Plant Growth
For this study, we selected two types of rice: Mudgo, which has high resistance to BPH, and TN1, which is highly susceptible to BPH. We pre-germinated the seeds of both types of rice in water for 2–3 days, changing the water twice a day. After this, we planted the seeds in a mixture of peat and vermiculite (3:1) and waited until the seedlings were 15 days old. We then transplanted each seedling into an individual plastic pot (diameter 8 cm, height 10 cm). After 40–50 days of growth and at the jointing stage, we used the plants for experimentation. Throughout the process, we cultivated all plants in a greenhouse without pesticides, maintaining a temperature of 27 ± 3°C, relative humidity of 65 ± 10%, and a 16-hour light/8-hour dark cycle.
Insect Colonies
Specimens of BPH were maintained on conventional rice plant TN1 for > 20 generations. In addition, specimens of SSB were introduced and maintained on an artificial diet for > 70 generations23. Both insect colonies were kept at 27 ± 2°C, 70–80% RH, and a photoperiod 16-hour light/8-hour dark cycle at the Anyang Institute of Technology, China.
Behavioral and biological characteristics studies of caterpillars and planthoppers
Insect bioassay
Forty-eight hours after the specimen plants were transferred to a greenhouse growth cabinet for experimentation (27 ± 1°C, 75 ± 5% RH, 16 L: 8 D photoperiod), the Mudgo or TN1 rice plants were individually infested with one 3rd instar larva of SSB that had been starved for at least 3 h. Following three days, SSB caterpillars were observed to check for drilling into the stems of the plants causing visible damage. These plants were classified as under ‘damaged’ treatment throughout the experiment. Plants that remained undamaged during the experiment are referred to as under the ‘healthy’ treatment. The caterpillars remained on the plants for the full duration of the experiments.
Host preference of planthoppers
To study the BPH preference of choice in host plants, we compared four pairs of rice hosts infested with BPH using ‘H’ equipment as described by Wang et al., 201819. The four plant pairs included: (i) healthy Mudgo rice plants versus healthy TN1 rice plants; (ii) damaged Mudgo rice plants versus healthy Mudgo rice plants; (iii) damaged TN1 rice plants versus healthy TN1 rice plants; (iv) damaged Mudgo rice plants versus damaged TN1 rice plants. For each test, the main stems of the two rice plants were contained in a cylindrical plastic tube (diameter 8.0 cm, length 19.0 cm).Then twenty 3rd instars of BPH were released in the middle of the ‘H’ equipment and the number of planthoppers per plant was recorded for seven consecutive days. Each paired choice test was repeated 20–23 times (replicates).
Bioassays of planthoppers
To study BPH development in healthy or damaged TN1 or Mudgo rice, we conducted two bioassays. The first bioassay was carried out to determine the survival rate of BPH. The second bioassay was performed to establish other BPH life parameters such as rate of development, weight and body length, sex ratio, and brachypterous ratios. In this experiment, damaged and healthy rice plants were treated as described above in the choice study. After the 48 h wait following plant transfer to the greenhouse, yellow leaves were removed and the main stem of a single living plant from each treatment was enclosed in a plastic cylindrical tube (diameter 8.0 cm, height 9.5 cm). Lastly, a single first-instar BPH nymph was introduced into the cylindrical tube. Thereafter, we checked the BPH every day, removing the molting, and recording life parameters until to the adult. The living adult nymphs were then weighed on an electronic balance (CPA2250, Sartorius AG, Germany, readability = 0.01 mg), and photographed with a digital camera (DP73, Olympus, Japan) mounted on a microscope (SZX7, Olympus, Japan) to determine their body length. The procedures for both bioassays were identical. Each bioassay test was repeated 55–140 times (in replicates).
