2.1 Microorganism
Trichoderma harzianum strain 4FR8, isolated from a fruit sample collected within the area of the Plant Genetic Conservation Project under The Royal Initiative of Her Royal Highness Princess Maha Chakri Sirindhorn, located at Chulabhorn Dam, Konsan district, Chaiyaphum province, northeastern Thailand, was employed in this study. The strain was obtained from the Biohydrogen and Microbial Enzymes Research Group at Khon Kaen University, Thailand. For inoculum preparation, T. harzianum 4FR8 was incubated on potato dextrose agar (PDA) at 30°C for 5 days.
2.2 The optimal conditions for xylanase production
T. harzianum 4FR8 under solid-state fermentation (SSF) was determined by varying the initial pH (4, 5, and 6), moisture content (60, 65, and 70%), and incubation time (3, 5, and 7 days). Six formulations (Table 1) consisting of corncob and wheat bran were performed by polypropylene bag (12 × 18 inches). A plastic tube (2 × 4.5 inches) was covered in a bag with cotton wool [24] and sterilized at 121°C for 60 min. The concentration of spore suspension was 1 × 108 spores.mL− 1 and incubated at 30°C.
Table 1
Formula of the cultivation materials for xylanase production.
Formula
|
Corncob (g)
|
Wheat bran (g)
|
C/N ratio
|
A
|
10
|
10
|
33:1
|
B
|
8
|
12
|
28:1
|
C
|
12
|
8
|
37:1
|
D
|
16
|
4
|
45:1
|
E
|
18
|
2
|
49:1
|
F
|
20
|
-
|
53:1
|
2.3 Enzyme extraction
The crude enzyme was extracted from SSF with 0.05 M citrate phosphate buffer, pH 5 (30 mL), incubated at 4°C for 24 h, then filtered through muslin cloth and centrifugated at 6,950 ×g for 10 min at 4°C.
2.4 Xylanase activity assay
The enzyme activity was investigated with 3,5-dinitrosalicylic acid [25]. The enzyme (0.5 mL) and 1% (w/v) beechwood xylan (0.5 mL) (Sigma, Germany) were incubated at 45°C for 30 min and the reaction stopped with 1 mL of 3,5-dinitrosalicylic acid (DNS) [26]. The released reducing sugars were measured at an absorbance of 540 nm, using xylose as a standard. One unit of xylanase activity (IU) was defined as the amount of enzyme-hydrolyzed xylan to 1 µmol of xylose per minute under experimental conditions [27].
2.5 Protein determination
The amount of protein was determined by Lowry method [28], using bovine serum albumin (BSA) as the standard. Protein presence and quantification of the protein were measured at 280 nm.
2.6 Purification of xylanase
The purification of the enzyme began with the salting-out procedure, performed with ammonium sulfate added to saturation of 20, 40, 60, 80, and 100%, respectively. The precipitated enzyme solution was subjected to centrifugation at 6,950 ×g for 10 min at 4 ºC and dissolved in 0.05 M citrate phosphate buffer (pH 5). Dialysis was performed in a dialysis bag against 0.05 M citrate phosphate buffer (pH 5) at 4 ºC. The dialysis was finished when the dialysate conductivity was constant. The dialyzed enzyme solution was further purified with column chromatography. The enzyme solution with dialysis was purified by DEAE-cellulose chromatography. Consequently, 0.05 M citrate phosphate buffer (pH 5) was used for equilibrating and washing the column. Additionally, 1 M sodium chloride was eluted at a flow rate of 0.5 mL.min− 1 [29].
2.7 Analysis of electrophoresis (SDS-PAGE) and zymogram
Sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) was retained to evaluate protein profiles. The gels were composed of 12.5% (w/v) acrylamide and stained with Coomassie Brilliant Blue R-250 for protein visualization. Subsequent de-staining was performed using a solution of methanol, acetic acid, and double-distilled water in a ratio of 4:1:5 (v/v/v) [19]. The standard proteins (Rainbow™ Marker, RPN800E, Sigma, USA) were used for calculating the mass of molecules from the relative mobility of the proteins. For zymogram analysis, adapted from [30], 0.1% (w/v) beechwood xylan (Sigma, Germany) was employed to visualize xylanase activity within the SDS-PAGE. Briefly, 0.1% (w/v) beechwood xylan (Sigma, Germany) was incorporated into the separating gel during preparation. Following electrophoresis, the gel was washed twice with 0.05 M citrate phosphate buffer (pH 5) to remove the unbound substrate. Subsequently, the gel was incubated in the same buffer at 45°C to allow the enzyme within the gel matrix to hydrolyze the embedded beechwood xylan substrate. The gel was stained with Congo red solution. Finally, the gel was de-stained using a 1 M sodium chloride (NaCl) solution. Xylanase activity zones appeared as clear bands against a red background due to the selective binding of Congo red to the unhydrolyzed beechwood xylan.
