 1, 2, 4, and 8 mg/L), HPAECs + fumaric acid (0, 1, 2, 4, and 8 mg/L) and HPAECs + hexamethylenetetramine (0, 1, 2, 4, and 8 mg/L).
Based on the above results, we selected AMP for an in-depth study of the signaling pathway and for validation of signaling pathways that regulate angiogenesis, new grouping designed as HPAECs, HPAECs + AMP, HPAECs + AMP + PI3K knockdown-NC, HPAECs + AMP + PI3K knockdown.
Animal grouping and in vivo
Animal studies were approved by the Thical Committee of Laboratory Animals of Fuwai Yunnan Cardiovascular Hospital. Anesthesia with sodium pentobarbital was utilized for all surgical procedures.
Fifty male SD rats (180–200 g) entered this study (5 rats in each sub-group, a total of ten groups in 2 different parts). To induce PAH, male SD rats (180–200 g) were injected with a monocrotaline (MCT, Sigma) solution, and the model was formed within 28 days. This modeling was induced for all groups except the control groups. The animal experiment consists of two different parts. First, evaluation of the association of AMP with the development of PAH. For this reason, rats were divided into five groups, including the control group (SD rats), mock surgical group, pulmonary hypertension group, Pulmonary hypertension group + AMP (6 mg/kg/d), and Pulmonary hypertension group + AMP (6 mg/kg/d) + PI3K knockdown. The second part of the animal study evaluated the relationship between injection of AMP and inducing pulmonary hypertension. In this way, we divided rats into five groups, including the Control group (SD rats), mock surgical group, SD rats + AMP (12 mg/kg/d), SD rat + AMP + PI3K knockdown NC, and SD rat + AMP + PI3K knockdown.
Cell Proliferation
To plate the transfected cells into 96-well plates, 2000 cells per well were employed. Cell counting kit-8 (CCK-8) (Dojindo, Kumamoto, Japan) solution was added to each well after 24, 48, 72, and 96 hours of culture, respectively. After 2 hours of incubation, each well's optical density (OD) was measured in the microplate reader at an absorption wavelength of 490 nm.
Real-time PCR analysis
Using an RNA Extraction Kit (QIAGEN, Netherlands), total RNA was extracted from growing cells, and target messenger RNAs were amplified using a reverse transcriptase-polymerase chain reaction. The 7500 Fast Real-Time PCR System was the equipment of choice for real-time PCR. After an initial denature at 95 degrees Celsius for twenty seconds, fifty cycles of denature at 95 degrees Celsius for five seconds and annealing/extension at 60 degrees Celsius for thirty seconds were performed. This study utilized TaqMan Gene Expression Assays from Life Technologies.
Western blot
Total protein was extracted from rat tissues using cell lysis buffer and the TissueLyser LT to homogenise the samples. Protein lysates from HPAECs were extracted using RIPA buffer. Both buffers included phosphatase and protease inhibitors. To quantify the protein content, the mixture was centrifuged at 12,000 rpm for 15 minutes at a low temperature after being immersed in an ice bath for 5 minutes. The experiment's procedures performed WB. Using SDS-PAGE, equal quantities of protein were separated and transferred to membranes, decoloured at room temperature (using TBST buffer solution) and blocked for one hour at room temperature. The membrane was exposed after adding the colour-developing solution and diluting the primary and secondary antibodies. The antibodies were diluted to corresponding concentrations of 1:200 and 1:5,000, and exposure was timed correctly. Identification was made of the protein expression of P-AKT, AKT, P-PI3K, PI3K, FOXO1, mTOR, VEGF, α-SMA, Tropomyosin, P16, P53, N-cadherin, and Vimentin. Using Image J, the grey values of protein bands were statistically assessed.
Angiogenesis assay
14 103 HPAECs were seeded in growth factor-free media containing 0.5% FBS on 40 L of growth factor-reduced Matrigel (CorningTM, # 354230) in a 96-well plate.Following 18 hours of incubation, the cells were secured in 4% formaldehyde solution in PBS and photographed utilizing an Olympus IX 70-phase contrast microscope with a Peltier CCD camera.The software known as Image J was utilized to determine the overall length of the tube.
Immunofluorescence
Before the cells were fixed in a 4% paraformaldehyde solution for 20 minutes, they were subjected to PBS washing to eliminate debris. Bovine serum albumin was utilised to block the tissue slices and cell cultures overnight at 4 degrees Celsius before applying primary antibodies(α-SMA Monoclonal Antibody,Abbkine Scientific Co., Ltd.,China). The following day, we observed an overnight stay in the dark to facilitate the incubation of the secondary fluorescent antibodies(Abbkine Scientific Co., Ltd.,China). To serve as a counterstain, all slices were stained with nuclear 4,6-diamino-2-phenylindole (DAPI; Zhongshan Jinqiao Biotechnology Co., Ltd., China). Leica manufactured the confocal laser scanning microscope for immunofluorescence imaging in Wetzlar, Germany. This allowed for the comparison and observation of various things.
Migration Assays
Five horizontal mark lines were placed at the bottom of a six-well plate before cells were added, and after they had grown to 90% confluence, cells were starved for 12 hours. A 1 ml pipette tip formed three straight scratches vertically in the middle of the well, photographed before the cells were incubated. The scratch was shot 24 hours later for comparison with the earlier pictures. ImageJ software computed The scratch area, and the cell migration ratio was calculated.
Staining with hematoxylin and eosin
Reverse gradient alcohol rehydration was used to prepare tissue samples for HE staining, followed by a 5-minute haematoxylin staining period. The tissues were differentiated with dilute hydrochloric acid, washed with running water, and then submerged in 0.6% ammonia until they turned blue. The tissues were then rinsed once more with running water. The samples were then sealed using gradient alcohol dehydration after being stained with eosin for 1–3 minutes.
Elastic fiber staining
After undergoing reverse gradient alcohol rehydration, tissue samples were immersed in Wiegert's stain for five minutes. The tissues were cleaned with Wiegert bleach for one to two minutes, separated with an acidic differentiation solution for two to three seconds, washed with running water for ten minutes, and then dyed again with Van Gieson's (VG) staining solution(Sigma-Aldrich,USA) for thirty seconds. The samples were then sealed using a gradient alcohol dehydration process.
Statistical analysis
The findings of three or more determinations were combined to represent the data as averages and standard deviations (SD). Data were examined using the GraphPad Prism program (Verse 8.0, San Diego, CA, USA). A two-tailed t-test was employed to establish statistical significance when only two groups were compared. A one-way or two-way analysis of variance was used when comparing more than two groups. Statistics were deemed significant for P values below 0.05.