Animal models
C57BL/6J mice were used for all experiments involving wild-type mice and pharmacological treatments. Mice at the age of 10-14 weeks, 31-37 weeks, 52-75 weeks and >95 weeks were chosen for young, middle-aged, old and geriatric groups, respectively. Both female and male mice of all age groups were used for initial bone marrow expansion analyses, while only female mice were used for remaining experiments. Flk1-GFP reporter mice24 were used for initial blood vessel characterization. For genetic approach labeling of hematopoietic cells, Vav1-Cre animals30 were interbred with ROSA26-mTmG reporter mice31 to generate Vav-mTmG mice. For photoconversion of hematopoietic cells, Vav1-Cre mice were interbred with ROSA26-CAG-loxP-stop-loxP-KikGR knock-in mice65 to generate Vav-KikGR mice. For pregnancy experiments, 10-week-old C57BL/6J female mice were paired with 10~12-week-old C57BL/6J male mice and the onset of pregnancy was determined by the presence of a vaginal plug in the morning. 10-week-old mice received daily intraperitoneal injections of PTH (1-34) (Bachem, 0.1 mg kg-1 for 28 days), PGE2 (Cayman Chemical, 2 mg kg-1 for 7 days), G-CSF (Peprotech, 0.2 mg kg-1 for 14 days) before sacrifice. For DC101 treatment, 10-week-old mice received intraperitoneal injections of DC101 (BioXCell, 40 mg kg-1) every 2 days for 9 weeks.
Mice were kept in individually ventilated cages (IVC), with constant access to food and water under a 12h light and 12h dark cycle regime. Air flow, temperature (21-22°C) and humidity (55-60%) were controlled by an air management system. Animals were checked daily and maintained in specific pathogen-free (SPF) conditions. Sufficient nesting material and environmental enrichment was provided. All animal experiments were performed according to the institutional guidelines and laws, approved by local animal ethical committee and were conducted at the Max Planck Institute for Molecular Biomedicine (84-02.04.2016.A160, 81-02.04.2018.A171, 81-02.04.2020.A212, 81-02.04.2020.A416 and 81-02.04.2022.A198), Universitätsmedizin Berlin (G0220/17) and the Georg-Speyer-Haus (F123/2017) under the indicated permissions granted by the Landesamt für Natur, Umwelt und Verbraucherschutz (LANUV) of North Rhine-Westphalia, the State Office for Health and Social Affairs Berlin and the Regierungspräsidium Darmstadt, Germany. Mouse lines and other unique biological materials described in this article are either available through stock centers, commercial suppliers or, upon reasonable request, the lead author.
Human subjects, CT acquisition and data analysis
The study was approved by the local ethics committee and the institutional review board (IRB) of Asan Medical Center, and the requirement for informed consent was waived due to the retrospective nature of the study (IRB number: 2023-0658). The study population consisted of 36 patients, divided into four groups according to age (between 20 and 40 years, over 60 years) and gender (male, female), with nine patients in each group. Patients who underwent CT for evaluation of small cerebral aneurysm from April to May 2023 were eligible. Patients were excluded if they had a previous history of surgery or radiation therapy to the head and neck, vascular or bone-related medical implants, or a suspicious disease other than small cerebral aneurysm.
All human patients underwent CT examinations on the same 128-channel multidetector CT system (Somatom Definition Edge; Siemens, Erlangen, Germany). Imaging variables were as follows: 100 kV; 100 effective mAs; axial scan mode; section thickness, 0.5mm; display FOV, 20.5 cm; pitch, 1; gantry rotation time, 0.5 seconds; pixel matrix, 512 ⅹ 512. Images were obtained from the vertex to 1st cervical spine, without an IV injection of contrast media.
The CT data were digitally transferred to a personal computer and processed with ImageJ software (http://rsb.info.nih.gov/ij/). A representative image was selected on a coronal CT image perpendicular to the outermost convex area on an axial CT image. After whole bone segmentation of the parietal bone, cortical bone and bone marrow were defined by attenuation densities on CT scan: cortical bone as over 850 Hounsfield units and bone marrow as less than 850 Hounsfield units and their areas were calculated.