2.8 Effect of temperature on xylanase activity
The reaction was incubated at 30, 35, 40, 45, 50, 55, 60, 65, 70, 75, and 80 ºC on xylanase assay conditions using beechwood xylan (Sigma, Germany) as a substrate for 30 min. Thermal stability was incubated at 30–80 ºC for 1 h, then xylanase activity measured [31].
2.9 Effect of pH on xylanase activity
The optimum pH was resolved using different 0.05 M buffers such as citrate phosphate buffer pH (3–5), sodium phosphate buffer (pH 5–7), Tris-HCl (pH 7–9), and sodium glycine buffer (pH 9–11) at 30°C for 30 min [32]. The stability of pH was incubated in buffer ranges of pH 3–11 at 30°C for 1 h and measured xylanase activity [33].
2.10 Half-life of xylanase activity
The pure xylanase was incubated at 45°C with increasing intervals of time (0, 10, 20, 30, 40, 50, 60, 70, 80, 90, 100, 110, and 120 min) and xylanase activity measured.
2.11 Kinetics
The enzyme was incubated with 1% (w/v) beechwood xylan (Sigma, Germany) with concentrations varying from 1, 2, 5, 10, and 20 mg.mL− 1. The Michaelis-Menten constant (Km, mg.mL⁻¹) and the maximum velocity (Vmax, U.mg⁻¹) were determined using the Lineweaver-Burk linearization method [34]. This approach involves plotting the reciprocal of the substrate concentration (1/[S]) against the reciprocal of the reaction velocity (1/v). The Km and Vmax values can then be obtained from the slope and y-intercept [35].
2.12 Analysis of hydrolysis products
Purification of the enzyme (5 mL) and 0.05 g of corncob (0.044 mm.) was then carried out at 40°C. After 0, 12, 24, 36, and 48 h of incubation. Subsequently, the supernatant was collected to determine hydrolysate composition [36]. The purity of XOS was analyzed by thin layer chromatography (TLC). The hydrolytic product (10 µL) was spotted on the TLC silica gel plate (60 F254, Merck). The mobile phase consists of butanol, acetic acid, and deionized water (5:3:2, v/v/v). After running for two ascents, the TLC plate was detected by spraying with ethanol containing 5% (v/v) sulfuric acid (H2SO4). Subsequently, TLC plates were dried at 150°C for 5 min until brown spots appeared on the plate. The mixture containing xylose (Sigma, USA), xylobiose (Tokyo Chemical Industry, Japan), xylotetraose (Megazyme, Ireland), and xylohexaose (Megazyme, Ireland) (1 mg.mL− 1) were used as standard sugars [37]. The data from TLC were confirmed quantitatively by HPLC (Shimadzu, Tokyo, Japan) with a Fortis Amino FNH column. Xylose, xylobiose (X2), xylotriose (X3), and xylotetraose (X4) were used as standards for the quantification of sugars.
2.13 Application of XOS by corncob
The potential effects of XOS produced from corncob through an enzymatic reaction investigated two probiotic strains of lactic acid bacteria (LAB) including Lactobacillus lactis TISTR1464 and Bifidobacterium bifidum TISTR2129. These strains were cultured in their respective optimized medium: MRS medium was utilized for L. lactis TISTR1464, while MRSL medium was utilized for B. bifidum TISTR2129. Notably, XOS served as the primary carbon source for both strains throughout the experiment.
Growth and potential XOS utilization were monitored over a 72-h incubation period at 37°C under static conditions. The hydrolysates were collected for analysis at each period (0, 12, 24, 48, and 72 h). Firstly, pH measurements provided insights into metabolic activity and possible acidification associated with lactic acid production. Secondly, viable cell counts were determined using the established drop-plate technique [38] under anaerobic conditions. The viable cells were enumerated as colony-forming units (CFU) per mL− 1.
2.14 Statistical analysis
Statistic analysis was performed using IBM SPSS statistics 28.0.0.0. Multiple comparisons of the ANOVA procedure determined the significance of enzyme production with the least significant difference (LSD), while p < 0.05 was used to determine any significant differences, that were identified between treatments.