Pyroptosis model cell line"293-tetO-GD-NT " is created to assess the blocker ability of GD-CT
Pyroptosis signaling pathways converge on the activation of specific proteases, which liberate the cytolytic gasdermin N-terminal domain from the inhibitory gasdermin C-terminal domain (Extended Fig. 1A-B). Take GSDMD for example, the separation of GD-NT and GD-CT is achieved via caspase-11-mediated cleavage, allowing the pore-forming activity of GD-NT being manifested (Extended Fig. 1C, D). It is still unknown whether the free GD-CT retains the blocker ability against GD-NT. In the current study, we aimed to understand the functions and characteristics of the free GD-CT.
To investigate the blocker ability of GD-CT, we set up a pyroptosis model cell line "293-tetO-GD-NT ", where the transgene GD-NT is expressed in response to Dox (Fig. 1A). Immunoblot assay showed a fast GD-NT expression, which was detectable at 2nd hour and highest at 4th hour after Dox treatment (Fig. 1B). Cell viability assay indicated a significantly ATP production decline as early as 4th hour after Dox treatment (Fig. 1C), and LDH-based cell toxicity assay revealed an obvious cell lysis at 8th hour after Dox treatment (Fig. 1D). Dying cells were easily observed at 8th hour after Dox treatment under phase-contrast microscope or under fluorescent microscope when stained with the nucleic acid dye DAPI. More than 95% cells underwent pyroptosis at 24th hour after Dox treatment (Fig. 1E). Because Dox was reported to induce apoptosis in some cases18–20, we then used Annexin V-FITC/PI double-staining kit to test the possible involvement of Dox-induced apoptosis in the pyroptosis model cells. The result showed that Dox induced a specific pyroptosis in 293-tetO-GD-NT cells, and no apoptosis was observed during the observation period (Fig. 1F). Thus, 293-tetO-GD-NT cells were used to test GD-CT blocker ability in the following study.
GD-CT blocks GD-NT-mediated pyroptosis
To test the blocker ability of GD-CT, we transiently transfected it into 293-tetO-GD-NT cells. The expressions of GD-NT and GD-CT were confirmed via immunoblot assay (Fig. 2A). Cell toxicity assay and viability assay showed that GD-CT not only reduced the leakage of cellular LDH into culture medium, but also restored the ATP production of dying cells in a dose-dependent manner (Fig. 2B, C). With the help of phase-contrast microscope and fluorescent microscope, an obvious increase of surviving cells and a reduced number of dead cells were observed in 293-tetO-GD-NT cells transfected with GD-CT (Fig. 2D, E). We next performed Flow cytometry to quantify the dead cells, and found that Dox-induced GD-NT killed ~ 70% of 293-tetO-GD-NT cells at the observation time opint (14 hours after Dox treatment). When GD-CT were introduced into cells, the proportion of dead cells significantly dropped to ~ 50% (Fig. 2F, G). These finding suggest that GD-CT inhibited GD-NT-mediated pyroptosis in a dose-dependent manner.
GD-CT binds GD-NT and blocks its translocation to plasma membrane
In the structure of GD-FL, the liner region holds GD-NT and GD-CT together, making GD-CT completely block the pore-forming ability of GD-NT and prevent pyroptosis (Fig. 3A). To study how the free GD-CT inhibits GD-NT-mediated pyroptosis, we created Flag-tagged GD-NT and HA-tagged GD-CT and co-transfected them into HeLa cells. Immunofluorescence microscopy showed a colocalization of GD-CT and GD-NT in cytoplasm (Extended Fig. 2A, B). To further test their physical contact, HEK293 cells were con-transfected with GD-CT and GD-NT, and subjected to immunoprecipitation assay. The result showed that GD-CT, but not GD-FL, interacted with GD-NT (Fig. 3B, C). To directly assess whether GD-NT pore-formation is affected by GD-CT, we tried to test the leakage of GD-NT into culture medium. For this purpose, we transfected GD-CT into 293-tetO-GD-NT cells and separately collected culture medium, plasma membrane, cytoplasm as well as whole cell lysate for immunoblot analysis. Our result revealed that the concentrations of GD-NT in culture medium and plasma membrane were significantly reduced by GD-CT in a dose-dependent manner (Fig. 3D). Based on these results, we concluded that the free GD-CT inhibits GD-NT-mediated pyroptosis via binding GD-NT and therefore blocking its transportation from cytoplasm to plasma membrane.