Sample processing and immunostaining
Mice were sacrificed by transcardial perfusion of PBS and 4% paraformaldehyde (PFA), skulls and femur were harvested and fixed immediately in ice-cold 4% PFA for 6-8h under gentle agitation. Bones were decalcified in 0.5M EDTA for 3 days (for skulls) or 7 days (for femurs) at 4°C under gentle shaking agitation, washed 5 times in PBS in 5 min intervals, followed by overnight incubation in cryoprotectant solution (20% sucrose, 2% PVP) and embedding in bone embedding medium (8% gelatin, 20% sucrose, 2% PVP). Samples were stored overnight at -80°C. 80 μm-thick cryosections were prepared for immunofluorescence staining.
Bone sections were washed in PBS and permeabilized with 0.3% Triton-X-100 in PBS for 10 minutes at room temperature (RT). Samples were incubated in blocking solution (5% heat-inactivated donkey serum in 0.3% Triton-X-100) for 1 hr at RT. Primary antibodies (rat monoclonal anti-Endomucin (V.7C7) (Santa Cruz, Cat# sc-65495, 1:200 dilution), rabbit monoclonal anti-vATPaseB1/B2 (Abcam, Cat# 200839, 1:200 dilution), goat polyclonal anti-Osteopontin (R&D Systems, Cat# AF808, 1:200 dilution), goat polyclonal anti-CD31 (R&D, Cat# AF3628, 1:200 dilution), rabbit polyclonal anti-Caveolin 1 (Cell Signaling, Cat# 3238, 1:100), goat polyclonal anti-VEGF164 (R&D Systems, Cat# AF-493-NA, 1:200 dilution), rat monoclonal APC-conjugated anti-CD117 (c-Kit) (BD Biosciences, Cat# 553356, 1:100 dilution) were diluted in PBS with 5% donkey serum and incubated overnight at 4°C. Next, slides were washed 3-5 times in PBS in 5 min intervals. Species-specific Alexa Fluor-conjugated secondary antibodies Alexa Fluor 488 (Thermo Fischer Scientific, Cat# A21208), Alexa Fluor 594 (Thermo Fischer Scientific, Cat# A21209), Alexa Fluor 647 (Thermo Fischer Scientific, Cat# A31573 or Cat# A21447) diluted 1:500 in PBS with 5% donkey serum were added and incubated overnight at 4°C. Slides were washed 3-5 times in PBS in 5 min intervals. Nuclei were counterstained with DAPI (Sigma-Aldrich, Cat# D9542, 1:1000 dilution). Coverslips were mounted with FluoroMount-G (Southern Biotech, Cat# 0100-01).
In vivo immunostaining and Evans Blue leakage assay
Rat monoclonal anti-CD31 (BD Biosciences, Cat# 553708) was conjugated to Alexa Fluor 647 using the Alexa Fluor 647 Antibody Labeling Kit (Thermo Fischer Scientific, Cat# A20186) according to the manufacturer’s instructions. For blood vessel immunostaining, the conjugated anti-CD31 antibody and rat monoclonal PE-conjugated anti-Endomucin (V.7C7)(Santa Cruz, Cat# 65495 PE) were diluted 1:10 in 200 ml PBS and injected intravenously into the tail vein. For hematopoietic cell immunostaining, rat monoclonal FITC-conjugated anti-CD45 (eBioscience, Cat# 11-0451-82), hamster monoclonal FITC-conjugated anti-CD3e (eBioscience, Cat# 16-0031-82), rat monoclonal PE-conjugated anti-CD45R/B220 (BD Biosciences, Cat# 553090), rat monoclonal FITC-conjugated anti-CD11b (BD Biosciences, Cat# 553310) were diluted 1:10 in PBS and injected intravenously into the tail vein. Mice were sacrificed 1 hr after injection with trans-cardial perfusion with PBS and 4% PFA and bones were harvested and fixed immediately in ice-cold 4% PFA for 6-8h under gentle agitation. The dura mater was carefully removed from the skull with forceps. Bones were decalcified in 0.5M EDTA for 1 day (for skulls) or 7 days (for femurs) at 4°C under gentle shaking agitation, and washed 5 times in PBS in 5 min intervals. Skulls were counterstained with DAPI (1:500 dilution) for 1 hr and trimmed down to the calvarium before mounting with iSpacers (Sunjin Lab, Cat# IS011) in PBS. Femurs were cryosectioned, counterstained and mounted as described above.
