Cell lines
Human cancer cell lines were cultured from various clinicopathological breast tumors, including MCF-7, SK-BR-3, T-47D, BT-474, B-T549, MDA-MB-231, MDA-MB-436, MDA-MB-468, and BO2 (all from ATCC, American Type Culture Collection ATCC, Old Town Manassas, VA, USA) [25], [26]. The MCF10A cell line, which is derived from fibrocystic breast disease, and the HME1-hTERT (Me16C) (ATCC) cell line, which is normal mammary epithelial cells immortalized with hTERT, were also used. Cells were cultured in appropriate media: α-MEM (Sigma-Aldrich) for MCF-7, BO2 and BT-474, L-15 medium (ATCC) for MDA-MB-231 and MDA-MB-468, EMEM (Lonza) for SK-BR-3, L-15 (ATCC) supplemented with 10 µg/ml insulin and 16 µg/ml glutathione (both from Sigma-Aldrich) for MDA-MB-436, RPMI-1640 (Gibco, Thermo-Fisher Scientific) supplemented with 0.1% insulin (Sigma-Aldrich) for BT-549.The human acute monocytic leukemia cell line THP-1 (ATCC) was cultured in RPMI-1640 medium (Gibco, ThermoFisher Scientific, Wilmington, DE, USA). All media were supplemented with fetal bovine serum (FBS) up to 10% (Sigma-Aldrich) and penicillin-streptomycin solution up to 1% of the final volume (Sigma-Aldrich). For MCF10A and hTERT (Me16C), the MEGM TM bullet kit (Lonza) was used for cell culture. Cell passaging was performed with TrypLE (Gibco, ThermoFisher Scientific) at a maximum confluence of 70%. The media were changed twice a week. Cell culture was performed under standard conditions in a humidified atmosphere with 5% CO2. The molecular characteristics of the individual breast cancer lines according to Kao et al. [27] are listed in Table 1.
Monocyte differentiation
THP-1 cells were cultured for 24 hours in complete RPMI-1640 medium (Gibco), supplemented with 100 nM PMA (phorbol 12-myristate 13-acetate) (Sigma-Aldrich) [28], [7]. Subsequently, adherent macrophages were identified at the bottom of the vessel.
Co-cultures
Macrophages were cultured for one week in conditioned media of MCF-7, MDA-MB-468, MCF 10A and MDA-MB-231 cells. Macrophage pellets were then harvested and frozen at -80°C for protein expression analysis.
Patients and tumors
The 74 samples of IDC used in this study were archival material from patients diagnosed and operated on at the Lower Silesian Oncology Center (Wroclaw, Poland) between 1999 and 2009. As a control, 12 non-malignant breast tissue lesions (NBTL) were included in the study. Breast cancer samples were graded according to the WHO system [29], [30] and tissue samples were either embedded in paraffin or stored at -80ºC.
Immunohistochemical reactions
Immunohistochemistry was performed on 4 µm sections of paraffin-embedded tissue samples using the Dako Autostainer Link48 (Dako, Glostrup, Denmark). Paraffin removal and antigen retrieval were performed in PT-Link (Dako) with basic EnVision FLEX Target Retrieval Solution (97°C, 20 min; Dako) for immunostaining of CHI3L2, CD68 and CD206, CHI3L1, VEGFA, VEGFD, CD31, CD34, estrogen receptor (ER), progesterone receptor (PR) and human epidermal growth factor receptor 2 (HER-2). The VEGFC and Ki-67 antibodies were treated with Dako's acidic EnVision FLEX Target Retrieval Solution. Dako's EnVision FLEX Peroxidase Blocking Reagent was used to block endogenous peroxidase for 5 minutes. The EnVision FLEX+ Mouse, High pH System (Dako) was used to visualize IHC reactions by mouse monoclonal antibodies: CHI3L2 (1:100 with linker, MAB5116, R&D, Minneapolis, Minnesota, USA), CD206 (1:100, MAB25341, R&D), CD31 (RTU, Dako; 20 minutes), CD34 (RTU, Dako; 20 minutes), VEGFA (1:50, Dako 18 hours, 4°C), Ki-67 (RTU, Dako, 20 minutes), ER (RTU, Dako, 20 minutes) and PR (RTU, Dako, 20 minutes).
