1. Bhala VP, Verma RC. Gamma rays induced chromosomal aberrations in tomato (Solanum lycopersicum L.). Chromosome Botany. 2018; 12(4):86–90.
2. Liu K, Liu Y, Chen F. Effect of gamma irradiation on the physicochemical properties and nutrient contents of peanut. LWT. 2018; 96:535–542.
3. Mbaye G, Soumboundou M, Diouf L, Ndong B, Djiboune AR, Sy PM, Dieng SM, Diouf M, Diouf NN, Barry A. Evaluation of the effects of irradiation of peanut grain by a gamma-ray beam on culture. Open Journal of Biophysics. 2017; 7(3):94–100.
4. Pu J, Wang Q, Shen Y, Zhuang L, Li C, Tan M, Bie T, Chu C, Qi Z. Physical mapping of chromosome 4J of Thinopyrum bessarabicum using gamma radiation-induced aberrations. Theor Appl Genet. 2015; 128(7):1319–1328.
5. Zhang J, Jiang Y, Guo Y, Li G, Yang Z, Xu D, Xuan P. Identification of novel chromosomal aberrations induced by 60Co-γ-irradiation in wheat-Dasypyrum villosum lines. Int J Mol. 2015; 16(12):29787–29796.
6. Cho S, Ishii T, Matsumoto N, Tanaka H, Eltayeb AE, Tsujimoto H. Effects of the cytidine analogue zebularine on wheat mitotic chromosomes. Chromosome Science. 2011; 14:23–28.
7. Ma X, Wang Q, Wang Y, Ma J, Wu N, Ni S, Luo T, Zhuang L, Chu C, Cho S, Tsujimoto H, Qi Z. Chromosome aberrations induced by zebularine in triticale. Genome. 2016; 59(7):485–492.
8. Wan L, Li B, Lei Y, Yan L, Ren X, Chen Y, Dai X, Jiang H, Zhang J, Guo W Chen A, Liao B. Mutant Transcriptome Sequencing Provides Insights into Pod Development in Peanut (Arachis hypogaea L.). Front Plant Sci. 2017; 8:1900.
9. Xu T, Bian N, Wen M, Xiao J, Yuan C, Cao A, Zhang S, Wang X, Wang H. Characterization of a common wheat (Triticum aestivum L.) high-tillering dwarf mutant. Theor Appl Genet. 2017; 130(3):483–494.
10. Danilova TV, Zhang G, Liu W, Friebe B, Gill BS. Homoeologous recombination-based transfer and molecular cytogenetic mapping of a wheat streak mosaic virus and Triticum mosaic virus resistance gene Wsm3 from Thinopyrum intermedium to wheat. Theor Appl Genet. 2017; 130(3):549–556.
11. Kynast RG, Okagaki RJ, Galatowitsch MW, Granath SR, Jacobs MS, Stec AO, Rines HW, Phillips RL. Dissecting the maize genome by using chromosome addition and radiation hybrid lines. Proceedings of the National Academy of Sciences. 2004; 101(26):9921–9926.
12. Gao W, Chen ZJ, John ZY, Raska D, Kohel RJ, Womack JE, Stelly DM. Wide-cross whole-genome radiation hybrid mapping of cotton (Gossypium hirsutum L.). Genetics. 2004; 167(3):1317–1329.
13. Hake AA, Shirasawa K, Yadawad A, Nayak SN, Mondal S, Badigannavar AM, Nadaf HL, Gowda M, Bhat RS. Identification of transposable element markers associated with yield and quality traits from an association panel of independent mutants in peanut (Arachis hypogaea L.). Euphytica. 2017; 213(12):283.
14. Joshi P, Jadhav MP, Shirasawa K, Yadawad A, Bhat RS. Foliar disease resistant and productive mutants from the introgression lines of peanut (Arachis hypogaea). Plant Breed. 2020; 139(1):148–155.
15. Nadaf HL, Biradar K, Murthy G, Krishnaraj PU, Bhat RS, Pasha MA, Yerimani AS. Novel mutations in oleoyl-PC desaturase (ahFAD2B) identified from new high oleic mutants induced by gamma rays in peanut. Crop Sci.2017; 57(5):2538–2546.
