Landsat 8 OLI/TIRS data of Tupilipalem coast demonstrations the periodic closure of lagoon mouth over a brief period affecting the ecological setting and the faunal diversity and distribution. The coastal ecosystem includes a significant metal pollutant due to anthropogenic activities. This study documents forty-nine numbers of benthic foraminiferal species and establishes its relationship with heavy metal concentrations (Fe, Mn, Cr, Cu, Ni, Pb, Zn and Cd). The factor loading matrix generated using factor analysis grades the positive and negative correlations among the heavy metals species. The results of geoaccumulation index, enrichment factor, and pollution load index, construes the seasonal differences in metal concentrations and prevalence of higher concentrations of metals in the sediments. Besides, this paper discusses the impact of coastal morphology on heavy metal concentrations coupled with ecology and distribution of benthic foraminifera.