The LSAB+ detection system (Dako) was used to visualize IHC reactions obtained with goat polyclonal antibodies against CHI3L1 (1:100, AF2599, 20 min; R&D Systems, Minneapolis, MN USA), VEGFC (1:100, 18 hours, 4°C; ReliaTech GmbH, Braunschweig, Germany) and VEGFD (1:100, 18 hours, 4°C; ReliaTech GmbH). HER-2 expression was measured using the HercepTest kit (Dako). Counterstaining with hematoxylin (5 minutes) was performed (EnVision FLEX Hematoxylin). The visualization systems were used according to the manufacturer's instructions. A secondary HRP-conjugated rat antibody was applied at a dilution of 1:400 (Jackson ImmunoResearch) and incubated for 1 hour at room temperature (RT). EnVision FLEX/HRP was also applied and incubated for 1 hour at RT (Dako). EnVisionFLEX Substrate Buffer was then added and incubated for 10 minutes at RT (Dako) [19], [20], [26], [31], [32].
Evaluation of the immunohistochemical reactions
The immunohistochemical reactions for CHI3L2, CHI3L1, VEGFA, VEGFC and VEGFD were evaluated using the 12-point immunoreactive score (IRS) developed by Remmele and Stegner [33] (Table 2). For the evaluation of the pan-macrophage marker CD68 and the anti-inflammatory macrophage CD206, the positively tested cells were counted in five hotspots with a x200 magnification and the average value was given. The Chalkley's ophthalmoscope (Pyser Inc., Edenbridge, UK) was used to score CD31- and CD34-positive blood vessels based on the number of grid points (n=1-25) and to estimate the relative microvessel count (MVC) [34] [35] [36]. Methodologically, the basis for the relative microvessel density (MVD) was determined by taking the mean of the three hotspots with the highest vascularization (magnification ×200), according to the approach of Fox and Harris [36]. A semi-quantitative scale from 0 to 4 was used for Ki-67 expression: 0 for 0% of positive cells, 1 for 1-10% of positive cells, 2 for 11-25% of positive cells, 3 for 26-50% of positive cells and 4 for 51-100% of positive cells [37]. For this marker, high expression was defined as values > 25% of positive cells, while low expression was considered ≤25%. For estrogen (ER), progesterone (PR) and human epidermal growth factor receptor 2 (HER-2), a semi-quantitative scale of 0-3 was used: 0 means 0% of positive cells, 1 means 1-10% of positive cells, 2 means 11-50% of positive cells and 3 means 51-100% of positive cells. For HER-2, a positive response was detected when more than 10% of cancer cells showed an intense membrane response (score of 3) [38]. CHI3L2 protein expression and its correlation with the clinicopathological data of the patients are shown in Table 3. For the markers CHI3L1, CHI3L2, VEGFA, VEGFC, VEGFD, CD31, CD34, CD68 and CD206, the median expression values were used as cut-off points for the analysis of low and high expression (Table 4). The immunohistochemical reactions were analyzed using a BX41 light microscope (Olympus, Tokyo, Japan).
Immunofluorescence reactions
Immunofluorescence reactions were performed on 4 µm thick tissue sections. Deparaffinization was performed with a graded alcohol series at room temperature, and epitope retrieval was performed at 90ºC for 15 minutes at pH=9.0. For blocking, a 1% BSA solution in PBS/0.1% Tween 20 was used for 30 minutes at RT. Slides were then incubated overnight at 4ºC with anti-CHI3L2 anti-rat antibody (1:5, #18H10) [24] and mouse monoclonal antibody (1:500, MAB5116, R&D). Incubation with secondary anti-rat and anti-mouse antibodies conjugated to the fluorochromes Alexa568 (Jackson ImmunoResearch) and Alexa 488 (ab150113, Abcam, Cambridge, UK) was performed for 1 hour at RT (dilution 1:2000 in 1% BSA in PBS/0.1% Tween20). Slides were coverslipped with FluoroShield mounting medium with DAPI (Abcam, Cambridge, UK, ab104139). A confocal microscope (Olympus Fluoview FV3000, Tokyo, Japan) and imaging software (Olympus Cell Sense) were used to analyze the immunofluorescence reactions [39], [26].
