Subjects. Between May 2022 and October 2023, twenty CRC patients were selected from Renmin Hospital and Taihe Hospital in Shiyan. Patients with colorectal cancer (CRC) are all recently diagnosed and untreated. Hubei University of Medicine's Clinical Ethics Committee gave its clearance for this work (2023-TH-048). Each subject provided informed consent before taking part in the research.
Preparation of CM for Human CRC Cells. In a 10 cm cell plate, 8×106 CRC cells (HCT116 and Caco−2 cells were used in this investigation) in the logarithmic growth phase were grown. The old culture media was discarded and replaced with new, serum-free culture medium once the cells had grown to 70–80% confluence. The cell supernatant was extracted after 48 hours and centrifuged for 10 minutes at 3000 rpm/min. At−80°C, the supernatant was gathered, filtered, and frozen. When in use, the cells were blended with fresh and full culture media at a ratio of 1:1 to ensure an adequate supply for the cells.
Colony formation assay. 500 CCD-18Co (A cell line exhibiting fibroblast morphology that was isolated from the normal colon tissue) cells under logarithmic growth phase were added to one well of the 6-well plate. And then control CM, HCT116-CM, Caco-2-CM, HCT116-CM + iERK (ERK inhibitor: SCH772984), Caco-2-CM + iERK were added corresponding well respectively. Each group has three repeated wells. The culture medium was changed every two days within 14 days. After removing the culture media, the cells were fixed in 4% paraformaldehyde for 15 minutes, stained with crystal violet, and the number of colonies was counted in order to see how the colonies were forming.
Real-time unlabeled dynamic cell analysis technology (RTCA). CCD-18Co cells in logarithmic growth phase with good growth density and good condition were digested by trypsin and made into a 4×104/mL cell suspension. An E-plate was filled with 50 µL of mixed CM and set on a DP detection platform to measure the baseline. Each well was then filled with 50 µL of the aforesaid cell suspension and 50 µL of CM. The cells were maintained in an incubator at 37°C and 5% CO2 to ensure optimal growth conditions. The cell index was assessed every 15 minutes. The corresponding cell proliferation curve was obtained by dynamically measuring the cell proliferation index of the experimental group and the control group.
Isolation of Peripheral blood mononuclear cells (PBMCs). PBMCs from peripheral blood samples of the participants in this study were isolated through density-gradient centrifugation using Ficoll-Paque (Sigma, 17144002). Isolated PBMCs were cultivated in the presence of RPMI 1640 medium (supplemented with 10% fetal bovine serum) at 37°C in an incubator with 5% CO2.
MACS magnetic bead sorting. Using an anti-TCR γ/δ MicroBead Kit from the Miltenyi business (Miltenyi, 130-050-701), γδT cells were separated from PBMCs in accordance with the manufacturer's instructions. The PBMCs were labeled fluorescently and magnetically with anti-Hapten MicroBeads-FITC after being first treated with anti-TCR γ/δ Hapten-Antibodies. After that, the cell suspension was put onto a MACSR Column and it was positioned inside a MACS Separator's magnetic field. The unlabeled cells were passing through the column while the magnetically labeled γδT cells were kept inside. These cells that were passing through were gathered as non-γδT cells. The positively selected γδT cells can be eluted from the magnetically held column once the column has been removed from the magnetic field. Using flow cytometry, the purity of γδT cells was shown to be greater than 95%.
Real-time PCR (RT-PCR). RT-PCR was used to assess the target gene mRNA expression levels in CCD-18Co and γδT cells. After being extracted, the total RNA of these cell types was reverse transcribed into cDNA. The expression levels of α-SMA, FAP, FN, TGF-β, granzyme, perforin, COX-2 and PGE2 were then determined. GAPDH served as the standard control. The relative mRNA expression levels of these genes were then analyzed with Bio-Rad CFX manager 3.1 software.
Western blotting. After being washed with PBS, CCD-18Co cells were lysed using RIPA buffer that contained protease inhibitors. The total protein extract was resolved by SDS-polyacrylamide gel electrophoresis. Following the transfer of proteins onto a PVDF membrane, the relevant monoclonal antibody (α-Tubulin, α-SMA, FAP, FN, TGF-β, ERK, and p-ERK) was incubated with the membrane. After the membrane was incubated with the corresponding secondary antibodies, the protein bands were detected by visualization with an ECL kit.
Co-culture of CAFs and γδT cells. The indirect cell-cell interaction/contact was done using Transwell plates (6.5 mm insert, 5.0 µm pore size polycarbonate membranes, Corning, 3421) as well as cell-cell co-culture system. Briefly, CAFs were placed in the lower chamber and grown to confluence in complete medium. γδT cells (2×105) were loaded in the upper chamber. Transwell plates were then incubated for 6 hours at 37°C in a 5% CO2 humidified atmosphere.
Flow cytometry. γδT cells were treated with 200µL of BD Cytofix/Cytoperm fixation and permeabilization solution (Becton Dickinson, 554714) for 20 minutes at 4°C prior to intracellular labeling. To determine the expression levels, γδT cells were then washed and stained with anti-granzyme (Biolegend, 372204) and anti-perforin (Becton Dickinson, 556437) antibodies. Using a Beckman MoFlo XDP flow cytometer, stained cells were examined.
Cytotoxicity assays. CytoTox 96® non-radioactive cytotoxicity assay (Promega 1780) was used for the detection of the killing of the colon cancer cells (HCT116) by γδT cells, according to the manufacturer’s protocol. The target cells (HCT116) were seeded onto 96-well plates at a density of 5 × 103 cells per well. The γδT cells isolated from the peripheral blood of the CRC patients, which were used as effector cells, were added to each well at a effector cells to target cells ratios of 1:1, 2.5:1, and 5:1 and incubated at 37°C in a 95% humidified atmosphere with 5% CO2 for 4 h. The cytotoxic activity was measured based on the LDH released from the supernatant, which was obtained and analyzed using the CytoTox 96 assay. HCT116 cell-death was calculated using the following equation: % cytotoxicity = (Experimental – Effector spontaneous – target spontaneous)/(target maximum – target spontaneous) × 100, according to the manufacturer’s protocol. Maximum and spontaneous both refer to LDH release.
TISID database analysis. The Tumor and Immune System Interaction Data Bank (TISIDB) is an online resource that combines various disparate data formats. Using the lymphocyte module, we investigated the connection between COAD's CAF-related genes and γδT cells.
Statistical analysis. Software such as GraphPad 8.0 or SPSS 19.0 were used to examine all of the data. Independent sample t tests and paired sample t tests were used to generate and statistically analyze the data. A p-value of less than 0.05 was deemed statistically significant.