2.1. Ethics and Subjects
Naïve outbred male Sprague-Dawley rats (n = 74; Animal Resource Centre, Perth, Australia) were aged 6 weeks and weighed 203 ± 7.0 grams on arrival. Methods are reported according to the ARRIVE 2.0 guidelines (Percie du Sert et al. 2020). Male rats were used due to the previous validation of the radial maze affective disability paradigm in male rats only.
2.2. Experimental Design
Rats were singly housed in a 12:12 reverse light-dark cycle and provided with nesting material and environmental enrichment. Rats acclimated to their housing conditions for seven days after arrival during which standard chow was available ad libitum. Cage position and experimental group were randomly assigned. Rats were all tested, underwent surgery, and were perfused in cage order, and all experimental procedures were blocked to ensure equal representation of experimental groups. Due to impracticalities, during husbandry the experimenter was only blinded to experimental groups prior to surgery. The experimental timeline is outlined in Fig. 1.
The optimal sample size, given a predicted effect size (f) of 0.8 and power (1-β) of 0.8, was calculated a priori to be n = 5 per group in G*Power 3.0. This was based on the primary outcome measure, the time spent in the central atrium of the radial maze, a highly consistent indicator of other measures of disrupted foraging behaviours in this paradigm (Fiore and Austin 2018). However, since only 20–40% of nerve-injured rats will go on to display affective disturbances (Fiore and Austin 2018, 2019), we included many more rats in the CCI vehicle (n = 37) and CCI minocycline (n = 21) groups than the sham vehicle (n = 9) and sham minocycline (n = 7) groups to allow this behaviourally distinct subgroup to develop.
2.3. Chronic Constriction Injury and Minocycline Administration
Chronic constriction injury (CCI) of the sciatic nerve was conducted as previously described (Bennett & Xie, 1988; see Fiore & Austin, 2018 for a detailed protocol). The sham group had the sciatic nerve exposed under the same surgical conditions, but CCI was not performed. Sham and CCI minocycline groups were administered 40mg/kg/day minocycline hydrochloride (M344800, Toronto Research Chemicals, Canada) dissolved daily in their drinking water from 24 hours following surgery. This was chosen based on a previously published protocol (Hinwood et al. 2012).
2.4. Quantitative Motor and Sensory Testing
Motor coordination was assessed using the rat rotarod (Ugo Basile, Varese, Italy), which has been used in CCI models previously to investigate the effect of injury on motor function (Hara et al. 2022). Rats were placed on the apparatus as it rotated at 5rpm accelerating to 35rpm over 3 minutes. The latency to fall off the apparatus (in seconds) was taken as the average of three trials. The placement order of rats on the rotarod was counterbalanced between trials.
Evoked mechanical hypersensitivity was measured using a dynamic plantar aesthesiometer (Ugo Basile, Varese, Italy). The filament was placed against the plantar surface of each hindpaw and allowed to ramp from 0g at 1g/s until the rat withdrew the paw or 50g was reached. A trial was recorded if the rat was determined to have withdrawn the paw as a direct consequence of the mechanical stimulus. The withdrawal threshold (in grams) was taken as the mean of five technical replicates for each hindpaw on the days marked in Fig. 1.
2.5. Affective and Spatial Memory Behaviours
To assess affective disturbances following surgery, deep behavioural phenotyping of affective behaviours was performed by testing rats once each day for 21 days using the radial arm maze foraging paradigm (modified from Olton and Werz, 1978) as reported previously (Fiore and Austin 2018, 2019). Rats underwent seven days of shaping with multiple sucrose pellets placed in each of the arms (Bio-Serv Dustless Precision Pellets, cat no. F0021) to motivate exploration. For all experimental post-surgery trials, only the cups of arms 1, 2, 4, and 7 were baited to allow assessment of memory performance (Fig. 2a).
Rats were placed singly in the central atrium of the maze and allowed to explore for five minutes. Video recordings were coded for affective- and memory-related behaviours using Solomon Coder (version 19.08.02, solomon.andraspeter.com). Each entry into an arm of the maze was given one of the following definitions: pellet eaten (PE), pellet omission (PO), working memory error (WME), reference memory error (RME), and hybrid memory error (HME; Fig. 2b). Affective behaviours, coded by either duration or frequency, included time spent in the central atrium (TICA), time spent in the end of arms (TIEOA), grooming, rearing, climbing, nose pokes (Fig. 2c), and stretch-attend postures (SAPs; Fig. 2d). These endpoints are well-attested in similar behavioural paradigms including the open field and elevated plus maze tests (Mikics et al. 2005), and are summarised in Table 1.
