2.1 Patient and tumor sample
Tumor samples were obtained from a 63-year-old female patient who complained of persistent abdominal pain for 4 months. The patient received CRS + HIPEC and was diagnosed as epithelial malignant peritoneal mesothelioma. Resected tumors were used for the establishment of PDX models. Informed consent has been obtained from the patient, and all experiments were performed under the guideline of the Declaration of Helsinki and Institutional Animal Care and Use Committee Health guidelines (IACUC20190306).
2.2 Animals
Specific pathogen free BALB/c nu/nu mice, 4–5 weeks old, 16–18 g, were purchased from Beijing Vital River Laboratory Animal Technology Co., Ltd. (Beijing, China) and were raised individually in ventilated cages in a barrier environment at the temperature of 20–26℃, in the humidity of 40–70% at Beijing Percans Oncology (Beijing, China). After a quarantine period of 7 days, mice were prepared for model establishment. The whole study procedures were illustrated in Fig. 1.
2.3 Establishment of MPM PDX models
Tumor specimens were cut into pieces sized of 1 mm3, and then washed with RPMI 1640 medium (Corning, New York, USA) and inoculated subcutaneously on back of nude mice using a 25G trocar sheath needle. The volume of subcutaneous tumors was measured every three days. When it reached 500 mm3, the tumors were resected for characterization and passaging. The resected tumors were divided into four groups, including (1) histopathological study, (2) model establishment, (3) primary cell, and (4) subcutaneous inoculation on back of nude mice for passage. Subcutaneous models were reestablished according to the same protocol. Two nude mice were inoculated each time.
After 4 passages, subcutaneous (s.c.) tumor was cut into pieces and homogenized in a glass tissue homogenizer containing 1.5 ml RPMI 1640 medium to produce 2.5 ml tumor cell homogenate. 20 nude mice (10 males and 10 females) were used for MPM PDX model establishment. Each nude mouse was inoculated with 100 µL of tumor cell homogenate in the left lower abdominal cavity using a 25G trocar sheath needle. Mice was closely monitored daily, with the body weight measured every there days.
2.4 Gross pathological study
Mice were sacrificed for autopsy on D14 of grafting. Tumor growth and progression features were recorded. Experimental peritoneal cancer index (ePCI) was used to evaluate the extent of tumor dissemination, based on published studies by Shao [13]. The abdominal-pelvic cavity was divided into 4 subareas, and lesion size score (LS) in each subarea is determined by the diameter of the largest tumor: LS-0, no visible tumor; LS-1, diameter ≤ 0.2 cm; LS-2, 0.2 cm < diameter ≤ 0.5 cm; LS-3, diameter > 0.5 cm; Malignant ascites, 1 point. The accumulative ePCI score ranges from 0 to 13 (Fig. 2A).
2.5 Histopathological study
Tumor and organ tissues were fixed in 4% formaldehyde solution for 48 h, followed by routine dehydration, paraffin embedding and section (4 µm). Hematoxylin-eosin (HE) staining (Dako Hematoxylin,Dako Eosin and Dako Bluing Buffer, catalog number CS701) was performed on Dako CoverStainer (Agilent Technologies, Inc., California, USA). Immunohistochemistry (IHC) staining was performed on intelliPATH FLX (BIOCARE MEDICAL, LLC, California, USA) with Polymer Immunohistochemical Detection System (Wuxi OriGene Technologies, Inc., Wuxi, China, catalog number MA-2000). Primary antibodies, including anti-Calretinin, -Cytokeratin 5/6, -WT-1 and -Ki-67, were used for IHC analysis (Table 1). The images were captured using Zeiss Axio Scope.A1 and Mshot Microscopic Camera MS60. All HE and IHC sections were reviewed by 3 senior pathologists.