Monitoring of BPH Feeding Behavior
We selected adult brachypterous females for this experiment. The electrical penetration graph (EPG) technique was used to monitor the feeding behavior recorded using a GIGA-8 DC EPG (Wageningen University) amplifier system24, 25. To improve monitoring, we first slowed insect activity by cooling BPH to -20℃ for 60 s and then quickly and carefully connected a 3 cm length of 18.5 mm diameter gold wire with conductive silver glue to their dorsum. Following a 2 h starvation period, the BPH with gold wire were attached to a DC-EPG amplifier. To complete the electronic circuit, they were also connected to a stem area of each rice plant 5–8 cm above the soil. Throughout the experiment, the devices were placed around a Faraday cage to encourage clear electrical signals. BPH behavior was recorded for six hours continuously with 26–33 replicates per treatment. Data gathering, data analysis, and calculated total time of each waveform were attained using the Stylet + d Software (W.F. Tjallingii, Wageningen, the Netherlands).
Bph1 gene expression in SSB-damaged rice
Specific primers designed by Beacon Designer software (Premier Biosoft, version 7.0) and synthesized by Sangon Biotech were used to check the change of Bph1 gene 22 expression in Mudgo healthy or SSB-damaged rice. For negative control, the same method above was used on TN1. Information on primer sequences is shown in Table S1. Housekeeping gene ubiquitin 526 was used for quantitative real-time PCR (qRT-PCR) as an internal gene analyses. The plant stem samples were collected from SSB-damaged rice at different time points (0, 3, 6, 12, 24, 48, 72, and 96 h). Total RNA was extracted using TRIzol reagent (Invitrogen, Carlsbad, CA, USA). The first-strand cDNA synthesis kit (Promega, Madison, WI, USA) was used to reverse transcribed 500 ng total RNA and DNase I (Thermo Fisher Scientific, Waltham, MA, USA) was used to digest. Then the cDNA 50X was diluted for qPCR. The qRT-PCR reaction was performed using SYBR Premix Ex Taq Ready Mix with ROX reference dye (Takara Biotech, Kyoto, Japan) and an ABI life Real-time PCR Q6 instrument (Thermo Fisher Scientific). PCR amplification program reactions were all carried out under the following conditions: one cycle at 30 s at 95°C, followed by 40 cycles of 5 s at 95°C and 34 s at 60°C. Cycle threshold (Ct) values for the ubiquitin 5 gene were used to normalize the expression patterns of the analyzed genes from 0 h and other time points. The relative fold changes of gene expression were calculated using the comparative 2−ΔΔCT method27.
Transcriptome Analyses
RNA Extraction, Library Preparation RNA-Sequencing, and Quantitative Real-Time PCR
Potted Mudgo rice plants were housed in a cylindrical plastic tube and infested with one 3rd instar larva of SSB per plant. The larvae were starved for 3 h before they were caged with the rice plants. After 72 h, the main rice stems 8–10 cm around the area damaged by the larvae were cut off and split in the middle to take out SSB. The control healthy rice was also housed in a cylindrical plastic tube but without SSB and harvested at the same time. All plant samples were immediately frozen in liquid nitrogen and stored at −80°C for later analyses. Three replicates samples were collected and used for transcriptome analyses.
Total RNA was extracted from the rice stem samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) according to the manufacturer’s instructions. RNA degradation and contamination were validated using electrophoresis on 1% agarose gel with 180V voltage for 16 min and quantified concentration using the NanoPhotometer® spectrophotometer (IMPLEN, CA, USA). An RNA library was constructed with a 3 µg RNA per sample using NEBNext® Ultra™ RNA Library Prep Kit for Illumina® (New England Biolabs, Ipswich, MA USA) following the manufacturer’s recommendations. Index codes were added to attribute sequences to each sample. The library preparations were sequenced on an Illumina Hiseq platform (Illumina Hiseq 4000; Illumina, San Diego, CA, USA), and 125 bp-150 bp paired-end reads were generated.
To validate the results of RNA-seq, 17 genes were selected based on the signaling of phytohormones, primary metabolism, and secondary metabolism for quantitative real-time PCR (qRT-PCR) analyses. The plant stem samples for qRT-PCR were collected from the same split stem which was sampled for RNA-seq experiments and by the same method.