The restriction of GD-CT in cytoplasm causes a spatial isolation
From Fig. 2 and Fig. 3, we realized that, although binding to GD-NT, GD-CT blocked the pore-formation not as efficient as the intramolecular mechanism of GD-FL, where GSDMD C-terminal domain completely blocks the pore-forming ability of GSDMD N-terminal domain. We supposed that the characteristics of GD-CT may contribute to its inefficiency of blocking GD-NT. To analyze GD-CT subcellular localization, we transfected GD-CT into HeLa cells and performed immunofluorescent staining. Confocal microscopy revealed that GD-CT was more restricted in cytoplasm than GD-NT (Extended Data Fig. 3). To precisely define GD-CT subcellular distribution, HEK293 cells were transfected with GD-CT, GD-NT, or GD-FL and fractionated into five compartments: soluble cytoplasmic, membrane, soluble nuclear, chromatin-bound nuclear and insoluble cytoskeletal. Immunoblot analysis showed that GD-CT localized uniquely in cytoplasm, while GD-NT was found in cytoplasm, plasma membrane as well as cytoskeleton (Fig. 4A).
To obtain more reliable data for GD-CT distribution, we engineered the construct "nmFlag-GD-FL" (Fig. 4B). In the structure of nmFlag-GD-FL, Flag-tag is added at the N-terminal of both GD-NT and GD-CT to allow their simultaneously detection. We transfected HEK293 cells with nmFlag-GD-FL and caspase-11, and then performed fractionation. Immunoblot analysis verified the unique distribution of GD-CT in cytoplasm and the wide distribution of GD-NT in cytoplasm and plasma membrane (Fig. 4C). Consistently, only GD-CT but not GD-NT was detected in culture medium (Fig. 4D). Thus, the spatial isolation may contribute to GD-CT inefficiency in the blocking of GD-NT, where GD-CT only interact with cytoplasmic GD-NT, but not membranous one, allowing the latter to perform pore-forming ability.
The short half-life of GD-CT contributes to the liberation of GD-NT
Next, to test whether GD-CT stability contributes to its inefficiency of blocking GD-NT, HEK293 cells were transfected with Flag-GD-FL, Flag-GD-NT or GD-CT, and followed by the treatment of CHX, a commonly-used protein synthesis inhibitor. We found that GD-CT had a much short half-life and became indetectable 4 hours after CHX treatment. In contrast, GD-FL did not degrade in the 4-hour observation period (Fig. 5A, B). To further determine the degradation pathways of GD-CT, we used chloroquine, calpeptin, Z-VAD-FMK and MG132 chemicals to block autophagy, calpain, caspase and Ubiquitination (Ub)-proteasome, respectively. The result indicated that MG132 completely inhibited the degradation of GD-CT. Thus, we believe that GD-CT undergoes a fast degradation via Ub-proteasome system (Fig. 5C, D).