For the Evans Blue leakage assay, mice were anaesthetized immediately prior to tail vein injection of 200 ml Evans Blue solution (Sigma-Aldrich, Cat# E2129, 1% v/w). Animals were sacrificed via transcardial perfusion 5 minutes after injection as described above. In order to distinguish vascular leakage in the dura mater from the calvarial bone marrow, dura mater tissues were separated from the calvarial bone before overnight decalcification.
Scanning electron microscopy
Skull and femur from 12-week-old and 73-week-old mice were isolated and submerged in 4% paraformaldehyde, 0.5% glutaraldehyde, 2 mM MgCl2, 2 mM CaCl2 in 0.1 M cacodylate buffer, pH 7.4, under agitation for 2 hours at room temperature. Samples were fixed further overnight in 2% glutaraldehyde, 2 mM MgCl2, 2 mM CaCl2 in 0.1 M cacodylate buffer, pH 7.4 at 4 °C. Bones were then decalcified over 12 days, changing solution every other day in 5% EDTA in 0.1 M cacodylate buffer, pH 7.4 under rotation at 4 °C. Subsequently, 150 μm sections were generated with a vibratome (VT 1200, Leica, Viennna, Austria). Sections were post-fixed in 1% OsmO4, containing 2.5% paraformaldehyde-glutaraldehyde mixture buffered with 0.1M phosphate (pH 7.2) for 5 hours and then were placed in graded ethanol for critical point drying using E3000 (Polaron) critical point dryer. Critical point dried bones were placed on a piece of carbon tape and sputter coated with gold in a SC502 Sputter Coater (Polaron). Specimens were imaged on a Quanta 250 Field Emission Scanning Electron microscope (FEI Quanta 250 FEG, FEI, Hillsboro, OR) installed at the Korea Research Institute of Bioscience & Biotechnology.
Dura mater wholemount immunostaining
Mice were sacrificed by trans-cardial perfusion of PBS and 4% paraformaldehyde (PFA), skulls were harvested and fixed immediately in ice-cold 4% PFA for 6-8h under gentle agitation. Skulls were decalcified in 0.5M EDTA for 24 hours at 4°C under gentle shaking agitation, washed 5 times in PBS in 5 min intervals, trimmed down to the calvarium, and incubated in blocking solution (5% heat-inactivated donkey serum in 0.3% Triton-X-100) for 1 hr at RT. Goat polyclonal anti-CD31 (R&D, Cat# AF3628, 1:100 dilution) was diluted in PBS with 5% donkey serum and incubated overnight at 4°C with gentle agitation. Samples were washed 3-5 times in PBS in 10 min intervals. Alexa Fluor 647 (Thermo Fischer Scientific, Cat# A21447) diluted 1:500 in PBS with 5% donkey serum was added and incubated overnight at 4°C with gentle agitation. Samples were washed 3-5 times in PBS in 10 min intervals and mounted with iSpacers (Sunjin Lab, Cat# IS011) in PBS.
