Antigenic epitope mapping of GTV NP segment. Based on the improved BSP strategy, we first synthesized 30 16mer oligonucleotides with 8 overlapping amino acid residues spanning the full length of GTV-NP, which were individually fused with the GST188 tag and inserted into pXXGST-313. The SDS-PAGE results indicated that all biosynthesized 16mer-peptides were expressed correctly. The antigenicity of the NP segment was determined by western blotting using rabbit anti-GTV-NP pAbs. The results showed that four 16mer-peptides (i.e., NP11, NP21, NP24, and NP30) reacted specifically with rabbit anti-GTV-NP pAbs, thus suggesting the presence of antigenic sites or epitopes on the NP (Fig. 1).
Mapping of GTV-NP fine epitope motifs. To further refine and map the epitopes on the NP segment, the positive peptides described above were divided into 8mer-peptides with 7 overlapping amino acid residues13(Fig. 2). SDS-PAGE indicated that all synthetic peptides could be expressed correctly (Fig. 3a, 3c, 3e, 3g), and western blot showed that a total of five 8mer-peptides could bind specifically to rabbit anti-GTV-NP pAbs. Figure 3b shows that the pAbs could recognize the 8mer-peptides NP11-3 (83IMALQEKY90) and NP11-8 (88EKYGLVER95) derived from the 16mer-peptide NP11, which indicates that the minimal motifs for the NP11 epitope are IMALQEKY (named E-np-1) and EKYGLVER (named E-np-2). Similarly, the minimal epitope of NP21 is IMALQEKY (named E-np-3) (Fig. 3d); and those of NP24 are IMALQEKY (named E-np-4) and IMALQEKY (named E-np-5) (Fig. 3f).
Mapping of the NP30 minimal epitope motif with 9mer-peptides. Since the 8mer-peptides derived from NP30 could not react specifically with rabbit anti-GTV-NP pAbs, we proceeded to construct 4 sets of 9mer-peptides with 8 overlapping amino acid residues using the BSP method. SDS-PAGE showed that all 9mer-peptides were expressed correctly (Fig. 3H), and western blot showed that rabbit anti-GTV-NP pAbs could recognize the 9mer-peptide NP30-4 (236ETAAAYRNL245) derived from the 16mer-peptide NP30 (Fig. 3H). This suggests that the minimal motif of the NP30 epitope was ETAAYRNL (named E-np-6). Thus, a total of six minimal BCEs were identified in the NP segment.
Reactivity of GTV-positive sheep sera with BCEs. Western blot analysis was performed on the six selected BCEs using sheep sera infected/uninfected with GTV to determine whether other host antisera could recognize the BCEs that had been recognized explicitly by rabbit anti-GTV-NP pAbs. All six BCEs were able to react with GTV-positive sheep sera (Fig. 4a), while none reacted with GTV-negative sheep sera (Fig. 4b). These results suggest that both rabbits and sheep could recognize these six BCEs, and the six minimal BCEs (i.e., E-np-1, E-np-2, E-np-3, E-np-4, E-np-5, and E-np-6) could be used as candidate BCEs.
3D conformation and sequence conservation analysis of minimal epitope motifs. NP amino acid sequence alignment was performed between the GTV DXM strain (ALQ33263.1) used in this study and eight SFTSV strains from different countries and regions to analyze the conservation of the selected BCEs (Fig. 5). The selected SFTSV strains represented nine genetic lineages: C1 (China, BAQ59293.1), J1 (Japan, BBD19940.1), C2 (China, AFJ44285.1), C3 (China, AGI97126.1), C4 (China, AGM33040.1), C5 (China, AGM33263.1), K1 (Korea, AKI34303.1), and K2 (Korea, ASW22989.1). Sequence analysis showed that the six BCEs had a high degree of identity with the corresponding sequences of the eight strains. Also, epitope E-np-2 was fully conserved and could be used as a candidate for broad-spectrum multi-epitope vaccine design, while the alignments of E-np-1, E-np-3, E-np-4, E-np-5, and E-np-6 exhibited difference in only one amino acid in GTV DXm sequence compared with the that of corresponding sequences. For example, epitope E-np-1 (83IMALQEKY90) had mutated from "L" to "I83" in the GTV DXM strain; epitope E-np-3 (162TTKILMEA169) had mutated from "T" to "I165" in the GTV DXM strain; the epitopes E-np-4 (187GASKAEVY194) and E-np-5 (191AEVYNSFR198) had mutated from "T191" to "A191" in the GTV DXM strain; epitope E-np-6 (236ETAAAAYRNL245) had mutated from "T191" to "A191" in the GTV DXM strain, and epitope E-np-6 (236ETAAAAYRNL245) had mutated from "V" to "T" in the GTV DXM strain and from "V" to "A" in the Japanese strain (BBD19940.1). Fig. 5. Sequence comparison between GST-NP and 8 SFTSV strains. The GenBank codes and sources are shown at left and the sequence analysis was based on the ClustalW program. The six of fine BCEs and APs recognized by pAbs are highlighted, and the variable aa residue within the BCE motif are highlighted in red Dots
To further determine whether BCEs with amino acid differences in Fig. 6 could be used as universal diagnostic reagents, we synthesized five mutant peptides based on the amino acid mutations in the different epitopes: vE-np-1 (LMALQEKY), vE-np-3 (TTKTLMEA), vE-np-4 (GASKTEVY), vE-np-5 (TEVYNSFR), and vE-np-6 (EVAAAAYRNL), and their antigenicity was analyzed using western blot. These five mutant peptides were tested for antigenicity based on the mutation from I83 to L in E-np-1, from I165 to T in E-np-3, from A191 to T in both E-np-4 and E-np-5, and A237 to in E-np-6. The results showed that all mutant 8mer-peptides could react with positive sheep serum but not with negative sheep serum (Fig. 6), thus indicating that all six BCEs could be candidates for universal diagnostic reagents and broad-spectrum multi-epitope vaccine design.
The secondary structure of GTV-NP was predicted using DNAstar to show its antigenicity and hydrophilicity, while its 3D structure was simulated using PyMOL™ to locate all selected BCEs. Each BCE was labeled with a different color, among which E-np-1 overlapped E-np-2 by three amino acids, and E-np-4 overlapped E-np-5 by three amino acids, and the overlapping amino acids are displayed in yellow (Fig. 3). The results showed that all BCEs were located on the NP structure surface (Fig. 7A and 7B), which suggests that they had good surface accessibility and hydrophilicity. This is consistent with the secondary structure prediction (Fig. 7C), which shows that they are accessible for antibody chimerization and favorable for antibody-specific binding.