16. Wan L, Li B, Lei Y, Yan L, Ren X, Chen Y, Dai X, Jiang H, Zhang J, Guo W, Chen A, Liao B. Mutant Transcriptome Sequencing Provides Insights into Pod Development in Peanut (Arachis hypogaea L.). Front Plant Sci. 2017; 8:1900.
17. Wang J, Jiang Y, Yin X, Yi Y, Zhao J, Shi P, Li S, Yu S. Directional breeding of high oil content peanut variety Yuhua 9 by in vitro mutagenesis and screening. Sheng Wu Gong Cheng Xue Bao (Chinese Journal of Biotechnology). 2019; 35(7):1277–1285.
18. Wan L, Li B, Pandey MK, Wu Y, Lei Y, Yan L, Dai X, Jiang H, Zhang J, Wei G, Varshney RK, Liao B. Transcriptome Analysis of a New Peanut Seed Coat Mutant for the Physiological Regulatory Mechanism Involved in Seed Coat Cracking and Pigmentation. Front Plant Sci. 2016; 7:1941.
19. Badaeva ED, Dedkova OS, Koenig J, Bernard S, Bernard M. Analysis of introgression of Aegilops ventricosa Tausch. genetic material in a common wheat background using C-banding. Theor Appl Genet. 2008; 117(5):803.
20. Huang X, Zhu M, Zhuang L, Zhang S, Wang J, Chen X, Wang D, Chen J, Bao Y, Guo J, Zhang J, Feng Y, Chu C, Du P, Qi Z, Wang H, Chen P. Structural chromosome rearrangements and polymorphisms identified in Chinese wheat cultivars by high-resolution multiplex oligonucleotide FISH. Theor Appl Genet. 2018; 131(9):1967–1986.
21. Robledo G, Seijo G. Species relationships among the wild B genome of Arachis species (section Arachis) based on FISH mapping of rDNA loci and heterochromatin detection: a new proposal for genome arrangement. Theor Appl Genet. 2010; 121(6):1033–1046.
22. Du P, Li L, Zhang Z, Liu H, Qin L, Huang B, Dong W, Tang F, Qi Z, Zhang X. Chromosome painting of telomeric repeats reveals new evidence for genome evolution in peanut. J Integr Agr. 2016; 15(11):2488–2496.
23. Zhang L, Yang X, Tian L, Chen L, Yu W. Identification of peanut (Arachis hypogaea) chromosomes using a fluorescence in situ hybridization system reveals multiple hybridization events during tetraploid peanut formation. New Phytol. 2016; 211(4):1424–1439.
24. Du P, Zhuang L, Wang Y, Yuan L, Wang Q, Wang D, Dawadondup, Tan L, Shen J, Xu H. Development of oligonucleotides and multiplex probes for quick and accurate identification of wheat and Thinopyrum bessarabicum chromosomes. Genome. 2017; 60(2):93–103.
25. Fu S, Chen L, Wang Y, Li M, Yang Z, Qiu L, Yan B, Ren Z, Tang Z. Oligonucleotide Probes for ND-FISH Analysis to Identify Rye and Wheat Chromosomes. Sci Rep. 2015; 5(1).
26. Jiang J. Fluorescence in situ hybridization in plants: recent developments and future applications. Chromosome Res. 2019; 27(3):153–165.
27. Tang S, Qiu L, Xiao Z, Fu S, Tang Z. New Oligonucleotide Probes for ND-FISH Analysis to Identify Barley Chromosomes and to Investigate Polymorphisms of Wheat Chromosomes. Genes (Basel). 2016; 7(12):118.
28. Lang T, Li G, Wang H, Yu Z, Chen Q, Yang E, Fu S, Tang Z, Yang Z. Physical location of tandem repeats in the wheat genome and application for chromosome identification. Planta. 2018: 249, 663–675.