Table 1
Primary antibodies used for immunohistochemistry
Primary antibodies | Supplier | Catalog number | Dilution |
rabbit anti-human Calretinin antibody | Zhongshan Golden Bridge | Poly | Ready to use |
mouse anti-human WT-1 antibody | Genetic technology | 6F-H2 | Ready to use |
mouse anti-human Cytokeratin 5/6 antibody | OriGene | OTI1C7 | Ready to use |
mouse anti-human Ki-67 antibody | OriGene | UMAB107 | 1:100 |
Table 2. Gene mutations related to tumor shared between the models and the patient |
Gene | Mutation Abundance (%) | Type of mutation | Exon | Base mutation | Amino acids mutation |
BAP1 | 99.9 | FM | 13 | c.1464delC | p.P488fs |
NF2 | 90.0 | FM | 5 | c.484delT | p.F162fs |
MTBP | 60.3 | FM | 2 | c.144delC | p.H48fs |
NECTIN2 | 56.6 | SNV | 3 | c.619A > T | p.T207S |
CDC23 | 48.9 | SNV | 13 | c.1421C > G | p.A474G |
LRPPRC | 47.2 | FM | 20 | c.1978dupA | p.T660fs |
TRIM25 | 33.7 | SNV | 4 | c.998T > C | pL333P |
DHRS2 | 32.1 | SNV | 8 | c.722G > A | p.R241K |
Abbreviations: FM, frameshift mutation; SNV, single nucleotide mutation. |
2.6 Establishment of MPM primary cell lines
Isolation and purification
The s.c. tumor was cut into 1mm3 pieces, which were then transferred to a centrifuge tube containing dispersase II (Sigma, USA) and digested on 37℃ incubator for 1 h. The cell suspension was filtered through a 70 µm cell filter into a 50 ml centrifuge tube, and was then centrifuged at 515 g for 5 min, followed by re-suspending in culture medium for culturing.
After 5 days of culturing, dispersase II was added and incubated at 37 ℃ for 10 min. Most of the tumor cells were detached from the flask bottom, while the fibroblasts were still adherent to the flask. The detached tumor cells were centrifuged at 515 g for 5 min and were re-suspended in culture medium for culturing.
Cell culture
Cells were cultured in DMEM containing 10% fetal bovine serum (FBS; Gibco, USA), 100 U/mL penicillin and 100 µg/mL streptomycin (penicillin-streptomycin-glutamine; Gibco, USA) at 37 °C, 5% CO2 in a humidified Forma Steri-Cycle CO2 Incubator (Thermo Fisher Scientific, Massachusetts, USA).
2.7 Cell identification
Swiss-Gimsa staining
Sterile round slides were added onto the 24-well plate, and 200 µl culture medium was added into each well. Cells were diluted to the concentration of 1 × 106 cells/ml, and 30 µl of cell suspension was added to each well. After 24 hours of incubation, cells were fixed by using ice-cold methanol for 3 min and were stained with Swiss-Gimsa (Solarbio, China) for 5 min. The morphology of cells was observed under an EVOS™ XL Core Configured Microscope (Thermo Fisher Scientific, Waltham, MA, USA).
Immunofluorescence staining
Cells were added to 24-well plate according to above method, fixed with ice-methanol for 5 min. Primary mouse anti-Calretinin monoclonal antibody (1F5H1, Abcam, UK; 1:200) and anti-Cytokeratin 5 monoclonal antibody (XM26, Abcam, UK; 1:250) were revealed with specific goat anti-mouse Alexa Fluor® 555 (IgG H&L)-conjugated secondary antibodies (ab150114, Abcam, UK; 1:1000) for 30 min at 37 °C. Nuclei were stained with 4',6-diamidino-2-phenylindole (DAPI; Beyotime Institute of Biotechnology, China). Pictures were captured under a fluorescence microscope (Olympus, BX43, Japan).
2.8 Study on the molecular pathology by whole-exome sequencing (WES)
The WES sequencing protocol prescribed by Giannakis et al [14] was used in our study. In terms of models, the tumor tissues preserved in the nitrogen were centrifuged with 1 min, the centrifugal rate of 10,000 r/min. For the patient, the formalin-fixed, paraffin-embedded tumor tissues were sectioned into 5 µm for sequencing, and the normal tissues adjacent to tumor were regarded as control. QIAGEN DNA kit (QIAGEN NV, Hilden, German) was used to extract genomic DNA, and the Quant-iT Pico Green dsDNA Assay Kit (Invitrogen/ThermoFisher SCIENTIFIC, Massachusetts, USA) was conducted to check the DNA quality. The whole-exome capture libraries (final concentration > 20 ng/µL) were constructed by shearing, end repair, phosphorylation and ligation to barcoded sequencing adaptors. SureSelectXT Human All Exon V6 (Agilent Technologies, California, USA) was used to capture DNA and the Illumina X10 platform (Illumina Inc, California, USA) was then used to sequenced the samples.
The method of MuTect [15] was performed to detect the somatic mutations, and the somatic cell insertion and deletion markers were detected by the method of Indelocator and Strelka [16]. The mutation analysis of WES data was performed using human genome build hg19 as the reference genome.
2.9 Statistical analysis
Data are presented as mean ± standard deviation (SD) when normal distribution is satisfied. Statistical analyses and image processing were performed using GraphPad Prism 8.0.1 (GraphPad, San Diego, CA, USA) and Adobe Photoshop 2017 CC software (Adobe Systems, San Jose, CA, USA). Student's t-test were applied to evaluated statistical significance. P༜0.05 was considered statistically significant.