Transient Middle Cerebral Artery Occlusion (tMCAO)
16-week-old female C57BL6/J mice were used throughout the experiments. Animals were anesthetized by intraperitoneal injection of a mixture of 10 mg kg-1 xylazine (cp-pharma) and 90 mg kg-1 ketamine hydrochloride (cp-pharma). Throughout the whole procedure and during recovery, body temperature was maintained at 37°C via a heating pad. After ligation of the left proximal common carotid artery and external carotid artery, a 7.0-nylon monofilament (Doccol Co., NM, USA) with a 0.23mm coated tip was introduced into the distal internal carotid artery via an incision in the ligated common carotid artery. The monofilament was advanced distal to the carotid bifurcation to occlude the middle cerebral artery. Arter topical application of the local anesthetic lidocaine hydrochloride (Xylocain Spray 2%, Aspen) the neck wound was closed temporarily for a 45 min ischemic period. At reperfusion, the monofilament was withdrawn from the carotid artery and the wound was stitched with 4-0 non-resorbable sutures (Ethibond Excel, Ethicon) and the single s.c. injection of Penicillin G 20 000 U (Benzylpenicillin-Natrium, InfectoPharm) was given. The animal was returned to its cage to recover under observation.
Chronic myeloid leukemia
6-week-old female C57BL/6 mice were purchased from Charles River Laboratories (Sulzfeld, Germany) and were used as donors and recipients in all transplants. The transplantation experiments were performed as previously described79. In brief, to induce chronic myeloid leukemia (CML)-like myeloproliferative neoplasia (MPN), donor BM cells from 5-fluorouracil (5-FU) intravenously pre-treated donor mice (200 mg/kg intravenously; 4 days prior to harvest) were pre-stimulated overnight in medium containing stem cell factor (SCF) (50 ng/ml), IL-6 (10 ng/ml) and IL-3 (6 ng/ml) and transduced on two consecutive days with MSCV IRES GFP BCR-ABL1 (CML)-expressing retrovirus or MSCV IRES GFP empty vector retrovirus. Subsequently, transduced cells were intravenously transplanted (2.5x105 cells/mouse) into sublethally irradiated (900 cGy) recipient mice. Mice were sacrificed 14 days after transplantation.
Lineage depletion and transplantation
In order to transplant lineage-negative bone marrow cells, young (10-14-week-old) or old (52-75-week-old) donor mice were euthanized and skulls were harvested. The calvarium was first chopped with scissors in FACS buffer (PBS with 2% fetal calf serum), then crushed with a mortar and pestle. Cell suspension was filtered through a 40 μm mesh filter (Falcon, Cat# 352340), resuspended in RBC lysing buffer (Sigma-Aldrich, Cat# R7757) for red blood cell lysis and washed with FACS buffer. Cells were resuspended in FACS buffer and incubated with a biotinylated anti-hematopoietic lineage antibody cocktail (Miltenyi-Biotec, Cat# 130-092-613, 1:10 dilution), followed by washing with FACS buffer and incubation with R-PE-conjugated streptavidin secondary antibody (Invitrogen, Cat# S866, 1:50 dilution). DAPI (1:1000 dilution) was added to resuspended cells to distinguish live/dead cells and were FACS sorted for live lineage-negative cells on a FACSAria Fusion (BD Biosciences). Sorted cells were intravenously transplanted (5x105 cells/mouse) into lethally irradiated (12 cGy, Best Theratronics, Gammacell 40 Exactor) recipient mice (12-week-old). Mice were sacrificed 14 days after transplantation.
FACS analysis of bone marrow and peripheral blood
Mice from each age group were euthanized and skull and femur were harvested. Skulls were chopped with scissors in FACS buffer before crushed with mortar and pestle; femurs were crushed without chopping. Cell suspensions were strained through a 40 μm mesh filter, resuspended in RBC lysing buffer and washed with FACS buffer. Cells were resuspended and incubated with the following primary antibodies in FACS buffer: biotinylated rat monoclonal anti-hematopoietic lineage antibody cocktail (Miltenyi-Biotgec, Cat# 130-092-613, 1:50 dilution), APC-conjugated rat monoclonal anti-CD117 (BD Biosciences, Cat# 553356, 1:100 dilution), FITC-conjugated rat monoclonal anti-Ly-6A/E (Sca-1) (eBioscience, Cat# 11-5981-85, 1:100 dilution), APC-Cy7-conjugated hamster monoclonal anti-CD48 (BD Biosciences, Cat# 561242, 1:100 dilution), and PE-conjugated rat monoclonal anti-CD150 (SLAM) (Biolegend, Cat# 115904, 1:100 dilution). Cells were washed, resuspended in FACS buffer with Alexa Fluor 405-conjugated streptavidin secondary antibody (Invitrogen, Cat# S32351, 1:100 dilution), washed again before analysis with a FACSymphony A5 Cell Analyzer (BD Biosciences).