29. Tang S, Tang Z, Qiu L, Yang Z, Li G, Lang T, Zhu W, Zhang J, Fu S. Developing New Oligo Probes to Distinguish Specific Chromosomal Segments and the A, B, D Genomes of Wheat (Triticum aestivum L.) Using ND-FISH. Front Plant Sci. 2018; 9: 1104.
30. Zhang S, Zhu M, Shang Y, Wang J, Dawadundup, Zhuang L, Zhang J, Chu C, Qi Z. Physical organization of repetitive sequences and chromosome diversity of barley revealed by fluorescence in situ hybridization (FISH). Genome. 2019; 62(5):329–339.
31. Jiang J, Gill BS. Current status and the future of fluorescence in situ hybridization (FISH) in plant genome research. Genome. 2006; 49(9):1057–1068.
32. Du P, Li L, Liu H, Fu L, Qin L, Zhang Z, Cui C, Sun Z, Han S, Xu J, Dai X, Huang B, Dong W, Tang F, Zhuang L, Han Y, Qi Z, Zhang X. High-resolution chromosome painting with repetitive and single-copy oligonucleotides in Arachis species identifies structural rearrangements and genome differentiation. BMC Plant Biology. 2018; 18(1).
33. Du P, Cui C, Liu H, Fu L, Li L, Dai X, Qin L, Wang S, Han S, Xu J, Liu B, Huang B, Tang F, Dong W, Qi Z, Zhang X. Development of an oligonucleotide dye solution facilitates high throughput and cost-efficient chromosome identification in peanut. Plant Methods. 2019; 15(1):69.
34. Zhuang W, Chen H, Yang M, Wang J, Pandey MK, Zhang C, Chang W, Zhang L, Zhang X, Tang R, Garg V, Wang X, Tang H, Chow C, Wang J, Deng Y, Wang D, Khan AW, Yang Q, Cai T, Bajaj P, Wu K, Guo B, Zhang X, Li J, Liang F, Hu J, Liao B, Liu S, Chitikineni A, Yan H, Zheng Y, Shan S, Liu Q, Xie D, Wang Z, Khan SA, Ali N, Zhao C, Li X, Luo Z, Zhang S, Zhuang R, Peng Z, Wang S, Mamadou G, Zhuang Y, Zhao Z, Yu W, Xiong F, Quan W, Yuan M, Li Y, Zou H, Xia H, Zha L, Fan J, Yu J, Xie W, Yuan J, Chen K, Zhao S, Chu W, Chen Y, Sun P, Meng F, Zhuo T, Zhao Y, Li C, He G, Zhao Y, Wang C, Kavikishor PB, Pan R, Paterson AH, Wang X, Ming R, Varshney RK. The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication. Nat Genet. 2019; 51(5):865–876.
35. Bertioli DJ, Jenkins J, Clevenger J, Dudchenko O, Gao D, Seijo G, Leal-Bertioli SCM, Ren L, Farmer AD, Pandey MK, Samoluk SS, Abernathy B, Agarwal G, Ballén-Taborda C, Cameron C, Campbell J, Chavarro C, Chitikineni A, Chu Y, Dash S, El Baidouri M, Guo B, Huang W, Kim KD, Korani W, Lanciano S, Lui CG, Mirouze M, Moretzsohn MC, Pham M, Shin JH, Shirasawa K, Sinharoy S, Sreedasyam A, Weeks NT, Zhang X, Zheng Z, Sun Z, Froenicke L, Aiden EL, Michelmore R, Varshney RK, Holbrook CC, Cannon EKS, Scheffler BE, Grimwood J, Ozias-Akins P, Cannon SB, Jackson SA, Schmutz J. The genome sequence of segmental allotetraploid peanut Arachis hypogaea. Nat Genet. 2019; 51(5):877–884.
36. Chen X, Lu Q, Liu H, Zhang J, Hong Y, Lan H, Li H, Wang J, Liu H, Li S, Pandey MK, Zhang Z, Zhou G, Yu J, Zhang G, Yuan J, Li X, Wen S, Meng F, Yu S, Wang X, Siddique KHM, Liu Z, Paterson AH, Varshney RK, Liang X. Sequencing of Cultivated Peanut, Arachis hypogaea, Yields Insights into Genome Evolution and Oil Improvement. Mol Plant. 2019; 12(7):920–934.
