Arai T (1975) Culture Media for Actinomycetes. The Society for Actinomycetes Japan, Tokyo
Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, et al (2008) The RAST Server: Rapid annotations using subsystems technology. BMC Genom 8:9-75.
Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, Nikolenko SI, Pham S, Prjibelski AD, Pyshkin AV, Sirotkin AV, Vyahhi N, Tesler G, Alekseyev MA, Pevzner PA (2012) SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Com Biol 19:455-477.
Blin K, Shaw S, Steinke K, Villebro R, Ziemert N, Lee SY, Medema MH, Weber T (2019) antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline. Nucleic Acids ResOxford University Press 47:W81–W87.
Cao P, Li C, Wang H, Yu Z, Xu X, Wang X, Zhao J, Xiang W (2020) Community structures and antifungal activity of root-associated endophytic actinobacteria in healthy and diseased cucumber plants and Streptomyces sp. HAAG3-15 as a promising biocontrol agent. Microor 8:236-253.
Chun J, Oren A, Ventosa A, Christensen H, Arahal DR, Costa MS, Rooney AP, Yi H, Xu XW, Meyer SD, Trujillo ME (2018) Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes. Int J Syst Evol Microbiol 68:461–466.
Collins MD, Jones D (1980) Lipids in the classification and identification of coryneform bacteria containing peptidoglycans based on 2,4-diaminobutyric acid. J Appl Bacteriol 48:459-470.
Collins MD, Pirouz T, Goodfellow M, Minnikin DE (1977) Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100:221-230.
Felsenstein J (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17:368-376.
Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791.
Gordon RE, Barnett DA, Handerhan JE, Pang CHN (1974) Nocardia coeliaca, Nocardia autotrophica, and the nocardin strain. Int J Syst Bacteriol 24:54-63.
Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95–98.
Hasegawa T, Takizawa M, Tanida S (1983) A rapid analysis for chemical grouping of aerobic actinomycetes. J Gen Appl Microbiol 29:319-322.
Kaewkla O and Franco CMM (2021) Genome mining and description of Streptomyces albidus sp. nov., an endophytic actinobacterium with antibacterial potential. Antonie Van Leeuwenhoek. Doi: 10.1007/s10482-021-01539-1
Kämpfer P, Kroppenstedt RM (1996) Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. Can J Microbiol 42:989-1005.
Kelly KL (1964) Inter-Society Color Council – National Bureau of Standard Color Name Charts Illustrated with Centroid Colors. US Government Printing Office, Washington DC
Kimura M (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol l6:111-120.
Komagata K, Suzuki KI (1987) Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 19:161-207.
Kumar S, Stecher G, Li M, Knyaz C, and Tamura K (2018) MEGA X: Molecular Evolutionary Genetics Analysis across computing platforms. Mol Biol Evol 35:1547-1549.
Meier-Kolthoff JP, Auch AF, Klenk HP, Göker M (2013) Genome sequence-based species delimitation with confidence intervals and improved distance functions. BMC Bioinformatics 14:60-73.
Meier-Kolthoff JP, Göker M (2019) TYGS is an automated highthroughput platform for state-of-the-art genome-based taxonomy. Nat Commun 10:2182.
Minnikin DE, O’Donnell AG, Goodfellow M, Alderson G, Athalye M, Schaala A, Parletta JH (1984) An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2:233-241.
Overbeek R, Olson R, Pusch GD, Olsen GJ, Davis JJ, Disz T, et al (2014) The SEED and the rapid annotation of microbial genomes using subsystems technology (RAST). Nucleic Acids Res 42:D20-D214.
Peng C, Zhuang X, Gao C, Wang Z, Zhao J, Huang SX, Liu C, Xiang W (2021) Streptomyces typhae sp. nov., a novel endophytic actinomycete with antifungal activity isolated the root of cattail (Typha angustifolia L.). Anto van Leeu. Doi: 10.1007/s10482-021-01561-3
Pridham TG, Hesseltine CW, Benedict RG (1958) A guide for the classification of streptomycetes according to selected groups; placement of strains in morphological sections. Appl Microbiol 6:52–79.
