Tissue specimens
A total of 20 pairs of IUA tissues were obtained from the Department of Obstetrics and Gynecology, Affiliated Hospital of North Sichuan Medical College. All patients provided signed informed consent. The tissue specimens were fixed with 4% paraformaldehyde, embedded in paraffin, and sectioned for subsequent experiments. The Ethics Committee of North Sichuan Medical College approved the use of IUA tissues and study protocols.
Masson staining
The Masson staining assay was conducted according to the instructions of Masson’s Trichrome Stain Kit (G1340-7, Beijing Solarbio Science & Technology Co., Ltd.).
Cell culture and transfection
T-human embryonic stem cells (HESCs) (hTERT-immortalized cells; CRL-4003) were purchased from ATCC and cultured in Dulbecco’s modified Eagle medium/F12 medium with 3.1 g/L glucose and 1 mM of sodium pyruvate, without phenol red (Sigma Cat# D 2906), supplemented with 1.5 g/L sodium bicarbonate, 1% ITS + Premix (BD Cat# 354352), 500 ng/mL of puromycin, and 10% of charcoal/dextran treated fetal bovine serum (HyClone Cat# SH30068.03). T-HESCs were cultured at 37°C under conditions of 5% CO2.
The si-SMAD7 and siRNA-mate plus were purchased from GenePharma (GenePharma Co Ltd, Shanghai, China). Transfection was performed according to the manufacturer's instructions for siRNA-mate plus. Sequences of SMAD7 siRNAs were as follows: Si-1: 5′-AGGCAUUCCUCGGAAGUCATT-3′; Si-2: 5′-GCAGCCTAACCAGACCTTT-3′, and pCMV5-SMAD7 was constructed for the overexpression of SMAD7.
Western blotting
Cells were lysed using a radioimmunoprecipitation assay buffer containing 1% phenylmethylsulfonyl fluoride for the extraction of total protein. After the proteins were fully denatured using a boiling water bath, they were loaded onto a sodium dodecyl-sulfate polyacrylamide gel electrophoresis gel. After running electrophoresis for 2 h, the proteins were transferred to a polyvinylidene fluoride (PVDF) membrane (Millipore, Bedford, MA). Subsequently, the PVDF membrane was blocked using 5% skimmed milk at room temperature for 2 h. The membrane was rinsed with phosphate-buffered saline with Tween 20 (PBST) three times and incubated with primary antibodies overnight. PBST rinsing was performed again, and the membrane was incubated with secondary antibodies for 2 h at room temperature. After the final rinse, the proteins were visualized using an enhanced chemiluminescence solution on a ChemiDoc XRS system (Bio‐Rad). The primary antibodies included rabbit anti-SMAD7 (Santa Cruz: sc-365846), anti-LC3I/II (Sigma Aldrich L7543), anti-P62 (CST, #23214), anti-collagen I (COI) (Abcam, ab138492), anti-α-SMA (CST, #19245), anti-TFEB (CST, #37785), anti-SMAD3 (CST, #9513), anti-p-SMAD3 (CST, #9520), and anti-ATG7 (CST, #8558).
Immunohistochemistry (IHC)
IHC analyses were performed according to the SP kit instructions (ZSGBBIO ORIGENE, SP-9000). Briefly, tissue sections were heated at 56°C overnight, dewaxed to water in a concentrated gradient alcohol solution, subjected to antigen repairing with boiling citrate sodium, incubated with 3% H2O2, and blocked with nonspecific antibody bovine serum albumin. The tissue sections were incubated with primary antibodies at 4°C overnight. After rinsing with PBS thoroughly, the sections were incubated with a reaction magnifier and then incubated with secondary antibodies. Finally, the sections were visualized with DAB and photographed using a light microscope.