Peripheral blood was collected from the submandibular vein with lancets (Medipoint, NY) into EDTA-coated tubes. Blood was resuspended in RBC lysing buffer and washed with FACS buffer. Cells were resuspended and incubated with the following primary antibodies in FACS buffer: biotinylated rat monoclonal anti-hematopoietic lineage antibody cocktail (Miltenyi-Biotgec, Cat# 130-092-613, 1:50 dilution), APC-conjugated rat monoclonal anti-CD117 (BD Biosciences, Cat# 553356, 1:100 dilution), FITC-conjugated rat monoclonal anti-Ly-6A/E (Sca-1) (eBioscience, Cat# 11-5981-85, 1:100 dilution), Pacific Blue-conjugated mouse monoclonal anti-CD45.2 (Biolegend, Cat# 109820, 1:100 dilution), APC-conjugated hamster monoclonal anti-CD3e (eBioscience, Cat# 17-0031, 1:100 dilution), PE-conjugated rat monoclonal anti-CD45R/B220 (BD Biosciences, Cat# 553090, 1:100 dilution), FITC-conjugated rat monoclonal anti-CD11b (BD Biosciences, Cat# 553310, 1:100 dilution). Cells were washed and resuspended in FACS buffer before analysis with a FACSymphony A5 Cell Analyzer (BD Biosciences).
RNA extraction and quantitative PCR
FACS-sorted cells from 10-week-old mouse skulls were lysed and RNA was extracted using a Monarch Total RNA Miniprep Kit (New England BioLabs, Cat# T2010S). Extracted RNA concentration was measured with a NanoDrop 8000 Spectrophotometer (Thermo Fischer Scientific) and cDNA was generated with a LuncaScript RT SuperMix Kit (New England BioLabs, Cat# E3010L). Quantitative PCR with reverse transcription was performed with a BioRad CFX96 real-time PCR system using FAM-conjugated Taqman probes for Vegfa (Mm00437306_m1) or using PowerUp SYBR Green Master Mix (Applied Biosystems, Cat# A25742) with primers designed using Pimer-BLAST or adopted from previously published studies: Vegfa120 (5’-AACGATGAAGCCCTGGAGTG-3’; 5’-TGAGAGGTCTGGTTCCCGA-3’); Vegfa164 (5’-AACGATGAAGCCCTGGAGTG; 5’-GACAAACAAATGCTTTCTCCG-3’); Vegfa188 (5’- AACGATGAAGCCCTGGAGTG-3’; 5’-AACAAGGCTCACAGTGAACG-3’). Gene expression levels were normalized to the endogenous VIC-conjugated Gapdh probe (44326317E) as control.
ELISA
Mice from each age group were euthanized, bones were harvested. Skulls were chopped before being crushed with a mortar and pestle in ice-cold RIPA lysis buffer; femurs were crushed without chopping. Supernatants of centrifuged lysates were further concentrated using an Ultra-0.5 Centrifugal Filter Unit with a 3 KDa cutoff (Millipore, Cat# UFC500396), resulting concentrations were measured using a Pierce BCA Protein Assay Kit (Thermo Fischer Scientific, Cat# 23225), and the concentrations of VEGF-A in tissue extracts were measured using a Mouse VEGF-A Quantikine ELISA Kit (R&D Systems, Cat# MMV00-1).
Hypoxia analysis
Hypoxic cells were detected with the hypoxia probe pimonidazole (Pimo, Hypoxyprobe Inc.) according to the manufacturer’s instructions. Mice were intraperitoneally injected with 60 mg kg-1 1 hour before analysis.