RNA-Sequencing Data Analysis
The transcriptome data analysis was conducted according to the discription as Liu et al., 201628. Differential expression analysis of damaged and healthy groups was performed using the DESeqR package (1.18.0)29 and filtered with the following thresholds: P-value < 0.05 and |log2 (fold change)| ≥ 2 using the Benjamini and Hochberg’s approach for controlling the false discovery rate30.
Gene ontology (GO) enrichment analysis was carried out on the GOseq R package, in which gene length bias was corrected31. The Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis of the DEGs was conducted using the clusterProfiler package in R and KOBAS software to test the statistical enrichment of differential expression genes in KEGG pathways32.
Quantification of phytohormones and related gene expression
To measure the amount of JA, JA-Ile, SA, and ABA phytohormones, tissue was collected from the rice stems at different time points (0, 3, 6, 12, 24 48, and 72 h). The phytohormones were extracted and analyzed using high-performance liquid chromatography-tandem mass spectrometry (HPLC-MS/MS, LCMS-8040 system, Shimadzu, Kyoto, Japan) following the method of Wu et al., 200733. Each phytohormone was quantified by comparing its peak area with the peak area of its respective internal standard. Four replicates stem samples for each time point were analyzed.
To further verify the genes were in response to SSB feeding, we conducted a qRT-PCR analysis to quantify the expression of 19 genes involved in JA biosynthesis and signaling in rice stems at 0, 3, 6, 12, 24, 48, 72, and 96 hours of SSB infestation. The qRT-PCR method was as described above and the primers are shown in Table S10.
Volatile analysis
Collection and analysis of rice plant volatiles
Damaged Mudgo or TN1 rice plants were individually infested with one 3rd instar larva of SSB for 3 days. Healthy plants were the same batch without infested. Volatile compounds were collected using a dynamic headspace collection system as described by Jiao et al., 201834. In brief, five plants as a treatment group were transferred into a glass bottle. Next, the air was filtered utilizing a combination of activated charcoal, molecular sieves (5 Å, beads, 8–12 mesh, Sigma-Aldrich, St Louis, Missouri, USA), and silica gel Rubin (cobalt-free drying agent, Sigma-Aldrich, St Louis, Missouri, USA). Lastly, the air was inserted into the glass bottle and collected via a glass tube (5 mm diameter, 8 cm height) filled with 30 mg Super Q adsorbent traps (80/100 mesh, Alltech Associates, Deerfield, IL, USA) lasted for 4 h at 400 mL/min.
The gas chromatography-mass spectrometry (GC-MS) analysis method was described by Hu et al., 202035. A quantity of 500 ng of nonyl acetate was added to the samples as an internal standard for relative quantifications of compounds based on areas36. The collection of plant volatiles was repeated seven or eight times for each treatment.
Choice bioassay using a Y-tube tube olfactometer
Based on the GC-MS results, 16 volatiles, including heptadecane, benzeneacetaldehyde, β-myrcene, naphthalene, dibutyl phthalate, pentadecane, tridecane, hexanal, linalool, hexadecane, 1-hexanol, 2-heptanone, 2-nonanone, dibutyl phthalate, tetradecane, methyl salicylate, were selected for further experiments to determine their effects on BPH behavior. These compounds had shown significant induction or were newly produced in response to SSB damage. The compounds with analytical grade purity were purchased from Shanghai Aladdin Bio-Chem Technology Co., Ltd (Shanghai, China).
To investigate the behavioral responses of BPH females to the selected compounds, a Y-tube (10 cm stem; 10 cm arms at 75° angle; 1.5 cm internal diameter) was used, one side was the testing odor and the other side was the control odor hexane. The testing volatile compounds were individually dissolved in pure hexane. Each compound was tested at a high dose of 200 µL per 1 ml pure hexane and a low dose of 2 µL/mL. Then, the 10 µL of the volatile solution or 10 µL pure hexane (control) were loaded on the filter papers (1 × 2 cm) and were, respectively, put into two glass jars (diameter 10.5 cm; height 25 cm) as a pair of odor sources. The procedure for the Y-tube assays was the same as the dynamic headspace collection system described above. Sixty insects were tested for each compound.