Chromatin immunoprecipitation (ChIP) assay
The ChIP assay was performed according to the manufacturer’s instructions for the ChIP Assay Kit (Cell Signaling Technology, 9003). Briefly, formaldehyde-fixed and cross-linked target proteins formed a complex with DNA. Chromatin was sonicated into fragments of 200–1000 bp. An anti-SMAD3 antibody was used for the immunoprecipitation of the SMAD3 protein–DNA complex. The protein A/G was used to bind the SMAD3 antibody–SMAD3 protein–DNA complex. After removing the nonspecific binding proteins and the enriched SMAD7 protein–the DNA complex was decoupled for purification and enrichment of DNA fragments. The DNA was verified by performing a quantitative polymerase chain reaction (PCR).
Double luciferase reporter gene assay
After seeding into 24-well plates, T-HESCs were transfected with 100 nM overexpressed SMAD7 plasmids or the control, which were cotransfected with 0.8 μg of TFEB-WT or mut and 1 μg of Renilla plasmid after routine cultivation of 24 h. After 24 h, the relative luciferase activity was calculated by using the dual-luciferase reporter assay system (Promega Corporation, E1910).
Tandem mRFP-GFP-LC3 fluorescence
T-HESCs were transfected with mRFP-GFP-LC3, si-SMAD7, or NC (si-SMAD7-NC, si-SMAD7-1, and si-SMAD7-2) and pcmv5-SMAD7 or NC (pcmv5-SMAD7-NC and pcmv5-SMAD7). The green fluorescent protein (GFP) and red fluorescent protein (RFP) represented autophagy bodies and lysosomes that were photographed using confocal microscopy. The GFP and RFP dots were counted using the Image Pro plus 6.0 software.
Real-time (RT)-PCR
Total RNA was extracted using the high-purity total RNA rapid extraction kit (Bioteke Corporation, RP1201). The RNA was reverse transcribed into cDNA based on the operating instructions of the iSCRIPT cDNA synthesis kit (Bio-Rad Laboratories, 4,106,228). All primers were synthesized by Sangon Biotech. RT-PCR was performed according to the instructions of GeneCopoeia. The 2 −Δ ΔCT method was used for analysis.
Animal models
1. Methods: to generate conditional knockout offspring, the gRNA of the mouse Smad7 gene, the donor vector containing loxP sites, and Cas9 mRNA were co-injected into fertilized mouse eggs. F0 founder animals were identified using PCR followed by sequence analysis, and they were bred to wild-type mice to test germline transmission and F1 animal generation. An F1-targeted mouse was bred with a tissue-specific PR-cre delete mouse to generate F2. For a heterozygous breed, Cre+ mice were bred with homozygous mice. 2. gRNA target sequence: gRNA1 (matching forward strand of the gene): CCTCCTCGCCCCGCATGTTCAGG; gRNA2 (matching forward strand of the gene): GTAAGTGCCAGTCGGATCTGTGG. 3. Genotyping strategy: Primers1: (annealing temperature of 60.0ºC) F1: 5′-CAATTCTGAAGCTTTGTAAGTGCC-3’ R1: 5′-ACATAATCCTCGCTAAACTCGCT-3′; homozygotes: one band with 207 bp; heterozygotes: two bands with 207 bp and 143 bp; wildtype allele: one band with 143 bp; Primers2: (annealing temperature of 60.0ºC); forward: 5′-GCGCTAAGGATGACTCTGGTC-3′; reverse: 5′-CCCTTCTCATGGAGATCTGTC-3′; Cre amplicon: approximately 700 bp. 4. PCR reaction: the TaKaRa MiniBEST Universal Genomic DNA Extraction kit (Ver.5.0_Code No. 9765) was used to obtain genomic DNA of high purity. Premix Taq (Vazyme, P222).
Statistical analyses
All statistical analyses were performed using the SPSS software version 22.0 (Chicago, IL). Each experiment was performed in triplicate. Statistical analyses were performed using Student’s t-test. Data are represented by mean ± standard deviation. Statistical significance was defined as p < 0.05.