Chemicals and Reagents
Chemicals- Dulbecco’s modified eagle medium (Sigma-Aldrich, D1152), RPMI-1640 (Sigma-Aldrich, R6504), Streptomycin (Sigma-Aldrich, S6501), Penicillin (Sigma-Aldrich, P3032), Triton X-100 (Sigma-Aldrich, T8787), Sodium bicarbonate (Sigma-Aldrich, S5761), Phosphate buffer saline (Sigma-Aldrich, D5652), Lipopolysaccharide (Sigma-Aldrich, L3129), ATP (Sigma-Aldrich, A6419), EDTA (Invitrogen, 15575038), Fetal Bovine Serum (GIBCO, 10270106), Acrylamide (MP Biomedical, 193982), Glycine (MP Biomedical, 194825), Albumin Bovine Fraction V (MP Biomedical, 160069), Phenylmethylsulfonyl fluoride (MP Biomedical, 195381), Skimmed milk (Himedia, GRM1254), Hanks’ Balanced Salt Solution (Sigma-Aldrich, H6648), Strataclean resin (Agilent, 400714-61), bafilomycin A1 (Sigma-Aldrich, B1793), Rapamycin (Sigma-Aldrich, R8781), Resveratrol (Sigma-Aldrich, R5010), H2DCFDA (Sigma-Alrdrich, D6883), DAPI (Sigma-Aldrich, D9542), glycerol (Sigma-Aldrich, G5516), Tween 20 (Sigma-Aldrich, P7949), HEPES (Sigma-Aldrich, H3375), Paraformaldehyde (Sigma-Aldrich, P6148), MTT (Sigma-Aldrich, M5655), Trizma (Sigma-Aldrich, T6066), SDS (Sigma-Aldrich, L3771), Uric acid sodium salt (Sigma-Aldrich, U2875), Suberic acid (Sigma-Aldrich, S1885), OPTI-MEM media (Gibco, 11058-021), β-Amyloid (Anaspec, AS-60479).
Antibodies- BECN1 (Santa Cruz Biotechnology, SC-48341), ATG5 (Santa Cruz Biotechnology, SC-133158), ASC (Santa Cruz Biotechnology, SC-22514), CASP1 (Santa Cruz Biotechnology, SC-56036), ATG7 (Santa Cruz Biotechnology, SC-33211), BCL-2 (Santa Cruz Biotechnology, SC-7382), LAMP1 (Santa Cruz Biotechnology, SC-20011), HRP-linked anti-goat IgG (Santa Cruz Biotechnology, SC-2354), AMPK (Cell Signaling Technology, 2532S), pAMPK (Cell Signaling Technology, 2535S), NLRP3 (Cell Signaling Technology, 15101S), siRNA AMPK (Cell Signaling Technology, 6620S), MTOR (Cell Signaling Technology, 2972S), pMTOR (Cell Signaling Technology, 5536S), pCAMKK2 (Cell Signaling Technology, 12818S), pULK1 (Cell Signaling Technology, 14202S), FIP200 (Cell Signaling Technology, 12436S), GFAP (Cell Signaling Technology, 80788S), IBA1 (Cell Signaling Technology, 17198S), NeuN (Cell Signaling Technology, 12943S), HRP-linked anti-rabbit IgG (Cell Signaling Technology, 7074S), HRP-linked anti-mouse IgG (Cell Signaling Technology, 7076S), anti-mouse IgG Alexa flour 488 (Cell Signaling Technology, 4408S), anti-mouse IgG Alexa flour 555 (Cell Signaling Technology, 4409S), anti-rabbit IgG Alexa flour 488 (Cell Signaling Technology, 4412S), anti-rabbit IgG Alexa flour 555 (Cell Signaling Technology, 4413S), (anti-mIL-1β (R & D biotechnology, AF-401-NA), anti-ACTB (Sigma-Aldrich, A3854), ANTI-LC3B-II (Sigma-Aldrich, L7543), Anti-SQSTM1/p62 (Sigma-Aldrich, P0067).
Kits and other reagents- PVDF Membrane (Millipore, ISEQ00010), ECL-kit (Millipore, WBKLS0500), Precision plus protein markers (Bio-Rad, 161–0375), Bradford reagent (Bio-Rad, 500-0006), FuGENE HD (Promega, E2313), IL- 1β ELISA kit (Invitrogen, 88-7013-88), IL- 18 ELISA kit (Invitrogen, 88-50618-88), Human Aβ42 ELISA kit (Invitrogen, KHB3441)
Preparation, fractionation and Isolation of Isobavachalcone from Psoralea corylifolia extracts
The seeds of the plant Psoralea corylifolia were collected from the local market of Jammu, J&K, India. The dried seeds (2.7 kg) of the plant were coarsely powdered by grinding and extracted with a mixture of DCM (dichloromethane): MeOH (methanol) (1:1, 15 L) at room temperature for 24 h and filtered. The marc was reextracted twice with the same solvent mixture using the same volume ratio of material to solvent. The filtrates were combined and concentrated on a rotary evaporator under reduced pressure at 40°C to yield 322.5 g crude extract with an extractive value (EV) of 11.9%.
DCM: MeOH (1:1) extract was fractionated sequentially with three different solvents, viz hexane, dichloromethane and methanol by liquid-liquid partition chromatography to yield an enriched fraction of isobavachalcone. 300 g of the dried extract was dissolved in 1.5 L methanol and partitioned with 2 L hexane and this whole procedure was repeated two more times. After separating the upper hexane layer, 1.5 L DCM and 150 mL distilled water were added to the remaining methanolic layer for partitioning and the process was repeated two more times for maximum enrichment. All three fractions; hexane (108.4 g), DCM (119.7 g), and aqueous methanol (69.8 g) thus obtained were monitored by thin layer chromatography (TLC). TLC analysis concluded that the DCM fraction had the highest concentration of isobavachalcone followed by the hexane fraction.
Preferentially, the DCM fraction (100 g) was charged on a silica-gel column (60–120 mesh) and eluted with a gradient of n-hexane-ethyl acetate (95:5–50:50, v/v) which provided several subfractions. These subfractions were further analyzed by TLC using solvent system n-hexane/ethyl acetate (70:30). Based on the identification of isobavachalcone on TLC plates, the subfractions are pooled together and charged on silica gel column (60–120) to furnish the desired compound that is isobavachalcone (2.1 g).