Metabolic Analyses
Collection and analysis of rice metabolic
The treatment of rice was identical to the transcriptome analyses. Metabolic samples were analyzed using liquid chromatography-mass spectroscopy (LC-MS) and gas chromatography-mass spectrometry (GC-MS) platforms by Metabolon and performed by the automated Microlab STAR® system (Hamilton Company, Bonaduz, Switzerland). The method was described by Liu et al., 2016 28. In brief, stem samples were divided into four portions for the analysis used: i) LC-MS with positive ion mode electrospray ionization, ii) LC-MS with negative ion mode electrospray ionization, iii) GC-MS, and iv) reserved for backup, respectively. The quantitative values of the metabolites were derived from integrated raw detector counts of the mass spectrometers. Those with great variations due to instrument-integrated tuning differences were normalized on a similar graphical scale. The relative abundances of each metabolite were log-transformed before analysis to meet normality. Student T-test was used to compare the abundance of each metabolite between damaged and healthy rice plants. Ten samples were collected and used for each treatment.
Identification of metabolite toxicity to BPH using artificial diet
To examine whether the artificial diet contained metabolite that affects normal development and survival rate of BPH, two tests were performed. To study development, we conducted a mean relative growth gain for newly brachypterism females. For evaluating the survival rate, a fitness bioassay was carried out on newly hatched nymphs of BPH. Both were fed the artificial diet by Fu et al. (2001)37. A primary stock solution of linoleate, linoleate 9(S)-HOTrE, jasmonic acid, 9(S)-HpOTrE, and 9(S)-HpODE was respectively prepared with acetone. The gradient dilution by the artificial diet reached concentrations of 0.1, 1.0, and 10.0 mmol/L. β-Sitosterol and stigmasterol were prepared with distilled absolute ethyl alcohol. The gradient dilution by the artificial diet reached the concentrations of 0, 0.031, 0.063, 0.125, 0.25, 0.5, and 1 mg/mL diet of β-Sitosterol, and 0, 0.0008, 0.004, 0.02, 0.1, 0.5, 2.5 mg/mL diet of stigmasterol. Glass tubes (2.5 cm diameter, 15 cm length) with smooth openings at both ends were used as feeding devices. One side held feed packaging covered with double-deck stretched paraffin film (Parafilm M, USA), while the other side ended with an air terminal secured with 80-mesh nylon nets. 10 µL of the artificial diet was placed on the sandwiched food bag film. (1) For relative growth gain calculation: a newly brachypterous female of BPH was starved for 2 hours and weighed as weight 1. Then they were randomly selected and introduced into the tube for 48 hours of feeding and subsequently weighed as weight 2. Relative growth gain = weight 2 - weight 1. (2) For survival fitness rate calculation: a newly hatched BPH nymph was introduced into the tube and checked daily, the ecdysis removed, and the artificial diet renewed. The feeding container was covered by a black wet cotton cloth, except at the ends where the food bag opened to a light source. Their development and mortality were recorded daily. Twenty insects were tested in each treatment for relative growth gain and fifty insects for survival rate fitness.
Statistical analyses
Before conducting any statistical analysis, we ensured to check the normality and equality of variances for all data. Paired t-tests were used to compare planthopper feeding choices. We used independent student’s t-tests to analyze body weight, body length, development time, EPG activities, volatiles, and metabolome composition. To compare the survival rates of planthoppers, sex ratio, and brachypterous ratios, we carried out a Chi-square test. We also used Dunnett’s tests to compare genes in the JA pathway and the total amount of phytohormone in rice stems that had been damaged by SSB larvae for 3, 6, 12, 24, 48, or 72 hours relative to the undamaged control (0 hours). Additionally, we conducted Dunnett's tests to compare the BPH relative growth gain with different concentrations of metabolome composition. All statistical analyses were performed using the IBM SPSS 22.0 software package.