Material preparation
80 healthy permanent teeth were collected after obtaining patients’ informed consent at the Department of Oral and Maxillofacial Surgery of Affiliated Stomatological Hospital of Nanjing Medical University. First, soft tissues, enamel and cementum were removed from the collected teeth. Then successfully separated dentin was calcined using a box furnace at 950℃ with a heating rate of 10 °C min− 1, and maintained at 950℃ for 30 min. After that, we let the production cool down naturally to room temperature and ground them into powder. The powder was finally filtered out and collected as dentin-derived inorganic minerals (DIM). X-ray diffraction (XRD) technique was utilized for determining DIM constituents. 20 g DIM was added into 100 mL alpha minimum essential medium (α-MEM, Gibco, Life Technologies, USA) under stirring to form a uniform mixture. The mixture was placed at 37℃ in 5% CO2 for 5 d, then centrifuged at 400 rpm for 10 min, and the supernatant layer was purified by a 0.22 µm strainer, finally hermetically preserved as mother solution of DIM-CM. In accordance with the concentration of bioceramic extracts studied in documents, the original solution was diluted to 20 mg/mL, 2 mg/mL, 0.2 mg/mL, 20 µg/mL, 2 µg/mL for the following experiments.
Cell isolation and culture
BMMSCs were harvested from 3-week-old male Sprague-Dawley (SD) rats bought from the Animal Core Facility of Nanjing Medical University. In brief, the rats were dissected, separating the femurs and tibias. Then scissors were used to open the marrow cavity and bone marrow was flushed out with 5 mL syringes supplemented with complete medium into the 15 mL centrifuge tubes. After that, the collection was centrifuged at 1000 rpm for 5 min and subsequently resuspended in α-MEM containing 10% fetal bovine serum (FBS, Gibco), 100 g/mL streptomycin and 100 U/mL penicillin. Cells were then inoculated in culture flask and cultured in an incubator with 5% CO2 at 37 °C. The medium was changed every three days after the initial plating. When reached 80% confluence, cells were amplified by passage culture.
Alkaline phosphatase (ALP) activity and staining
ALP activity assay kit (Jiancheng, Nanjing, China) was used to detect the ALP activity of treated BMMSCs based on the guildines provided by the manufacturer. Cell lysis was obtained with 100 µL 1% TritonX-100 for 30 min followed by the ultrasonication, then added into the testing agents. Finally, the ALP activity was examined using a microplate (Bio-tek, USA). ALP staining was conducted with the NBT/BCIP staining kit (Beyotime, Guangzhou, China). Briefly, the treated BMMSCs were fixed in 4% paraformaldehyde solution for 30 min and then rinsed with PBS twice. Subsequently, cells were stained with ALP premix substrate solution at 37 °C for 30 min away from light.
CCK-8 assay
Cell proliferation was evaluated with the Cell Counting Kit-8 (CCK-8, Dojindo, Kumamoto, Japan) according to the manufacturer′s instructions. 1000 cells/well were seeded into 96-well cell culture plates. At a given point in time (1, 3, 5, 7, 9 d), cells were incubated with 10 µL CCK-8 solution for 2 h away from light. The absorbance at a wavelength of 450 nm was calculated with a microplate reader (Bio-tek, USA).
5-Ethynyl-2′-deoxyuridine (EdU) assay
Cell proliferation analysis was carried out with an EdU detection kit (RiboBio, Guangzhou, China). Cells were cultured with 50 µM EdU for 2 h at 37℃, then fixed in 4% paraformaldehyde for 30 min and premeabilized with 0.5% Triton X-100 for 10 min. After that, cells were treated with Apollo® reaction cocktail for 30 min. For nuclear staining, cells were treated with Hoechst 33342 for 30 min and visualized with a fluorescent microscope (Olympus, Tokyo, Japan).
Flow cytometry
Cells were digested by trypsin, resuspended in 4 mL PBS and centrifuged at 1000 rpm for 12 min. Then cells were fixed with 75% precooled ethanol at 4℃ overnight, followed by staining in 1 mL PI. Cell cycle was detected using flow cytometry (BD Biosciences, San Jose, CA) and proliferation index (PI, G2/M + S) in each group was count and compared. For cell apoptosis detection, cells were digested by trypsin, resuspended in 6 mL PBS and centrifuged at 1000 rpm for 6 min twice, then examined with flow cytometry.
Alizarin red staining
Cells mineralization capacity was examined with alizarin red staining. In short, cells were seeded into 12-well plates at a density of 5 × 104 cells per well and incubated for 14 days. Then cells were fixed in 95% ethanol for 1 h. Subsequently, cells were stained with the Alizarin red S solution (pH 4.2, Sigma-Aldrich, USA) for 10 min. The mineralized nodules were observed and photographed under an inverted microscope. For quantification of mineralization, the dye was dissolved using 10% cetylpyridinium chloride (Sigma, UK) for 1 h, then detected by a microplate reader at 540 nm wavelength.