Richter M, Rosselló-Móra R (2009) Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad Sci USA 106:19126–19131.
Richter M, Rosselló-Móra R, Glöckner FO, Peplies J (2016) JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison. Bioinformatics 32:929-931.
Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425.
Sasaki T, Igarashi Y, Ogawa M, Furumai T (2002) Identification of 6-prenylindole as an antifungal metabolite of Streptomyces sp. TP- A0595 and synthesis and bioactivity of 6-substituted indoles. J. Antibiot 55:1009-1012.
Sasser M (1990) Identification of bacteria by gas chromatography of cellular fatty acids. MIDI Technical Note 101. Microbial ID, Inc, Newark
Shirling EB, Gottlieb D (1966) Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16:313-340.
Singh R and Dubey AK (2018) Diversity and applications of endophytic actinobacteria of plants in special and other ecological niches. Front Microbiol 9:1767.
Solecka J, Zajko J, Postek M, Rajnisz A (2012) Biologically active secondary metabolites from Actinomycetes. Cent Eur J Biol 7:373-390.
Tamaoka J (1994) Determination of DNA Base Composition. In: Goodfellow M, O’Donnell AG (eds). Chemical Methods in Prokaryotic Systematics, John Wiley and Sons, Chichester, pp 463-470.
Tamaoka J, Katayama-Fujimura Y, Kuraishi H (1983) Analysis of bacterial menaquinone mixtures by high performance liquid chromatography. J Appl Bacteriol 54:31-36.
Tamura K, Nei M (1993) Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol 10:512–526.
Thawai C (2015) Micromonospora costi sp. nov., isolated from a leaf of Costus speciosus. Int J Syst Evol Microbiol 55:1456-1461.
Waksman SA (1961) The Actinomycetes, vol. 2, Classification, Identification and Description of Genera and Species. Williams and Wilkins, Baltimore
Waksman SA, Henrici AT (1943) The nomenclature and classification of the actinomycetes. J Bacteriol 46:337–341.
Wang Z, Tian J, Li X, Gan L, He L, Chu Y, Tian Y (2018) Streptomyces dioscori sp. nov., a novel endophytic actinobacterium isolated from bulbil of Dioscorea bulbifera L. Curr Microbiol 10:1384-1390.
Wayne LG, Brenner DJ, Colwell RR, Grimont PAD, Kandler O, Krichevsky MI, Moore LH, Moore WEC, Murray RGE, Stackebrandt E, Starr MP, Truper HG (1987) Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37:463-464.
Wellington EMH, Stackebrandt E, Sanders D, Wolstrup J, Jorgensen NOG (1992) Taxonomic Status of Kitasatosporia, and Proposed Unification with Streptomyces on the Basis of Phenotypic and 16S rRNA Analysis and Emendation of Streptomyces Waksman and Henrici 1943, 339AL. Int J Syst Bact 42:156-160.
Williams ST, Cross T (1971) Actinomycetes. In: Booth C (editor). Methods in Microbiology, vol 4. Academic Press, London, pp 295-334.
Xu Y, He J, Tian XP, Li J, Yang LL, Xie Q, Tang SK, Chen YG, Zhang S, Li WJ (2012) Streptomyces glycovorans sp. nov., Streptomyces xishensis sp. nov. and Streptomyces abyssalis sp. nov., isolated from marine sediments. Int J Syst Evol Microbiol 62:2371-2377.
Yoon SH, Ha SM, Kwon S, Lim J, Kim Y, Seo H, Chun J (2017) Introducing EzBioCloud: A taxonomically united database of 16S rRNA and whole genome assemblies. Int J Syst Evol Microbiol 67:1613-1617.
Zhang J, Wang JD, Liu CX, Yuan JH, Wang XJ, Xiang WS (2014) A new prenylated indole derivative from endophytic actinobacteria Streptomyces sp. neau-D50. Nat Prod Res 7:431-437.