Methods were reported in accordance with ARRIVE guidelines.
Human BALF collection
11 patients undergoing elective laparoscopic abdominal surgery without pulmonary inflammation were involved for acquisition of bronchoalveolar lavage fluid (BALF) at the time points of initiation of mechanical ventilation and at least more than 3 hours’ mechanical ventilation. All individuals were recruited under an investigational protocol approved by Ethics Committee of Anhui Medical University (PJ2023-08-11; China: ChiCTR2300073376). The detailed information of human subjects is provided in Supplemented Table 1 of the supplementary file. BAL acquisition was performed according to our previous study. Total cell counting was performed using a haemocytometer.
Animal experiments
8 to 10 weeks old WT Sprague Dawley rats were purchased from Vital River Laboratory. PRDX6 knock-out (PRDX6−/−) rats (PKO) were purchased from Model animal research center of Nanjing University. Rats were acclimatized in animal laboratory, School of Basic Medical Sciences, Anhui Medical University. The animal experimental were approved by the Animal Ethics Committee of Anhui Medical University (LLSC 20190466). This study was performed in accordance with an approved Institutional Animal Care and Use Committee protocol.
VILI rat model was established according to the previous study [14]. Briefly, wild-type rats and PRDX6−/− rats received high tidal volume (tidal volume of 35ml/kg; PEEP of 0; respiratory rates of 60 breaths/min) ventilation for 3 hours after tracheotomy. Control rats received tracheotomy without mechanical ventilation. Some WT rats were intraperitoneally injected with 0.01µmol/kg MJ33(lithium salt, Sigma-Aldrich, USA)2 h before ventilation as described by others[15]. Experiments were performed with six rats which were sacrificed immediately after mechanical ventilation. The right lung BALF was collected according to our previous report [16]. The collected BALF was centrifuged to separate cellular components (4℃,700g, 5min).The separated cells were resuspended in 1ml PBS, and the total and differential cell counting was performed using a haemocytometer or Wright-Giemsa staining.
Lung histopathology
The left lung was fixed with 4% paraformaldehyde for one week, embedded in paraffin to produce 5 µm sections. Then, the paraffin sections were stained with hematoxylin and eosin (H&E). Lung injury score was calculated according to our previous report [16].
Enzyme linked immunosorbent assay (ELISA)
ELISA kits were used for detecting the human BALF and homogenized rat lung tissues, including IL-1β (Cusabio, CSB-E08053h), MCP-1 (Cusabio, CSB-E04855h), PRDX6 (Cusabio, CSB-EL018859HU), IL-1β (Cusabio, CSB-E08055r) and TNF-α (Cusabio, CSB-E11987r).
Oxidative stress examination
DHE-ROS kit (BB-470516, BestBio) was used to detect ROS level in human BALF. NO and H2O2 levels in the homogenized rat lung tissues were measured using the specific kits (A012-1 for NO, A064-1-1 for H2O2, Nanjing Jiancheng Bioengineering Institute). The microplate reader (BioTek) was used to detect and calculate OD values.
Real-time quantitative polymerase chain reaction
The total RNA was extracted from lung tissues using Trizol (AG, China). The single-stranded cDNA was synthesized from RNA samples with High-capacity cDNA reverse transcription kit (AG, China). Quantitative real-time PCR analysis was performed using ABI 7500 system with Brilliant II SYBR Green QPCR Master Mix (AG, China). The following gene-specific primers were used: rat PRDX6, 5’-TGACAGCCCGTGTGGTATTC-3’ and 3’-GTCAGCTGGAGGGAGTCAAC-5’. The data output is expressed as a fold-change of control gene expression levels for normalization.
Immunofluorescence and immunohistochemistry
Immunofluorescence was performed according to our previous report [16, 17]. Briefly, 5-µm-thick lung paraffin sections were rinsed in PBS three times for 5 minutes each. Then, the sections were incubated in 0.05M for antigen retrieval. Next, the sections were incubated with primary antibodies at 4°C overnight, including anti-PRDX6 (1:200, Abcam, USA), anti-IL-1β (1:100, Abcam, USA), anti-MPO (1:50, Santa Cruz, CA, USA), anti-CD68 (1:100, Abcam, USA), anti-iNOS (1:50, Santacruz, CA, USA), anti-MCP-1 (1:100, Abcam, USA), anti-MIP-2 (1:100, Abcam, USA), anti-CD86 (1:100, Abcam, USA) and anti-CD206 (1:100, Abcam, USA). For immunohistochemistry staining, HRP-conjugated secondary antibodies (Beijing Golden Bridge Biotechnology, Beijing, China) were used to incubate sections for 30 min. For immunofluorescence staining, FITC-conjugated secondary antibodies were added to incubate sections for staining. DAPI was used to dye the nuclei for 5 min. Confocal laser scanning microscope (Olympus, Tokyo, Japan) was used for image acquisition.
Western blot
Lung tissues were homogenized in RIPA buffer with 1mM protease inhibitor cocktail (MCE, China). Lysates were centrifuged (12000 rpm at 4°C, 15 min), followed by protein concentration using BCA assay (Sigma, USA). The equal protein sample per lane was separated on 8–14% SDS-PAGE gels and transferred to polyvinylidenedifluoride (PVDF) membranes (Millipore, 0.45 µm, IPVH00010, USA). PVDF membranes were blocked with 5% skimmed milk, incubated with primary antibody of PRDX6 (1:4000, Abcam, USA) overnight at 4°C and then probed with horseradish peroxidase-conjugated secondary antibody (1:4000) for 1 h at room temperature. Results were visualized using ECL reagent (Pierce, USA), detected with gel imager (Tanon, China), and quantified with ImageJ Software (NIH).
Statistical analysis
All data were expressed as means ± SEM and analyzed using SPSS 23.0 (IBM, USA). A preplanned, independent, two-sample t test was used for comparisons between two groups, and one-way ANOVA with post hoc test (Bonferroni test) was used for three or more groups. One-way ANOVA with Bonferroni post hoc test was performed for experiments with one single time point analysis. All tests were two-tailed, and P < 0.05 was considered as the significant change.