Table 1
Description and classification of affective-motivational endpoints measured daily in the radial arm maze paradigm.
Parameter | Description | Classification |
Time in central atrium (TICA) | Time spent in the central chamber of the maze, withdrawn from the foraging task. The key measure used to define behavioural subgroups. | Withdrawal; anhedonia-like behaviour |
Time in end of arm (TIEOA) | Time spent in the distal third of an arm of the maze. | Exploratory behaviour |
Nose pokes | Frequency with which the rat, while in the central atrium, poked its snout into an arm, then withdrew back to the atrium. Also referred to as head dipping. | Risk assessment |
Stretch-attend postures (SAPs) | Frequency with which the rat, with its hindpaws in the central atrium, stretched its body out to place its forepaws in an arm of the maze, perhaps engaged in investigative whisking, and then withdrew back to the atrium. | Risk assessment |
Grooming | Time spent engaging in ritualistic grooming behaviour. | Anxiety-like behaviour |
Rearing | Time spent on its hindpaws with one or more forepaws against the walls of the central atrium or the proximal two-thirds of an arm. | Exploratory behaviour |
Climbing | Time spent climbing on top of the apparatus. | Exploratory behaviour |
Rats were categorised into groups based on affective phenotype in the radial maze. A CCI rat, either vehicle- or minocycline-administered, was classified as affected if, for at least three days between each of days 1–6 and 7–12 post-surgery, the time they spent in the central atrium of the maze normalised to the number of arm entries was greater than three standard deviations above the mean of the relevant sham group on that day. Rats not meeting this criterion were classified as unaffected.
2.6. Tissue Processing and Immunofluorescence Staining
On post-surgery day 21, following radial arm maze testing, rats were deeply anaesthetised with 120mg/kg i.p. sodium pentobarbital (Lethabarb) and transcardially perfused with 0.9% w/v cold saline followed by 4% w/v cold paraformaldehyde solution, pH 9.6. The brain was extracted and post-fixed for 1 hour. Tissue was then transferred to 30% w/v sucrose solution in phosphate buffered saline, pH 7.4 (PBS, with 0.05% w/v sodium azide). Brains were cryosectioned and transferred to antifreeze for long-term storage at -20°C. Sciatic nerves were inspected to verify the appropriate placement and tightness of ligatures.
Double- or triple-label immunofluorescence staining was performed on free-floating sections (n = 6 per group). All steps were carried on an orbital shaker in a volume of 1.5mL per series, with three washes in PBS performed between all staining steps, and incubations performed at room temperature unless otherwise specified. Sections underwent heat-induced epitope retrieval in 0.01M sodium citrate buffer, pH 6, with 0.05% v/v Tween 20 at 80°C for 30 minutes. Sections were then incubated in 0.1% w/v sodium borohydride (NaBH4) in PBS for 30 mins to reduce autofluorescence, permeabilised with 0.3% v/v Triton X-100 in PBS for 30 mins, and blocked in 10% v/v normal horse serum (NHS) in 0.3% v/v Triton X-100 in PBS for 30 mins. For experiments using tertiary streptavidin amplification, additional avidin (0.05mg/mL in PBS for 30 mins) and biotin (0.1mg/mL in PBS for 30 mins) incubations blocked endogenous biotin.