Quantitative real-time polymerase chain reaction (qRT-PCR)
Total RNA was isolated from BMMSCs using TRIzol Reagent (Invitrogen, Carlsbad, CA, USA) and processed into cDNA with the PrimeScript RT Master Mix Kit (TaKaRa Bio, Otsu, Japan). qRT-PCR was conducted by an ABI 7300 Real-Time PCR System (Applied Biosystems, Carlsbad) by mixing cDNA templates, primers (Sangon Biotech, Nanjing, China) and the SYBR Premix Ex Taq kit (TaKaRa Bio). GAPDH was used as the control. The relative primers were displayed below: OCN: forward, 5′-ATTGTGACGAGCTAGCGGAC-3′, reverse, 5′-CTGTGCCGTCCATACTTTCG-3′, OSX: f, 5′-GGAGGCACAAAGAAGCCATA-3′, r, 5′-GGGAAAGGGTGGGTAGTCAT-3′, RUNX2: f, 5′-TTAACGTCAGCAGGAGCAG-3′, r, 5’-CTTCACCCCCAGGACCAAG-3′, ALP: f, 5′-GGAACGGATCTCGGGGTACA-3′, r, 5’-ATGAGTTGGTAAGGCAGGGT-3′, OPN: f, 5′-GCGATCGATAGTGCCGAGAA-3′, r, 5′- TCGTGGCTCTGATGTTCCAG-3′, COL-I: f, 5′-GCAATGCTGAATCGTCCCAC-3′, r, 5′- CAGCACAGGCCCTCAAAAAC-3′, GAPDH: f, 5′-CACTGAGCATCTCCCTCACAA-3′, r, 5′-GTATTCGAGAGAAGGGAGGGCT-3′.
Western Blot
Total proteins were obtained with RIPA lysis buffer (Beyotime). Individual samples (10 µg/lane) were subjected to sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS–PAGE) and blotted onto polyvinylidene fluoride (PVDF, Millipore, MA, USA) membranes. The membranes were blocked using 5% BSA and incubated with primary antibodies, then incubated with goat anti-rabbit and mouse secondary antibodies (1:5000, Proteintech, Wuhan, China) for 1 h. The proteins were visualized with a Western Blotting Imaging System (GE Healthcare, USA). The primary antibodies were displayed below: anti-OCN (1:1000, ab93876, Abcam, Cambridge, UK), anti-OSX (1:1000, ab22552, Abcam), anti-RUNX2 (1:1000, ab76956, Abcam), anti-ALP (1:1000, ab95462, Abcam), anti-OPN (1:1000, ab8448, Abcam), anti-COL-I (1:1000, ab34710, Abcam), anti-ERK (1:1000, #4695, Cell Signaling Technology, MA, USA), anti-p-ERK (1:1000, #4370, CST), anti-JNK (1:1000, #9252, CST), anti-p-JNK (1:1000, #9255, CST), anti-p38 (1:1000, #8690, CST), anti-p-p38 (1:1000, #4511, CST) and anti-GAPDH (1:1000, AP006, Bioworld, China).
Animal experiments
Calvarial defect models were performed in 24 male SD rats at 8 weeks of age bought from the Animal Core Facility of Nanjing Medical University. The rats were given an intraperitoneal injection of 10% chloral hydrte to anaesthetize them: the dosage was 0.4 mL/100 g body weight. Then a sagittal incision (length of around 2 cm) was created on the scalp of the rats. Thereafter,the soft tissue covering the calvarium was sharply divided and pushed gently into the lateral. Furthermore, two 5-mm-diameter bilateral bone defects were drilled on the calvarias using a portable dental turbine (Xin he an, Wu han, China) and a circular trephine. Finally, 5 mg DIM powder was subsequently implanted into the bone defect on the left side while the right side was left empty (control). The rats were separated into 3 groups at random: 4-week implantation group, 8-week implantation group and 12-week implantation group, respectively. Post-operative antibiotic therapy was then provided by intramuscular administration of 2 × 105U/d penicillin for 3 days. The rats were euthanized after 4, 8, 12 weeks. The calvarias were harvested and analyzed with Micro-CT assay and histological analysis. The experiments were approved by the protocols of the Institutional Animal Care and Use Committee (IACUC) of Nanjing Medical University (IACUC-1703024).
Microcomputed tomography (Micro‐CT) assay
After 4, 8, 12 weeks of surgery, the rats were sacrificed and the calvarias were harvested, followed by fixation in 4% paraformaldehyde, then examined with a Scanco vivaCT 80 scanner (Scanco Medical AG, Bruttisellen, Switzerland) referring to the settings: 15.6 µm resolution at 55 kV and 145 µA. Three-dimension (3D) structures of samples were reconstructed with system software. The bone parameters of the samples including bone mineral density (BMD) and bone volume fraction (bone volume/total volume, BV/TV) were also calculated.
Histological analysis
Calvarias were fixed in 10% neutral formalin for 48 h, then decalcified in 20% EDTA for 2 months. Thereafter, the specimens were embedded in paraffin. 5-µi-thick slices were sectioned and stained with hematoxylin-eosin (H&E) and Masson’s trichrome, then fixed with neutral balsam and analyzed under a microscope (Leica, Wetzlar, Germany).
Statistical analysis
Each experiment was performed at least in triplicate. The data were presented as the mean ± SD. Statistical analyses were evaluated with SPSS software 16.0 using Student's t-test or one-way analysis of variance (ANOVA). P values < 0.05 were considered statistically significant.