In this study, an efficient method was developed and validated to determine cyproconazole in Sichuan pepper samples using the QuEChERS procedure and ultrahigh-performance liquid chromatography-tandem mass spectrometry. The average recoveries of the method were 96.2%-104.5% with the relative standard deviation (RSDs) below 7.6%, the limit of detection (LOD), and the limit of quantitation (LOQ) was 0.001 mg/kg and 0.02 mg/kg. The field trial results showed that cyproconazole in two Sichuan pepper matrices was rapidly dissipated with half-lives less than 8.8 days, which could be regarded as an easy degradation pesticide. The terminal residues of cyproconazole in Sichuan pepper samples were lower than the maximum residue limit (MRL) set by China (0.2 mg/kg registered on wheat). The calculated hazard quotient and acute hazard index lower than 100% illustrated that the use of cyproconazole, even at 1.5 times the highest recommended dose, does not pose any hazards to consumers.