This study demonstrated that the southern Iranian region of Jask County is a hotspot. Geographic variation in malaria transmission dynamics can impact resource allocation and the deployment of preventive strategies in high-risk areas. A considerable percentage of malaria cases come from nearby countries, notably Afghanistan and Pakistan (Fig. 1), which presents complications for national efforts to completely eliminate the disease (Moemenbellah-Fard et al. 2012; Soltani et al. 2020); Although the overall burden of malaria has significantly decreased in the south over the past ten years (Vatandoost et al. 2019). Furthermore, Iran reported no indigenous (locally transmitted) malaria cases for at least four consecutive years (2018–2021) but autochthonous cases were included in the 2022 report to WHO (WHO, 2023). It should be mentioned that Jask district in the south is the most popular place of residence, especially for Pakistanis. These people are encouraged to cities like Jask in Iran as it provides a familiar ethnic and cultural establishment similar to what they have become accustomed in their homeland. The risk of disease transmission is increased by the fact that they are involved in activities such as fuel trafficking and gardening, which put them in frequent contact with Afghan migrants and Iranian residents. Considering that Pakistan is a documented malaria hotspot (Khan et al. 2021), the fact that these people live so adjacent to Iranian communities poses serious public health issues. A significant barrier to the elimination of malaria is the unrestricted movement of migrants from Pakistan and Afghanistan into Iran. These immigrants engage in various industries, including fishing, construction work, and the trafficking of fuel. The nature of their employment opportunities, which requires them to be outdoors and exposed to mosquito bites, increases the likelihood of malaria transmission. Furthermore, the living conditions of plenty of migrants, such as confined housing and minimal access to medical care, create an environment conducive to the transmission of malaria. The mobility of these migrants throughout Iran, even outside of malaria-prone regions like Fars province (Bazrafshan et al. 2020), increases the possibility that they accidentally carry malaria parasites from one place to another. Figure 2 indicates that most malaria cases were reported in 2023. Regarding the low rates shown in 2020 and 2021, we cannot be optimistic because COVID-19 may have played a role in reducing the number of positive cases identified; for instance, in the Hormozgan province (2020–2021), two malaria patients with COVID-19 from Pakistan and Afghanistan were reported. It took an extended period to deal with these suspected cases in term of diagnosis and procedure of treatment (Fekri Jaski et al. 2023). In plenty of endemic countries, the prevention and treatment of malaria have been disrupted due to the redirection of healthcare resources towards COVID-19 response actions (Weiss et al. 2021). Manpower shortages in malaria-epidemic regions were caused by the shift of health care providers to frontline responsibilities of COVID-19, which affected efforts to adequately detect, diagnose, and treat malaria cases (Hakizimana et al. 2022). Dynamic mobility in the patients not only puts Iranian communities at risk, but also makes their follow-up and monitoring more difficult. According to our findings, 5.9% of patients, most over 23 years old, were overlooked during treatment because of their unavailability;. This result is consistent with the outcomes from other studies (Ebrahimizadeh et al. 2020). The majority of cases were reported in the warmer months of year (September, October, August) as would be expected (Alipour et al. 2013). In Hormozgan province, changes in mosquito breeding sites and vector abundance caused by seasonal temperature and rainfall changes lead to fluctuations in malaria incidence (Yeryan et al. 2016). Asymptomatic malaria accounted for 132 (45.7%) of the total individuals in the current survey (Fig. 2). Some countries, including Bangladesh, India, and Zambia, have demonstrated similar circumstances (Ganguly et al. 2013; Stresman et al. 2010; Starzengruber et al. 2014). It has been found that both symptomatic and asymptomatic individuals intensify the difficulties in diagnosing and monitoring malaria infections. A higher likelihood of seeking medical attention and undergoing diagnostic tests enables symptomatic cases to be more discovered and recorded in official malaria statistics. However, because asymptomatic cases, by definition, lack clinical signs, they may escape detection by standard surveillance systems, leading to an underreporting of the malaria burden (Cheaveau 2019). Asymptomatic malaria carriers, although devoid of clinical symptoms, serve as a hypnozoite reservoir of infection and contribute to ongoing transmission within communities. These individuals harbor low-density parasitemia and may remain infectious to mosquitoes, perpetuating malaria transmission even in the absence of apparent illness (White et al. 2014). Moreover, the detection of low-density parasitemia in asymptomatic carriers requires sensitive diagnostic tools such as molecular assays, which may not be readily available in resource-limited settings (Bousema et al. 2014). Thus, Primaquine (PQ) radical cure was conducted on a small group of Pakistani migrants living in our study area in 2021 (Fekri Jaski et al. 2024). The primaquine treatment prevented the recurrence of Plasmodium vivax gametocytes and hypnozoites (Wampfler et al. 2017). Since PQ targets dormant liver-stage parasites, it is considered a drug for the radical cure of vivax malaria; nevertheless, its therapeutic efficacy may be limited due to issues such as adherence, dose regimens, drug resistance, and adverse events. Improved tactics are required to properly target this population, as the effectiveness of PQ in treating asymptomatic carriers is questionable (Kaehler et al. 2019). A proactive approach to case detection and surveillance is imperative to diagnose and manage asymptomatic carriers of malaria, given the noteworthy percentage of asymptomatic cases in our investigation. The identification and management of asymptomatic patients harboring hypnozoites may entail Targeted monitoring and therapeutic methods, in addition to community-based activities aimed at breaking the cycle of transmission. Imported malaria can indeed contribute to maintain malaria transmission among indigenous populations and potentially increase autochthonous (locally acquired) malaria cases. New outbreaks may result from the parasite being reintroduced into the local mosquito populations through imported cases. Cooperation amongst Iran, Pakistan, and Afghanistan is necessary to develop coordinated malaria control policies that protect local communities' health while attending to the special requirements and vulnerabilities of migrant populations. In order to minimize the impact of malaria and promote health equity for all Iranian citizens, we must address the underlying social, economic, and environmental issues that contribute to the transmission of this disease among migrant groups. Since asymptomatic carriers are the latent reservoirs of infection, their treatment is essential to achieve the malaria elimination goal. Targeted screening initiatives can assist in detecting asymptomatic diseases and preventing their spread, especially in endemic and high-risk groups.