37. Bertioli DJ, Cannon SB, Froenicke L, Huang G, Farmer AD, Cannon EKS, Liu X, Gao D, Clevenger J, Dash S, Ren L, Moretzsohn MC, Shirasawa K, Huang W, Vidigal B, Abernathy B, Chu Y, Niederhuth CE, Umale P, Araújo ACG, Kozik A, Do Kim K, Burow MD, Varshney RK, Wang X, Zhang X, Barkley N, Guimarães PM, Isobe S, Guo B, Liao B, Stalker HT, Schmitz RJ, Scheffler BE, Leal-Bertioli SCM, Xun X, Jackson SA, Michelmore R, Ozias-Akins P. The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut. Nat Genet. 2016; 48(4):438.
38. Benson G. Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 1999; 27(2):573–580.
39. Li W, Godzik A. Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006; 22(13):1658–1659.
40. Komuro S, Endo R, Shikata K, Kato A. Genomic and chromosomal distribution patterns of various repeated DNA sequences in wheat revealed by a fluorescence in situ hybridization procedure. Genome. 2013; 56(3):131–137.
41. Orgel LE, Crick FH: Selfish DNA: the ultimate parasite. Nature. 1980; 284(5757):604–607.
42. Gemayel R, Vinces MD, Legendre M, Verstrepen KJ. Variable tandem repeats accelerate evolution of coding and regulatory sequences. Annu Rev Genet. 2010; 44:445–477.
43. Gemayel R, Cho J, Boeynaems S, Verstrepen KJ. Beyond junk-variable tandem repeats as facilitators of rapid evolution of regulatory and coding sequences. Genes-Basel. 2012; 3(3):461–480.
44. Kato A, Lamb JC, Birchler JA. Chromosome painting using repetitive DNA sequences as probes for somatic chromosome identification in maize. Proceedings of the National Academy of Sciences. 2004; 101(37):13554–13559.
45. Mukai Y, Nakahara Y, Yamamoto M. Simultaneous discrimination of the three genomes in hexaploid wheat by multicolor fluorescence in situ hybridization using total genomic and highly repeated DNA probes. Genome. 1993; 36(3):489–494.
46. Zhang P, Li W, Friebe B, Gill BS. Simultaneous painting of three genomes in hexaploid wheat by BAC-FISH. Genome. 2004; 47(5):979–987.
47. Nielen S, Campos-Fonseca F, Leal-Bertioli S, Guimarães P, Seijo G, Town C, Arrial R, Bertioli D. FIDEL—a retrovirus-like retrotransposon and its distinct evolutionary histories in the A-and B-genome components of cultivated peanut. Chromosome Res. 2010; 18(2):227–246.
48. Robledo G, Lavia GI, Seijo G. Species relations among wild Arachis species with the A genome as revealed by FISH mapping of rDNA loci and heterochromatin detection. Theor Appl Genet. 2009; 118(7):1295–1307.
49. Seijo JG, Lavia GI, Fernández A, Krapovickas A, Ducasse D, Moscone EA: Physical mapping of the 5S and 18S–25S rRNA genes by FISH as evidence that Arachis duranensis and A. ipaensis are the wild diploid progenitors of A. hypogaea (Leguminosae). Am J Bot. 2004; 91: 1294–1303.
50. Masoudi-Nejad A, Nasuda S, Bihoreau M, Waugh R, Endo TR. An alternative to radiation hybrid mapping for large-scale genome analysis in barley. Mol Genet Genomics. 2005; 274(6):589–594.
51. Tiwari VK, Heesacker A, Riera-Lizarazu O, Gunn H, Wang S, Wang Y, Gu YQ, Paux E, Koo D, Kumar A, Luo M, Lazo G, Zemetra R, Akhunov E, Friebe B, Poland J, Gill BS, Kianian S, Leonard JM. A whole-genome, radiation hybrid mapping resource of hexaploid wheat. The Plant Journal. 2016; 86(2):195–207.