Because GD-NT also had a short half-life (Fig. 5A-D), we employed a more reliable strategy to compare GD-CT and GD-NT for their stability. When GD-FL is cleaved by caspase-11, GD-CT and GD-NT are produced at an exact ratio of 1:1. The design of nmFlag-GD-FL allows us to detect Flag-GD-CT and Flag-GD-NT using the same antibody at the same time, making it an ideal model to simultaneously assess the turnover of GD-CT and GD-NT (Fig. 4B), (Fig. 4A). We transfected nmFlag-GD-FL and caspase-11 into HEK293 cells. Immunoblot analysis revealed that GD-CT, when compared to GD-NT, had a much lower level in cells (Fig. 5E). To assess the reliability of nmFlag-GD-FL processing, HEK293 cells were transfected with nmFlag-GD-FL and caspase-11, and treated with different protease inhibitors. Our result showed that the pan caspase Z-VAD-FMK inhibited caspase-11 activity and blocked the production of Flag-GD-CT and Flag-GD-NT (Fig. 5F). Treatment with CHX and MG132 further verified the Ub-proteasome degradation pathway of GD-CT and GD-NT (Fig. 5G, H). Therefore, we concluded that our engineered nmFlag-GD-FL is an ideal model to simultaneously assess the turnover of GD-CT and GD-NT. GD-FL is a stable protein. Once it is cleaved by caspase-11, the produced GD-CT undergoes a faster degradation than GD-NT, making less GD-CT and more GD-NT exist in cells. This mechanism contributes to the inefficiency of GD-CT blocker ability (Fig. 5I).
The design of chimera protein FKBP-GD-CTs
The blocker activity of GD-CT makes it a potential target in pyroptosis-related diseases. To purposely increase the efficiency of GD-CT blocking GD-NT, we employed two strategies to create the chimera proteins FKBP-GD-CTs (nFKBP-GD-CT and cFKBP-GD-CT). The myristoylation sequence helps GD-CT translocate to plasma membrane. Two FKBPF36V domains make GD-CT undergo chemical-induced dimerization (Fig. 6A and Extended Fig. 5A). To assess the characteristics and biological activities of FKBP-GD-CTs, we transfected them into 293-tetO-GD-NT cells, and treated cells with CHX and AP20187. We found that nFKBP-GD-CT localized in plasma membrane, but cFKBP-GD-CT unexpectedly stayed in cytoplasm (Fig. 6B). What`s more, AP20187 conferred FKBP-GD-CTs a long half-life. In contrast, AP20187 did not affect the stability of the original GD-CT (Fig. 6C). To test the blocking efficiency of FKBP-GD-CTs on the pore-forming activity of GD-NT, 293-tetO-GD-NT cells were transfected with FKBP-GD-CTs and subjected to fractionation and immunoblot analysis. The result revealed that FKBP-GD-CTs significantly suppressed the leakage of GD-NT into culture medium, and AP20187 enhanced this suppression (Fig. 6D).
FKBP-GD-CTs block GD-NT-mediated pyroptosis in a more efficient way
To test the blocking efficiency of FKBP-GD-CTs in GD-NT-mediated pyroptosis, 293-tetO-GD-NT cells were transfected with FKBP-GD-CTs or the original GD-CT, followed by treatment of AP20187. Several strategies were performed to assess cell death. Firstly, phase-contrast imaging showed that FKBP-GD-CTs protected 293-tetO-GD-NT cells from pyroptosis in a dose-dependent manner (Extended Fig. 6A), and AP20187 further enhanced this protection (Fig. 7A). Secondly, the cells were stained with DAPI without fixation and subjected to fluorescent microscopy, where the DAPI-positive cells were considered as dying cells. The result revealed that DAPI staining were much less in the cells treated with FKBP-GD-CTs and AP20187 (Fig. 7B). Lastly, we did FCAS analysis to quantify the dying cells. The smallest number of pyroptotic cells were observed in the group " cFKBP-GD-CT + AP20187" (Fig. 6C). Thus, we concluded that cFKBP-GD-CT plus AP20187 has the highest efficiency to block GD-NT-mediated pyroptosis. These data suggest that the engineered FKBP-GD-CTs can translocate to palsma membrane and become more efficient in response to AP20187, and cFKBP-GD-CT plus AP20187 has the highest efficiency to block GD-NT-mediated pyroptosis.