VEGF-A plasmid construction and overexpression
To generate the pLIVE-VEGFA165-HA-MP-Asp8x bone-homing protein containing VEGF165 fused to HA-tag, metalloprotease and 8x Asp peptide sequences, a cDNA fragment encoding amino acids 1-191 of human VEGFA was amplified via PCR using the following oligonucleotide primers: VEGFA-AscI-Fwd: 5'- ATGAACTTTCTGCTGTCT-3' and VEGFA-XhoI-Rev: 5'-CCGCCTCGGCTTGTCACATCTGCA-3' and annealed with the NEBuilder Assembly Cloning Kit.
10-week-old mice were used for hydrodynamic tail vein injection. Animals were injected with 0.5 μg g-1 (plasmid/body weight) pLIVE-Vegfa plasmid suspended in TransIT-EE hydrodynamic delivery solution (Mirus, Cat# MIR5340). The appropriate amount of plasmid was suspended in an injection volume of 10% of the body weight and injected into each individual mouse via the tail vein in 5-7 s as previously reported80.
Adipocyte analysis
To stain for neutral lipids, the entire calvarium or femur cryosections were incubated in BODIPY 493/503 (Invitrogen, Cat# D3922; 1:1000 dilution) for 1 hr at RT with gentle agitation (only calvarium). Samples were washed with PBS 3-5 times at 5 min intervals before mounting.
Analysis of inflammatory cytokines
Mice from each age group were euthanized, bones were harvested. Skulls were chopped before being crushed with a mortar and pestle in ice-cold RIPA lysis buffer; femurs were crushed without chopping. Supernatants of centrifuged lysates were further concentrated using an Ultra-0.5 Centrifugal Filter Unit with a 3 KDa cutoff (Millipore, Cat# UFC500396), resulting concentrations were measured using a Pierce BCA Protein Assay Kit (Thermo Fischer Scientific, Cat# 23225), and concentrations of inflammatory cyotokines were measured with LEGENDplex Mouse Inflammation Panel (13-plex) with V-bottom plates (Biolegend, Cat# 740446). Analysis on a FACSymphony (BD Biosciences) and quantification were performed according to the manufacturer’s protocol. Data analysis was performed using software provided by Biolegend. Manual gating was used to define beads A and B, while and automatic gating strategy was used to gate individual cytokines in the APC-PE plot.
Irradiation with partial shielding
Mice were anesthetized with ketamine (100 mg/kg) and xylazine (10 mg/kg) prior to irradiation. For partial shielding, the entire head or both legs of an animal were inserted into the opening of the cylindrical 1-inch-thick lead shield (JRT Associates, Cat# PTI-50-P) and exposed to lethal irradiation (12 cGy). The animal was returned to its cage to recover under observation.
Skull BM photoconversion
Vav1-KikGR mice were anesthetized with ketamine (100 mg/kg) and xylazine (10 mg/kg). A skin-flap was generated to expose the calvarium, as previously described81. Each exposed area of the calvarium was then exposed to UV light from a Zeiss Axio Imager (Zeiss Microscopy) for 60 seconds, confirmed for photoconversion from green to red fluorescence, before exposing another area. The skin flap was sutured back together and peripheral blood was analyzed by flow cytometry, as described above, to check for the presence of photoconverted cells, which were non-existent in the peripheral blood immediately after photoconversion. 1 week after photoconversion, peripheral blood was drawn, stained for Alexa Fluor-conjugated rat monoclonal anti-CD45, and was analyzed by flow cytometry for CD45+ photoconverted hematopoietic cells derived from the skull BM.
Statistical analysis
No statistical methods were used to predetermine sample size. The experiments were randomized and investigators were blinded to allocation during experiments and outcome analyses. All values are presented as mean ± standard deviation (SD). Statistical significance was determined by the two-tailed unpaired Student’s t test between two groups or the Tukey multiple comparison test (one-way ANOVA) for multiple-group comparison. Statistical analyses were performed using GraphPad Prism 9.0 (GraphPad Software). Statistical significance was set at P < 0.05.