Sections were then incubated in the first primary antibody solution (one of: 1:300 rabbit anti-rat BDNF [Abcam ab108319, RRID:AB_10862052], 48 hours; 1:750 rabbit anti-rat CD206 [Abcam ab64693, RRID:AB_1523910], 24 hours; 1:400 rabbit anti-rat IL-1β [Abcam ab9722, RRID:AB_308765], 72 hours; 1:300 rabbit anti-rat phospho-p38 MAPK [Cell Signaling Technologies #4511, RRID:AB_2139682], 72 hours; 1:300 rabbit anti-rat FosB/ΔFosB [Invitrogen MA5-15056, RRID:AB_10983364], 72 hours) in 0.15% v/v Triton X-100, and 2% NHS in PBS at 4°C (see Supplementary Table A1 for details). Sections were incubated with biotin- or Alexa series fluorophore-conjugated fab fragment secondary antibodies produced in donkey (Jackson ImmunoResearch) in 2% NHS in PBS for 3 hours. FosB and pp38 MAPK underwent fluorophore-conjugated streptavidin amplification in PBS for 2 hours. The primary antibody was then further incubated in 1:100 unconjugated fab fragments (Jackson ImmunoResearch, cat no. 711-007-003, RRID:AB_2340587) to block crossreactivity with the second primary antibody raised in the same species. Second primary and secondary incubations were performed as before (one of: 1:1000 rabbit anti-rat IBA1 [Abcam ab178846, RRID:AB_2636859]; 1:2000 rabbit anti-rat GFAP [Abcam ab7260, RRID:AB_305808]; and 1:500 mouse anti-rat NeuN [Millipore MAB377, RRID:AB_2298772], 48 hours), followed by nuclear staining with DAPI dilactate in PBS for 30 mins. Sections were mounted on gelatinised slides and coverslipped with Prolong Gold anti-fade mounting medium (Invitrogen #P36934). Single-label and negative controls were performed to rule out cross-reactivity with other included primary antibodies and non-specific binding of the secondary antibodies.
2.7. Confocal Microscopy and Image Processing
Fluorescence photomicrographs were acquired across up to 46 regions of interest across the hippocampus and medial prefrontal cortex (mPFC), regions associated with affective responses, and the ventroposterior lateral (VPL) thalamus to assess a supraspinal region associated with ascending nociceptive input. Bilateral dorsal, intermediate, ventral, and ventral pole dentate gyrus, cornu Ammonis (CA)3 and CA1; rostral, mid, and caudal cingulate cortex, prelimbic cortex, and infralimbic cortex; dorsolateral and ventromedial VPL thalamus; and zona incerta were defined according to the rat brain atlas (Paxinos and Watson 2004). Images were taken using a confocal microscope (Nikon C2+) as multichannel z-stacks with a 1µm step size by an experimenter blinded to experimental group. All parameters were kept constant between subjects (see Supplementary Table A2). Single-channel control images were taken of a randomly selected slide from each staining run to rule out bleed-through between channels.
The images were processed using a custom macro in FIJI/ImageJ (Schindelin et al. 2012). Median immunofluorescent intensity data for the antibody of interest was measured on masks limited to the area defined by other channels (NeuN for neurons, IBA1 for microglia, and GFAP for astrocytes). This enabled protein expression measurements to be restricted to neurons, microglia, or astrocytes as relevant. Individual channel z-stacks were flattened using a maximum intensity projection, underwent background subtraction, and the mask channel was auto-thresholded using the ‘default’ method. For microglial pp38 MAPK, the mask was then limited to cell nuclei by performing an AND operation with a DAPI mask. Images were manually quality controlled for mask and quantification quality, and excluded from analysis where appropriate (details on final n for each comparison are available in Supplementary Tables B1-B8).
Microglial morphology was assessed by fractal analysis in line with previously published methods (Morrison et al. 2017; Fernandez-Arjona et al. 2019). Binarised masks from IBA1 + staining were segmented into single microglia using the particle analyser. All cells present in the field of view (minimum 20 cells per region of interest per rat) underwent fractal analysis in FracLac (Karperien 1999; Karperien et al. 2013) using the box counting method, with 12 grid positions and power series scaling with base 2 and exponent 2. Fractal dimension, cell area, and circularity were measured on each cell, and the final result for each region of interest was taken as the mean of all analysed cells in the field of view.
2.8. Data Analysis
Daily radial arm maze data was normalised to the total number of arm entries performed in the trial. Outliers greater than three times the interquartile range above the group mean for any measure were removed. Results were binned into three seven-day periods (days 1–7, 8–14, 15–21 post-surgery) by averaging the measure across the indicated seven days for each rat. One sham minocycline rat did not commence pellet-seeking behaviours pre-surgery and was excluded from radial maze results.
Behavioural and neuroanatomical comparisons were conducted using one-way repeated measures or two-way analysis of variance (ANOVA) where appropriate. Significant interaction or main effects were investigated with post hoc pairwise t tests with Holm multiple comparisons correction; the resulting adjusted p-values were used to assess statistical significance. The covariance between radial maze measures was evaluated with Pearson’s correlation coefficient with Holm multiple comparisons correction. Linear regressions were conducted using general linear models. All individual data points on scatter plots denote biological, rather than technical, replicates. All results were generated in R (version 4.1.2 in RStudio 2022.07.2) to a significance level of α = 0.05.