Western blot
Tissue samples were digested in T-PER Tissue Protein Extraction Reagent using a TissueRuptor homogenizer (Qiagen, Hilden, Germany), while cell lysates were homogenized in RIPA buffer. 0.For protein isolation, 5 mM PMSF (phenylmethanesulfonyl fluoride), EDTA and Heat™ Protease Inhibitor Coctail ×100 (all Thermo Scientific, Wilmington, DE, USA) were added. The bicinchoninic acid assay (Pierce BCA Protein Assay Kit) was used to determine total protein content, which was measured using the NanoDrop1000 (Thermo Fisher). Samples were denatured in a buffer consisting of 250 mM TRIS at pH 6.8, 40% glycerol, 20% (v/v) β-mercaptoethanol, 0.33 mg/ml bromophenol blue and 8% sodium dodecyl sulfate (SDS) for 10 minutes at 95°C. To perform SDS-PAGE, a Mini Protean 3 instrument (Bio-Rad, Hercules, CA, USA) was used with a 10% polyacrylamide gel for total protein and 12% for VEGFA and VEGFC; 30 μg of protein [40], [41] was applied per lane. We then performed a wet transfer in Tris-glycine buffer containing 20% methanol and 0.05% SDS onto a PVDF 0.45 µm (polyvinylidene difluoride membrane) (Immobilon, Millipore, Bedford, MA, USA) for a 1-h transfer at 140 V to nearly separate the proteins. For VEGFA and VEGFC proteins, 0.20 µm nitrocellulose membranes (Bio-Rad) were used at transfer conditions of 0.5 hours at 70 V. The blocker used was 5% skim milk in 0.05% TBST or 5% BSA in 0.05% TBST for CHI3L1.
Incubation with primary antibodies was performed overnight at 4ºC at the following concentrations: CHI3L2 (mouse monoclonal antibody, MAB5116, R&D, 1:1000 in 5% milk in 0.05% TBST), STAT-3 (rabbit polyclonal antibody, 1:1000 in 0.1%, A11185, ABclonal, Woburn, MA, USA), p-STAT-3 (rabbit monoclonal antibody, 1:1000 in 5% milk in TBST 0.05%, ab76315, Abcam). E-cadherin (mouse monoclonal, 1:1000, sc-8426, Santa Cruz), N-cadherin (mouse monoclonal, 1:1000, sc-8424, Santa Cruz), β-tubulin (rabbit polyclonal, 1:1000, ab6046, in 0.1% BSA in 0. 1% TBST, ab6046, Abcam, Cambridge, UK), VEGFA (mouse monoclonal, 1:1000, M7273, Dako, Glostrup, Denmark), VEGFC (mouse monoclonal, 101-M90, ReliaTech, Wolfenbüttel, Germany), VEGFD (mouse monoclonal, MAB286, R&D) [7].
For the secondary HRP-conjugated antibodies, incubation was performed for 1 hour at RT. Donkey anti-mouse (1:3000), donkey anti-rabbit (1:6000), both in 5% milk in 0.05% TBST (Jackson ImmunoResearch, Suffolk, UK) or donkey anti-goat (1:10000 in TBST, Jackson ImmunoResearch) were used. Super-Signal West Femto chemiluminescence substrate from ThermoFisher was used for the chemiluminescence reaction. Visualization was performed using Bio-Rad's ChemiDocTM MP system with Bio-Rad's ImageLab software (exposure time from 1 second to 3 minutes). Densitometric analysis was based on independent triplicates using ImageLab software (Bio-Rad). Reference protein was β-tubulin, except for pSTAT-3 and pERK1/2, where STAT-3 and ERK1/2 levels, respectively, served as reference [42] .
mRNA expression profile
For the transcriptomic analysis we used the database GSE3494 of the Gene Expression Omnibus Portal. This database contains clinical data and a complete microarray evaluation of gene expression for 251 breast cancer cases (G1: N=67, G2: N=128, G3: N=54) and uses the GPL96 [HG-U133A] Affymetrix Human Genome U133A Array (Thermo Fischer) (Miller et al., 2005). Patients underwent surgery in Sweden between 1987 and 1989. The raw gene expression data were normalized using the global mean approach, where the logarithmic signal values were transformed and scaled with log 500 as the target signal value. In our study, we examined CHI3L2 expression data from breast cancer tumors with different tumor grades (G1, G2, G3) and estrogen (ER) and progesterone receptor (PR) expression.