ILCs are important tissue-resident innate immune cells; the numbers and relative percentages of the three subtypes (ILC1, ILC2, and ILC3) vary in different organs [33, 34]. In response to acute environmental challenges and as tissue-resident cells, ILCs can renew and expand in both lymphoid and non-lymphoid organs [34]. A change in the ILC population in human tissues is associated with the pathogenesis and progression of chronic infections and inflammatory diseases [18, 28, 35]. Recently, Ikeda et al. reported that the number of NKp44+ ILC3s from colorectal cancer tissue is associated with tumour-associated tertiary lymphoid structures [22]. Our group collected 58 samples from colon cancer patients to further study the distribution characteristics of ILCs in colon cancer and their correlation with other immune cells.
Flow cytometry showed that the numbers of ILC3s and NKp44+ ILC3s in colon tumour tissues were lower than those in distal regions and negatively correlated with the pathological grade of cancer; however, there was no correlation between the number of ILC3s and patient age, sex, tumour location, tumour size, lymphatic metastases, or distant metastases. RNA-Seq showed that among the DEGs in tumour versus distal ILC3s, many were associated with tumour development or inhibition (Table S3); however, most of the DEGs were involved in tumour suppression, especially SCIN, which was upregulated in tumour ILC3s. These data concur with previous studies suggesting that ILC3s in the tumour microenvironment might have dual functions depending on the cancer phase and environmental context [20, 36–38].
Human ILC3s are the most heterogeneous ILCs. In addition to conventional NK cells, the ILC3 population can also express NCRs and can be divided according to this expression into NKp44+/− ILC3s, NKp30+/− ILC3s, and NKp46+/− ILC3s [24]. Additionally, ILC3s can be classified according to the C-C motif chemokine receptor (CCR) 6 expression into CCR6+ and CCR6− ILC3s [18]. In the present study, changes in the NKp44+/− ILC3 population in tumours and proximal and distal regions were similar to those in total ILC3s, especially the NKp44+ ILC3 population; however, changes in the number of ILC1s and ILC2s among the analysed locations were not significant. These results may be due to insufficient tissue sample size. In future investigations, we will expand the sample size and repeat this analysis.
pDCs are type-I IFN-producing cells that bridge the innate and adaptive immune systems [32] and are specialised in endosomal TLR7/9-mediated recognition of viral nucleic acids with their response involving massive secretion of type-I IFNs to promote virus removal [39]. pDCs in the tumour microenvironment mainly exist in a non-activated state and are associated with the development and maintenance of an immunosuppressive environment [27, 29–31]. Functional alterations of pDCs in the tumour microenvironment are associated with tumour immune-escape mechanisms [29, 40, 41]. In the present study, the number of pDCs in flow cytometric analysis of colon tumour tissues was higher than that in distal regions and positively correlated with tumour location, pathological grade, lymphatic metastases, and especially distant metastases of colon cancer. However, we did not find any correlation between the number of pDCs and patient age, sex, or tumour size. Our RNA-Seq results showed that, among the genes upregulated in tumour pDCs (versus distal pDCs), many were associated with tumour development, whereas many of the downregulated genes were associated with tumour inhibition (Table S4). These data suggest that pDCs might participate in tumour progression and immune escape.
Zhang et al. [28] reported that chronic HIV-1 infection induces ILC3 apoptosis via pDC activation, induction of type-I IFN expression, and CD95-mediated apoptosis. Additionally, Maazi et al. [42] showed that pDC activation alleviates airway hyperreactivity and inflammation by suppressing ILC2 function and survival. However, the relevance of ILCs and pDCs in the tumour microenvironment has not been reported. Our flow cytometric data showed a negative correlation between ILC3s and pathological grade and a positive correlation between pDCs and pathological grade. Additionally, we found a negative correlation between percentages of ILC3s and pDCs, with RNA-Seq analysis subsequently confirming this result. The analysis of ILC3 versus pDC DEGs showed that many tumour ILC3 DEGs were involved in RNA degradation, metabolic, and apoptotic pathways, whereas most tumour pDC DEGs were associated with tumour development or inhibition. Julieta et al. [43] reported mRNA degradation as an early apoptotic event in colon cancer, which is concordant with our findings.
In the in vitro experiments, after co-culturing ILC3s and pDCs with TS or IFNα, the expression of apoptosis-related genes caspase 3 and CD95 on ILC3s was significantly upregulated; the survival rate of ILC3s was significantly reduced. In addition to molecules caspase 3 and CD95, other apoptosis-related genes on ILC3s may play important roles in the way pDCs affect ILC3s; this needs further verification. For pDCs, KEGG pathway analysis showed that many of the DEGs were associated with cancer. This supports the results reported by Zhang et al. [28] that pDCs might induce ILC3s apoptosis during chronic HIV-1 infection. Additionally, in the colon cancer environment, pDCs may induce ILC3 apoptosis and promote tumour progression, which would explain the difference in percentage of ILC3s and pDCs in tumour tissues (ILC3s, low; pDCs, high). Moreover, we found multiple upregulated and downregulated genes with similar patterns between ILC3s and pDCs. Pearson correlation analysis of all samples showed obvious correlations between ILC3s and pDCs in colon cancer tissue samples. In our future work, we will confirm these results using in vivo experiments.
Su et al. [25] reported that different levels of circulating immune cells are associated with tumour location, stage, differentiation status, and lymphatic metastases in patients with colon cancer. Additionally, they found that the epidemiology, pathogenesis, genetic and epigenetic alterations, molecular pathways, and prognoses differed in patients with left-sided and right-sided colon cancers. In the present study, we found that the percentage of pDCs in the tumour tissue was correlated with the region of the colon with the tumour and that the number of pDCs progressively decreased in the sigmoid, descending, transverse, and ascending colon. However, there was no correlation between the percentage of ILC3s and the region of the colon with the tumour or between the pathological grade and the tumour region (Figures S1B and C).
Interestingly, our results showed that the number of ILC3s in the tumour was lower than that in distal and proximal regions, but the number of ILC3s in the proximal region was higher than that in the distal region. Additionally, we found a negative correlation between ILC3s from proximal regions and the pathological grade of cancer (data not shown). RNA-Seq analysis revealed thousands of DEGs between proximal and distal ILC3s (data not shown), including oncogenes. In our future work, we plan to investigate the role of ILC3s in tumour and proximal regions in colon cancer.